725086177a
gnu: r-rhpcblasctl: Update to 0.20-17.
...
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
2020-01-27 16:33:29 +01:00
d3f58abbec
gnu: r-threejs: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-threejs): Update to 0.3.3.
[native-inputs]: Use jquery 1.12.4 and threejs version r111.
[arguments]: Adjust.
2020-01-27 16:33:29 +01:00
93e63562fb
gnu: r-farver: Update to 2.0.3.
...
* gnu/packages/cran.scm (r-farver): Update to 2.0.3.
2020-01-27 16:33:29 +01:00
105639ce33
gnu: r-adegenet: Update to 2.1.2.
...
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
2020-01-27 16:33:29 +01:00
107c14ba84
gnu: r-cobs: Update to 1.3-4.
...
* gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
2020-01-27 16:33:29 +01:00
88bdfd704b
gnu: r-dorng: Update to 1.8.2.
...
* gnu/packages/cran.scm (r-dorng): Update to 1.8.2.
[propagated-inputs]: Remove r-pkgmaker.
2020-01-27 16:33:29 +01:00
9073c464e5
gnu: r-future: Update to 1.16.0.
...
* gnu/packages/cran.scm (r-future): Update to 1.16.0.
2020-01-27 16:33:28 +01:00
6c6d051322
gnu: r-rmpfr: Update to 0.8-1.
...
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1.
[inputs]: Add gmp.
[native-inputs]: Add pkg-config.
2020-01-27 16:33:28 +01:00
6378827a71
gnu: r-gmp: Update to 0.5-13.6.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
2020-01-27 16:33:28 +01:00
e99caf8a4c
gnu: r-afex: Update to 0.26-0.
...
* gnu/packages/cran.scm (r-afex): Update to 0.26-0.
2020-01-27 16:33:28 +01:00
5b959414e0
gnu: r-gh: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-gh): Update to 1.1.0.
[propagated-inputs]: Add r-cli.
2020-01-27 16:33:28 +01:00
4a7e857617
gnu: r-sjplot: Update to 2.8.2.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2.
[propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr,
r-modelr, and r-psych.
2020-01-27 16:33:28 +01:00
a4bc993f7b
gnu: r-effectsize: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1.
2020-01-27 16:33:28 +01:00
d56026a85f
gnu: r-performance: Update to 0.4.3.
...
* gnu/packages/cran.scm (r-performance): Update to 0.4.3.
2020-01-27 16:33:28 +01:00
5c61d3e5b5
gnu: r-bayestestr: Update to 0.5.1.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1.
2020-01-27 16:33:28 +01:00
3575a16b7f
gnu: r-sjstats: Update to 0.17.8.
...
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8.
[propagated-inputs]: Add r-effectsize.
2020-01-27 16:33:28 +01:00
6cdd12542a
gnu: r-survey: Update to 3.37.
...
* gnu/packages/cran.scm (r-survey): Update to 3.37.
2020-01-27 16:33:28 +01:00
a6494403b3
gnu: r-magick: Update to 2.3.
...
* gnu/packages/cran.scm (r-magick): Update to 2.3.
2020-01-27 16:33:28 +01:00
a82e617bf8
gnu: r-sjlabelled: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2.
[propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect.
2020-01-27 16:33:28 +01:00
8958b37eb8
gnu: r-factominer: Update to 2.1.
...
* gnu/packages/cran.scm (r-factominer): Update to 2.1.
2020-01-27 16:33:28 +01:00
addf7bc2b1
gnu: r-leaps: Update to 3.1.
...
* gnu/packages/cran.scm (r-leaps): Update to 3.1.
2020-01-27 16:33:27 +01:00
c23b40335d
gnu: r-vctrs: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2.
[propagated-inputs]: Remove r-backports and r-zeallot.
2020-01-27 16:33:27 +01:00
8a8e296406
gnu: r-tsp: Update to 1.1-8.
...
* gnu/packages/cran.scm (r-tsp): Update to 1.1-8.
2020-01-27 16:33:27 +01:00
485b9cea5a
gnu: r-xts: Update to 0.12-0.
...
* gnu/packages/cran.scm (r-xts): Update to 0.12-0.
2020-01-27 16:33:27 +01:00
e5b38da1cc
gnu: r-broom: Update to 0.5.4.
...
* gnu/packages/cran.scm (r-broom): Update to 0.5.4.
2020-01-27 16:33:27 +01:00
fde9fc4871
gnu: r-lpsolve: Update to 5.6.15.
...
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15.
2020-01-27 16:33:27 +01:00
0be161720c
gnu: r-prettyunits: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1.
2020-01-27 16:33:27 +01:00
6e27edda2c
gnu: r-rgooglemaps: Update to 1.4.5.2.
...
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2.
2020-01-27 16:33:27 +01:00
f0eecc6be9
gnu: r-callr: Update to 3.4.1.
...
* gnu/packages/cran.scm (r-callr): Update to 3.4.1.
2020-01-27 16:33:27 +01:00
c6b4b4e719
gnu: r-diversitree: Update to 0.9-13.
...
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13.
2020-01-27 16:33:27 +01:00
fd6412cd2c
gnu: r-metap: Update to 1.3.
...
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
2020-01-27 16:33:27 +01:00
5e61de2421
gnu: python-testpath: Remove incorrect #:imported-modules.
...
Fixes <https://bugs.gnu.org/39298 >.
Reported by Clément Lassieur <clement@lassieur.org>
and Ricardo Wurmus <rekado@elephly.net>.
This pacakge would import (srfi srfi-1) from the host Guile, leading to
build failures when the host Guile is 3.0.
* gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect
#:imported-modules.
2020-01-27 14:18:12 +01:00
1f7f16dced
gnu: emacs-org-make-toc: Update to 0.4.
...
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4
2020-01-27 04:42:14 -08:00
4a0e49279d
gnu: public-inbox: Enable support for background HTTP/NNTP daemons.
...
* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server.
2020-01-27 17:38:49 +08:00
71ffa528ef
gnu: keepassxc: Update to 2.5.3.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3.
2020-01-27 10:37:35 +02:00
47ea2ad196
gnu: s6: Install documentation.
...
* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase.
2020-01-27 11:41:45 +08:00
87858bc526
gnu: ocaml: Switch to ocaml 4.09 by default.
...
Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires
the janestreet packages, which cannot be upgraded as no version supports
4.09 and 4.07 at the same time. Moreover, newer versions of the
janestreet packages have a different dependency graph, which will
require a whole new set of packages. We cannot simply use
package-with-ocaml4.07 on them.
* gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen)
(ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri)
(ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed)
(ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley)
(ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp)
(ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare)
(ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv)
(ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf)
(ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench)
(ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value)
(ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional)
(ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert)
(ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv)
(ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane)
(ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core)
(ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ...
(ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex)
(ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri)
(ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width)
(ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop)
(ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin)
(ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp)
(ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib)
(ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib)
(ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv)
(ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf)
(ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate)
(ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep)
(ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message)
(ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp)
(ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert)
(ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style)
(ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot)
(ocaml4.07-ppx-jane, ocaml4.07-splittable-random)
(ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core)
(ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3)
(ocaml4.07-lacaml): ... to this and use ocaml 4.07.
(bap, unison): Use ocaml-4.07.
* gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07.
2020-01-27 03:56:06 +01:00
1e8da4cdef
guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml.
...
* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune
argument and add it to transformed packages when relevant.
2020-01-27 03:55:52 +01:00
0ccd9463ec
gnu: Add ocaml4.07-dune.
...
* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable.
2020-01-27 03:55:42 +01:00
73c26d5729
gnu: Add ocaml4.07-lablgtk.
...
* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable.
(lablgtk)[properties]: Add variant.
2020-01-27 03:55:27 +01:00
7a4780ce9d
gnu: ocambuild: Update to 0.14.0.
...
* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0.
[build-system]: Use ocaml-build-system.
2020-01-27 03:54:52 +01:00
1ef71f5225
gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable.
...
Without setting this path variable, gtk+ must be installed in the user's
profile for pcsxr's GUI to work.
* gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and
return #t from 'cd-subdir' and 'fix-cdio-lookup' phases.
2020-01-26 19:12:22 -05:00
4144eb195c
gnu: sicp: Remove unused module import.
...
* gnu/packages/scheme.scm (sicp)[arguments]: Do not import (srfi srfi-1).
2020-01-27 00:47:57 +01:00
2e4ea249a1
gnu: emacs-org-contrib: Update to 20200126.
...
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20200126.
2020-01-27 00:02:34 +01:00
406c7bc6cd
gnu: emacs-org: Update to 9.3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.2.
2020-01-26 23:58:23 +01:00
753c9b7c19
gnu: emacs-modus-themes: Update to 0.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.4.0.
2020-01-26 23:56:25 +01:00
435c2c39aa
Revert "gnu: Add python-pathtools."
...
This package was already in Guix since commit
dbcef44a0b87435943d1
2020-01-26 23:39:35 +01:00
fed17bcad9
Revert "gnu: Add python-iocapture."
...
This package was already in Guix since commit
dbcef44a0b2cb4ee2787
2020-01-26 23:39:35 +01:00
3293b1bce9
Revert "gnu: Add python-argh."
...
This package was already in Guix since commit
db6bd842aafb4db07467
2020-01-26 23:39:35 +01:00
7ff169d04f
guix-install.sh: Correctly treat empty or unset $XDG_DATA_DIRS
...
If $XDG_DATA_DIRS is unset, default value of "/usr/local/share:/usr/share"
is used according to XDG Base Directory Specification. However,
/etc/profile.d/guix.sh treats this value as empty list when appending its
own directory, so after installing Guix on the system, launchers such
as Rofi stop searching for .desktop files in /usr/share/applications/
and can't launch applications other than those installed with Guix.
This patch fixes the bug in generated /etc/profile.d/guix.sh
* etc/guix-install.sh (sys_create_init_profile): Use default value of
/usr/local/share:/usr/share/ before appending if $XDG_DATA_DIRS is not
set.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-01-26 23:21:39 +01:00
Ricardo Wurmus
Ludovic Courtès
David Wilson
宋文武
Efraim Flashner
Julien Lepiller
Kei Kebreau
Marius Bakke
Nicolas Goaziou
Alexander Krotov