4add20468d
gnu: r-adductdata: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.20.0.
Change-Id: I9f795cf931e90fa5f8331a5d3ffa855b56355ca6
2024-05-08 12:53:15 +02:00
378904acf5
gnu: r-pfam-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.19.1.
Change-Id: If95fa52bdfeb87ed606b9b7564ce73606a8616c8
2024-05-08 12:53:15 +02:00
7eabe6d69d
gnu: r-escape: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-escape): Update to 2.0.0.
[propagated-inputs]: Remove r-broom, r-data-table, r-matrix, and r-rlang; add r-aucell,
r-ggdist, r-ggpointdensity, and r-seuratobject.
Change-Id: I7fa2ea581a85a579feeac50e1e4b32ac4fa83d7b
2024-05-08 12:53:15 +02:00
a5729ea6ae
gnu: r-org-mm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1.
Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08 12:53:15 +02:00
afb439ddf1
gnu: r-org-hs-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1.
Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08 12:53:15 +02:00
b0cd3610d3
gnu: r-org-dr-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1.
Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08 12:53:15 +02:00
1e295ff0d3
gnu: r-org-dm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1.
Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08 12:53:15 +02:00
30be3f2fc8
gnu: r-org-ce-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1.
Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08 12:53:15 +02:00
d85a5a2047
gnu: r-go-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1.
Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08 12:53:15 +02:00
5cac1ec6c5
gnu: r-genomeinfodbdata: Update to 1.2.12.
...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.12.
Change-Id: I185d52161ec45de7d03fedeb51f2a28864df9903
2024-05-08 12:53:15 +02:00
44c5036af2
gnu: r-reactome-db: Update to 1.88.0.
...
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.88.0.
Change-Id: I80b58a45e8265e82e7a84d8d428fc4339fd926a7
2024-05-08 12:53:15 +02:00
43b32ab2e6
gnu: r-org-sc-sgd-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.19.1.
Change-Id: Iee6d57797bb3dde152ce0e22a3ed25c30c039a09
2024-05-08 12:53:15 +02:00
487cf830ae
gnu: r-org-bt-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.19.1.
Change-Id: If37dc4be3287f0729b2e2d4aecef6745700b429c
2024-05-08 12:53:15 +02:00
37696fafac
gnu: r-org-eck12-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.19.1.
Change-Id: I0f3a84abd0dff114231c341e776b542a7b047176
2024-05-08 12:53:15 +02:00
a1852df9ff
gnu: r-mafh5-gnomad-v3-1-2-grch38: Update to 3.15.1.
...
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): Update to 3.15.1.
Change-Id: I6b83a3701c2a4282864bf648677b258c1315598c
2024-05-08 12:53:15 +02:00
8d531f9afb
gnu: Add r-ucsc-utils.
...
* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable.
Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
2024-05-08 12:53:15 +02:00
61a5676a9d
gnu: r-biocpkgtools: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.22.0.
Change-Id: I4afb2530597279d9f2b6c01fc7d76c95c88aa629
2024-05-08 12:53:14 +02:00
b9040cb312
gnu: r-debcam: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.22.0.
Change-Id: Iec96dd28f8adc4d8c070f2e50098a02a4582ec33
2024-05-08 12:53:14 +02:00
45b4f78687
gnu: Add r-txdbmaker.
...
* gnu/packages/bioconductor.scm (r-txdbmaker): New variable.
Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
2024-05-08 12:53:14 +02:00
cf3471cc9e
gnu: Add r-pwalign.
...
* gnu/packages/bioconductor.scm (r-pwalign): New variable.
Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
2024-05-08 12:53:14 +02:00
155ac301f7
gnu: Add r-psmatch.
...
* gnu/packages/bioconductor.scm (r-psmatch): New variable.
Change-Id: I7b3071424563b713912016301f551ce00aceddea
2024-05-08 12:53:14 +02:00
6e126301b4
gnu: Add r-gypsum.
...
* gnu/packages/bioconductor.scm (r-gypsum): New variable.
Change-Id: Id3bdf044d9a885605b1b2b2ceba32398da6ddec0
2024-05-08 12:53:14 +02:00
2c6bd40baf
gnu: Add r-alabaster-se.
...
* gnu/packages/bioconductor.scm (r-alabaster-se): New variable.
Change-Id: I698a2d678e4819d9ac4b2668a2f7ef2063f8d674
2024-05-08 12:53:14 +02:00
1dd2cce88f
gnu: Add r-alabaster-sce.
...
* gnu/packages/bioconductor.scm (r-alabaster-sce): New variable.
Change-Id: I8121614d5b93922555b6cb5fd7a05d68980aff20
2024-05-08 12:53:14 +02:00
092609b36a
gnu: Add r-alabaster-ranges.
...
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable.
Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
2024-05-08 12:53:14 +02:00
ba8fbb89e4
gnu: Add r-alabaster-matrix.
...
* gnu/packages/bioconductor.scm (r-alabaster-matrix): New variable.
Change-Id: If5b438983a70f8f81e3442d8a1cb3821f4e3489a
2024-05-08 12:53:14 +02:00
8031162607
gnu: Add r-alabaster-base.
...
* gnu/packages/bioconductor.scm (r-alabaster-base): New variable.
Change-Id: Ifb9fe95fb237d12dadf134278f130e614925b5ec
2024-05-08 12:53:14 +02:00
9bd400722d
gnu: Add r-alabaster-schemas.
...
* gnu/packages/bioconductor.scm (r-alabaster-schemas): New variable.
Change-Id: I3d9218af9b4408e3375f9ccd98a4c95935b2c273
2024-05-08 12:53:14 +02:00
1117e96d9f
gnu: r-cytoml: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.16.0.
Change-Id: I14ae3ae0d5ff8d66b964651b6fe3753d934f1554
2024-05-08 12:53:14 +02:00
c29bc85ec6
gnu: Add r-jsonvalidate.
...
* gnu/packages/cran.scm (r-jsonvalidate): New variable.
Change-Id: I1393fb3b4034f870663dc887be783e8aaf4c9884
2024-05-08 12:53:14 +02:00
66e179ac18
gnu: r-xts: Remove vignette outputs.
...
* gnu/packages/cran.scm (r-xts)[source]: Add snippet to remove generated
files.
Change-Id: Iba82b900e632e2cf5a99c9deb807bae6cf3dabcd
2024-05-08 12:53:14 +02:00
628d007b83
gnu: r-desctools: Set HOME variable.
...
* gnu/packages/statistics.scm (r-desctools)[argumonts]: Add phase 'pre-check.
Change-Id: Icec222a5cdcb2c95ad7bd600ce5188bd5588bb4e
2024-05-08 12:53:14 +02:00
79c2b32337
gnu: r-with-tests: Update to 4.4.0.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.0.
Change-Id: If77c95867cc16141c397e48c899a9ade3e89876d
2024-05-08 12:53:14 +02:00
2bea3f2562
gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util.
...
* gnu/packages/ipfs.scm (kubo) [source]: Delete "go-cidutil", "go-log",
"go-ipfs-util" from bundled packages.
[inputs]: Add go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-log,
go-github-com-ipfs-go-log-v2, and go-github-com-ipfs-go-ipfs-util.
Change-Id: I3e49deb9572c6ac471210a392a52117fd0b9ce1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:07:21 +01:00
231ffaf1ac
gnu: Add go-github-com-ipfs-go-cidutil.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-cidutil): New variable.
Change-Id: I6077fc00d22b541a959a6623c8666c35288ca105
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
6f60f90c15
gnu: Add go-github-com-ipfs-go-log.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log): New variable.
Change-Id: I5b5b1d594b5458a7ca156346c6a6dc3c8d5bd69d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
58cc52f2dc
gnu: Add go-github-com-ipfs-go-log-v2.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log-v2): New variable.
Change-Id: Id6d85bfa883670345420c21937681ae2844f6263
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:03:02 +01:00
8cb146a3e6
gnu: Add go-github-com-ipfs-go-detect-race.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-detect-race): New variable.
Change-Id: Ic65c12a717a50c4309bc89d29d158a43fbc0c81a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:25 +01:00
f669a24a95
gnu: Add go-github-com-ipfs-go-ipfs-util.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-util): New variable.
Change-Id: Ic496282dc62b7c0d5bd9017aff6a3818b2661309
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:16 +01:00
2795d0f3e7
gnu: kubo: Unbundle go-bazil-org-fuse.
...
* gnu/packages/ipfs.scm (kubo) [source]: Remove vendor/bazil.org.
[inputs]: Add go-bazil-org-fuse.
Change-Id: Ie55e609c15a6eaca7ec32521a55620bf674af240
2024-05-07 23:18:48 +01:00
1f6c4f226d
gnu: Add go-bazil-org-fuse.
...
* gnu/packages/golang-xyz.scm (go-bazil-org-fuse): New variable.
Change-Id: I933d90dca50110f53831febc81d587c14973934f
2024-05-07 23:18:48 +01:00
330a133b85
gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz.
...
* gnu/packages/golang.scm: (go-git-sr-ht-emersion-go-scfg): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here
Change-Id: I75cc680543313e41abc86e71d48a9be9e9ce694a
2024-05-07 23:18:48 +01:00
74b2a9d5a4
gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web.
...
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.
Change-Id: I2b07dc198f6710680da0430e5f302893060e37b8
2024-05-07 23:18:47 +01:00
072b06f2f3
gnu: go-git-sr-ht-sircmpwn-getopt: Move to golang-xyz.
...
* gnu/packages/golang.scm (go-git-sr-ht-sircmpwn-getopt): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here.
Change-Id: Ic53ec6828f7389326191b659dd16b623e6d1af43
2024-05-07 23:18:47 +01:00
9716914d4e
gnu: web: Remove syncthing module from used modules.
...
There is no more mudule from syncthing which needs to be imported
anymore.
* gnu/packages/web.scm: Remove (gnu packages syncthing) module.
Change-Id: I688e72009e2daa5e75eaeaaeff9026ca888b266b
2024-05-07 23:17:46 +01:00
fb44cd89df
gnu: go-github-com-nbrownus-go-metrics-prometheus: Disable tests.
...
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus):
Disable all tests.
Change-Id: I7f340fd1e58edc0203068c762a1bbc798003a84b
2024-05-07 21:33:45 +01:00
aa1090713a
gnu: tmsu: Enable test suite.
...
* gnu/packages/file-systems.scm (tmsu): Fail over to the project's
Makefile targets.
[arguments]: <#:go>: Use go-1.21.
<#:phases>: Add 'adjust-makefile' phase. Use custom 'build, 'check and
'install phases.
Change-Id: Ice920f2196123f1a1f1561879ab919bc0d4e8512
2024-05-07 21:33:44 +01:00
c7bd735bc4
gnu: sqls: Use go-1.21.
...
Merge all inputs into native-inputs since the output result of the
package is an executable that does not require sources from Golang
modules to be available after installation.
* gnu/packages/databases.scm (sqls):
[arguments]: <#:go>: Use go-1.21.
[inputs]: Remove go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
[native-inputs]: Add go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
Change-Id: I9312a483dfa954b5f0ad4cfac04b5153570bf571
2024-05-07 21:33:44 +01:00
e582f27a53
gnu: Add go-github-com-msteinert-pam-v2.
...
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam-v2): New variable.
Change-Id: I7dfcb72703722f894eb52c603f02e64e7350f53a
2024-05-07 21:33:44 +01:00
243ff41195
gnu: Add soju.
...
* gnu/packages/irc.scm (soju): New variable..
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I18b7e574339e98fdf2623338aac1635c8e727699
2024-05-07 21:33:44 +01:00
13912821a2
gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to 2.0.0.
...
* gnu/packages/syncthing.scm (go-github-com-matttproud-golang-protobuf-extensions-pbutil):
Update to 2.0.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ia9f1acacd337b95526ee0b9b7b31f1de598f30d3
2024-05-07 21:33:44 +01:00
b2054615da
gnu: go-github-com-prometheus-client-golang: Update to 1.17.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-golang):
Update to 1.17.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I4d3e9d3e61991f94fc2a7bd4b85e7d4010c4b508
2024-05-07 21:32:36 +01:00
2359feb658
gnu: go-github-com-prometheus-common: Update to 0.45.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-common): Update to
0.45.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic03cdaf87253df869e1d791336189032fac0d625
2024-05-07 15:38:28 +01:00
b7800aa34f
gnu: go-github-com-prometheus-client-model: Update to 0.5.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-model):
Update to 0.5.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iebb57390b99a4ed2567588872a9745a69aae9ced
2024-05-07 15:38:28 +01:00
881f9630c9
gnu: Add go-gopkg-in-irc-v4.
...
* gnu/packages/irc.scm (go-gopkg-in-irc-v4): New variable.
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ie1afdde3d1a23154e592445b5ce91e5918c6c822
2024-05-07 15:38:28 +01:00
b6a8c4c142
gnu: go-gopkg-in-irc-v3: Enable tests.
...
* gnu/packages/irc.scm (go-gopkg-in-irc-v3): Enable tests, remove input
lables.
[propagated-inputs]: Remove go-github-com-stretchr-testify.
[native-inputs]: Add go-github-com-stretchr-testify and
python-irc-parser-tests.
Change-Id: I83c8094e9417052781993c3cde900c47875a2029
2024-05-07 15:38:28 +01:00
bb49060039
gnu: Add python-irc-parser-tests.
...
* gnu/packages/irc.scm (python-irc-parser-tests): New variable.
Change-Id: Iaffea626ed06e228562b3c92123d30c9712de7c3
2024-05-07 15:38:28 +01:00
4f4034bb46
gnu: Add go-git-sr-ht-emersion-go-sqlite3-fts5.
...
* gnu/packages/golang-xyz.scm (go-git-sr-ht-emersion-go-sqlite3-fts5):
New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Icb6f77b306ff5c8a816d8a42e90a1bf23115b38f
2024-05-07 15:38:28 +01:00
bb1beff54d
gnu: Add go-git-sr-ht-sircmpwn-go-bare.
...
* gnu/packages/golang-xyz.scm (go-git-sr-ht-sircmpwn-go-bare): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iea3ac2489549fe4cb1b1ce216a998c30c9f996d6
2024-05-07 15:38:28 +01:00
2799f6c6e1
gnu: go-github-com-mattn-go-sqlite3: Update to 1.14.22.
...
* gnu/packages/golang-xyz.scm (go-github-com-mattn-go-sqlite3): Update to 1.14.22.
Change-Id: I01bf397b7d74db812883994deb2c2249adf14d1f
2024-05-07 15:38:27 +01:00
bea3defe23
gnu: Add go-github-com-pires-go-proxyproto.
...
* gnu/packages/golang-xyz.scm (go-github-com-pires-go-proxyproto): New variable.
Change-Id: Iec8e8ead7e18cbbd9be00ec398d11e632e4b2ac4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:27 +01:00
e78fb8223f
gnu: Add go-nhooyr-io-websocket.
...
* gnu/packages/golang-web.scm (go-nhooyr-io-websocket): New variable.
Change-Id: Ifced88b4d916b8593e4b65022cf419c8ae18a769
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:27 +01:00
c9bbfc9f3c
gnu: Add go-github-com-msteinert-pam.
...
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Id84648d258d2f1c7f2c9902e80dccb06642d7787
2024-05-07 15:38:27 +01:00
d12456bebd
gnu: Add go-github-com-sherclockholmes-webpush-go.
...
* gnu/packages/golang-web.scm (go-github-com-sherclockholmes-webpush-go): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ida07915e1659b79353dd267991bcb615ee5cc837
2024-05-07 15:38:27 +01:00
223c531ec4
gnu: Add go-github-com-golang-jwt-jwt.
...
* gnu/packages/golang-crypto.scm (go-github-com-golang-jwt-jwt-v4): New variable.
(go-github-com-golang-jwt-jwt-v4): Inherit from go-github-com-golang-jwt-jwt.
Change-Id: I2382208434859b7a9b9a314930fa8769072964c7
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:25 +01:00
014875b29e
gnu: psascan: Limit to 64-bit systems.
...
* gnu/packages/cpp.scm (psascan)[supported-systems]: New field.
Change-Id: I19eef41449a16b4440f3dd73cdb181c7c3383e84
2024-05-07 01:44:28 +03:00
51c711a328
gnu: bitmapperbs: Limit to x86_64-linux.
...
* gnu/packages/bioinformatics.scm (bitmapperbs)[supported-systems]: New
field.
Change-Id: I03484413e5af8e779fe0e5199e456eaab124e8b7
2024-05-07 01:31:20 +03:00
cc051064c5
gnu: grantlee: Fix build on some architectures.
...
* gnu/packages/qt.scm (grantlee)[source]: Add patch.
* gnu/packages/patches/grantlee-register-metaenumvariable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: Iecef53baeb023a80139ac70b9caefcfa7b79a3c6
2024-05-07 00:43:24 +03:00
0a5929033f
gnu: minimap2: Fix make-flags.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust the
make-flags to contain actual build flags for all architectures.
Change-Id: I5b4077a25d6d46172ff566ceaa16629ebf066721
2024-05-06 23:53:04 +03:00
6571231f2d
gnu: minimap2: Update to 2.28.
...
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.28.
[arguments]: Adjust custom 'install phase to not delete non-existent
file. Remove trailing #t from phase.
Change-Id: Ie6cc21f2b761532f08967efea54d3a12b944f213
2024-05-06 23:42:22 +03:00
a4c0a58594
gnu: proteinortho: Add tunable property.
...
* gnu/packages/bioinformatics.scm (proteinortho)[properties]: Add
tunable? flag.
Change-Id: If59d5785c8c8e4aedb5b88479da6fba0e9754640
2024-05-06 23:16:57 +03:00
dd23efe020
gnu: proteinortho: Update to 6.3.2.
...
* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.3.2.
[source]: Adjust snippet to also delete lapack source tarball.
[arguments]: Rewrite using g-expressions. Add flag to run tests
sequentially. Adjust make-flags for cross-compiling and to set PREFIX.
Delete 'configure and custom 'configure phase. Remove trailing #t from
phases.
Change-Id: I40249e5ac92c26223119b81b4677c08d5ab230e6
2024-05-06 23:16:56 +03:00
d967ffb367
gnu: python-http-client: Fix test suite.
...
* gnu/packages/python-web.scm (python-http-client)[arguments]: Add a
phase to adjust the tests to not be dependant on the current date.
Change-Id: I94f512c9b019173f6e15e04791dbfc662fc93c89
2024-05-06 23:16:56 +03:00
a9c89cd11b
gnu: r-lpsymphony: Fix building on some architectures.
...
* gnu/packages/bioconductor.scm (r-lpsymphony) [arguments]: When
building for aarch64-linux or riscv64-linux replace all the config.guess
and config.sub files with newer ones.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.
Change-Id: Iaddda8c6d7330fb02bdd83733e7fa70b851a82f2
2024-05-06 23:16:55 +03:00
3053c40995
gnu: mouseloupe: Update the package style.
...
* gnu/packages/accessibility.scm (mouseloupe)[arguments]: Switch to
g-expressions.
Change-Id: I9af4433b2effbcbd9c0178ea3f02d81e202f4c05
2024-05-06 23:16:55 +03:00
2d5b779b45
gnu: mouseloupe: Don't hardcode building for i686.
...
* gnu/packages/accessibility.scm (mouseloupe)[source]: Add snippet to
remove flag from the Makefile explicitly building for i686.
Change-Id: Iec5a5002a51ff7f2be469f6815e6ff6166b32876
2024-05-06 23:16:54 +03:00
284938bb72
gnu: wolf-shaper: Add tunable property.
...
* gnu/packages/music.scm (wolf-shaper)[properties]: Add tunable? flag.
Change-Id: I32b26effaa18b814fcca8f4cd88b083969682a81
2024-05-06 23:16:54 +03:00
f4c954e314
gnu: wolf-shaper: Fix building on more architectures.
...
* gnu/packages/music.scm (wolf-shaper)[arguments]: Add make-flag to
disable optimizations.
Change-Id: I2976d1769324765df3f0aa8b636f528526bdfd78
2024-05-06 23:16:53 +03:00
5a69a52d74
gnu: solidity: Update to 0.8.25.
...
* gnu/packages/solidity.scm (solidity): Update to 0.8.25.
[arguments]: Add configure-flag to allow an older version of z3.
[inputs]: Replace fmt-8.0 with fmt.
Change-Id: I1501d16323566c066c58c1c4bbf90dd17a23f021
2024-05-06 23:16:53 +03:00
614bd4a777
gnu: solidity: Allow a newer version of jsoncpp.
...
* gnu/packages/solidity.scm (solidity)[arguments]: Add a phase to allow
newer versions of jsoncpp.
Change-Id: I4f7b5b3685f8d784da221ccb0eea1ba297e3e0b8
2024-05-06 23:16:53 +03:00
d3bfc94271
gnu: galera: Update to 26.4.18.
...
* gnu/packages/databases.scm (galera): Update to 26.4.18.
[inputs]: Move check from here ...
[native-inputs]: ... to here.
Change-Id: Iac2ce8e1ebbe0e4059b26b7e83afbdafea19641b
2024-05-06 23:16:52 +03:00
f55af58045
gnu: strongswan: Remove pre-generated files.
...
* gnu/packages/vpn.scm (strongswan)[source]: Add snippet to remove some
pre-generated files.
[native-inputs]: Add bison, flex, perl.
Change-Id: Ifc316a1c309f8687418455189457cee83b06bfa1
2024-05-06 23:16:52 +03:00
2423b0bb2d
gnu: strongswan: Fix building on non-x86 architectures.
...
* gnu/packages/vpn.scm (strongswan)[arguments]: When building for
not-x86 architectures disable aesni support. Also adjust the test suite
so we skip the RSA tests.
Change-Id: Idbc7bb229b83b0f43f3286b94fa4da077711c0ed
2024-05-06 23:16:51 +03:00
38733b5039
gnu: gnome-js-common: Fix build on some architectures.
...
* gnu/packages/gnome.scm (gnome-js-common)[arguemnts]: When building for
aarch64-linux or riscv64-linux replace the config.guess and config.sub
files.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.
Change-Id: Ia27b0fec7d0b50e9e4ab7ea7329d390ddc482795
2024-05-06 23:16:51 +03:00
c6d99eb371
gnu: theorafile: Fix cross-compiling.
...
* gnu/packages/video.scm (theorafile)[arguments]: Use cc-for-target.
Change-Id: I191bd177263e57f1193fce1d360ba161726f39b9
2024-05-06 23:16:50 +03:00
ee926b19ad
gnu: theorafile: Use test-target.
...
* gnu/packages/video.scm (theorafile)[arguments]: Add test-target.
Remove custom 'check phase.
Change-Id: Ia741bc7c202a418801672ffcf88bd7b8577c359e
2024-05-06 23:16:50 +03:00
9a19c50b9b
gnu: theorafile: Update to 0.0.0-2.ea5fd6d.
...
* gnu/packages/video.scm (0.0.0-2.ea5fd6d): Update to 0.0.0-2.ea5fd6d.
[arguments]: Remove trailing #t from phases.
Change-Id: I5dc34627d3d3e264743fa65c480872da2182ada0
2024-05-06 23:16:49 +03:00
88a4a46ed4
gnu: elisa: Update to 23.08.5.
...
* gnu/packages/kde-multimedia.scm (elisa): Update to 23.08.5.
[arguments]: Remove trailing #t from phases.
Change-Id: I4de0b34ce52baefeed5aaeb493fa54d14515fcef
2024-05-06 23:16:49 +03:00
ad330f7d08
gnu: rednotebook: Correctly wrap the binary.
...
* gnu/packages/rednotebook.scm (rednotebook)[arguments]: Adjust the
'wrap-with-library-paths phase to use the correct webkitgtk input.
Remove trailing #t.
Change-Id: I3d245f279ca704ab34023a8977a2c6f1003302ab
2024-05-06 23:16:48 +03:00
af8ad9148f
gnu: libvisual-plugins: Reformat with 'guix style'.
...
* gnu/packages/gstreamer.scm (libvisual-plugins): Reformat package using
'guix style'.
Change-Id: I91cb02b22bc50c71ad314d2a48207a77e3700a41
2024-05-06 23:16:48 +03:00
a2f81c1b9d
gnu: libvisual-plugins: Build with librsvg-for-system.
...
* gnu/packages/gstreamer.scm (libvisual-plugins)[inputs]: Replace
librsvg with librsvg-for-system.
Change-Id: Ie4199e6f52236dfae086b1425607b6e0f1f9129b
2024-05-06 23:16:47 +03:00
f1efd142b6
gnu: libvisual-plugins: Disable oinksie plugin.
...
* gnu/packages/gstreamer.scm (libvisual-plugins)[arguments]: Add a
configure-flag to disable the oinksie plugin.
Change-Id: I6181384c715eeeceba81d196960e4cd0148cc55a
2024-05-06 23:16:47 +03:00
2b6ca9db79
gnu: darkice: Fix build.
...
* gnu/packages/audio.scm (darkice)[arguments]: Add a make-flag to use an
earlier C++ standard.
Change-Id: I2b7be09be9deb4637e996a9a697e31efed5c5508
2024-05-06 23:16:46 +03:00
d5d2963826
gnu: wmfire: Fix build.
...
* gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
* gnu/packages/patches/wmfire-dont-inline-draw-fire.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: I3e937c5e9dbd8a5e2eebfd92213407d9477a47ab
2024-05-06 23:16:46 +03:00
ae1873558c
gnu: varnish: Fix build on i686-linux.
...
* gnu/packages/web.scm (varnish)[arguments]: When building for
i686-linux add a make-flag to adjust the CFLAGS.
Change-Id: I9dbd9566de33f2ad7445e3a7ee8bc2d01e430cc9
2024-05-06 23:16:45 +03:00
600860e8ac
gnu: varnish-modules: Update to 0.22.0.
...
* gnu/packages/web.scm (varnish-module): Update to 0.22.0.
Change-Id: I0bd60aed1d4243887a6501f4561ec5c83f1a3c06
2024-05-06 23:16:45 +03:00
f14513b660
gnu: graphene: Fix build on armhf-linux.
...
* gnu/packages/gtk.scm (graphene)[arguments]: When building for
armhf-linux add a configure-flag to disable neon optimizations.
Change-Id: I42b412d3f7536180e959e268b68f2c292edda749
2024-05-06 23:16:31 +03:00
c5db054e64
gnu: guile-jwt: Update to 0.3.0.
...
* gnu/packages/guile-xyz.scm (guile-jwt): Update to 0.3.0.
[propagated-inputs]: Add guile-gcrypt.
Change-Id: I694b63437f51121dd3440ccb32ce279583596586
2024-05-06 21:56:59 +02:00
752c089b4a
Revert "gnu: pcsc-lite: Update to 2.1.0."
...
This reverts commit a8f0e8a31d
2024-05-06 19:01:38 +02:00
28e74f49fe
Revert "gnu: hwdata: Update to 0.378."
...
This reverts commit 7ed5a336bd
2024-05-06 14:29:25 +02:00
Ricardo Wurmus
Artyom V. Poptsov
Sharlatan Hellseher
Jesse Eisses
Efraim Flashner
Nicolas Goaziou