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Author SHA1 Message Date
Ricardo Wurmus
4f7efc8db9
gnu: r-biocviews: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocviews)[propagated-inputs]: Sort them.
 2023-06-02 12:51:15 +02:00
Ricardo Wurmus
52546a4512
gnu: r-biocparallel: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocparallel)[propagated-inputs]: Sort
them.
 2023-06-02 12:50:47 +02:00
Ricardo Wurmus
93804e978f
gnu: r-mbecs: Fix indentation. 
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and
spelling of comment.
 2023-06-01 09:21:57 +02:00
Mădălin Ionel Patrașcu
10d3f8aa7b
gnu: Add r-mbecs. 
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
 2023-06-01 09:15:26 +02:00
Ricardo Wurmus
aae17d3efa
gnu: r-abn: Update to 2.7-5. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-5.
[native-inputs]: Add r-r-rsp.
 2023-05-31 18:19:53 +02:00
Ricardo Wurmus
85a70cbde6
gnu: r-ggpicrust2: Update to 1.6.5. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.5.
 2023-05-31 18:19:53 +02:00
Ricardo Wurmus
9dcb09076d
gnu: r-valr: Update to 0.6.8. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.8.
 2023-05-31 18:19:53 +02:00
Mădălin Ionel Patrașcu
9d05f9a9f5
gnu: Add r-dropletutils. 
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
 2023-05-12 09:36:26 +02:00
Ricardo Wurmus
7e421c1f5a
gnu: r-scran: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0880f325b7
gnu: r-scuttle: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
8c7ddd3a44
gnu: r-chromvar: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
d850b72346
gnu: r-hdf5array: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
3bdd6fb256
gnu: r-s4vectors: Update to 0.38.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
da8638facb
gnu: r-preprocesscore: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
6b2a0aab19
gnu: r-iclusterplus: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c96ebf4cf9
gnu: r-clusterprofiler: Update to 4.8.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
f7642f34d0
gnu: r-dose: Update to 3.26.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4228100215
gnu: r-linnorm: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c6c69d4cc6
gnu: r-dnacopy: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c846a694a7
gnu: r-scaledmatrix: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
95d5a918a2
gnu: r-glmgampoi: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
75869a8a94
gnu: r-oligo: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
a4b04c06ab
gnu: r-summarizedexperiment: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c70787f552
gnu: r-scmap: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0fd93c81be
gnu: r-rhdf5filters: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4b7a06b839
gnu: r-pcaexplorer: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
37f44c278f
gnu: r-impute: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ef3ce37eeb
gnu: r-genefilter: Update to 1.82.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
56524dc465
gnu: r-edger: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
d9d920403a
gnu: r-deseq2: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a9e68f103
gnu: r-biocparallel: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
69e954bb0a
gnu: r-annotationdbi: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
931ac0735f
gnu: r-densvis: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
06b903963c
gnu: r-delayedarray: Update to 0.26.2. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
01faf51999
gnu: r-bandits: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
13dde61328
gnu: r-bambu: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6401f048cf
gnu: r-amplican: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0861bca905
gnu: r-affyplm: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a58dc01d3
gnu: Add r-s4arrays. 
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6aa299aa1c
gnu: r-ggpicrust2: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
bd3ef47877
gnu: r-biomartr: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
 2023-05-09 15:24:13 +02:00
Mădălin Ionel Patrașcu
0e09e8ab15
gnu: Add r-multibac. 
* gnu/packages/bioconductor.scm (r-multibac): New variable.
 2023-05-08 10:34:06 +02:00
Ricardo Wurmus
3f8c4899a9
gnu: Add r-ggpicrust2. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
9bb428ad68
gnu: Add r-microbiomestat. 
* gnu/packages/bioconductor.scm (r-microbiomestat): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
62ed97c07d
gnu: Add r-lefser. 
* gnu/packages/bioconductor.scm (r-lefser): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
85c137adde
gnu: r-motifstack: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
f2ad160acd
gnu: r-chippeakanno: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access. 
ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
 2023-04-29 20:28:08 +02:00