1b16727c18
gnu: units: Update to 2.21.
...
* gnu/packages/maths.scm (units): Update to 2.21.
2020-11-17 22:21:22 +01:00
dc2de508a3
gnu: z3: Update to 4.8.9.
...
* gnu/packages/maths.scm (z3): Update to 4.8.9.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-16 21:19:45 +00:00
7ea957e2c5
gnu: superlu: Update to 5.2.2.
...
* gnu/packages/maths.scm (superlu): Update to 5.2.2.
2020-11-15 00:38:32 +01:00
c6843f1751
gnu: python-petsc4py: Fix build with python 3.8.
...
* gnu/packages/maths.scm (python-petsc4py)[source]: Add snippet.
[native-inputs]: New field.
2020-11-11 09:28:06 +00:00
d50ad6a7c6
gnu: netcdf-fortran: Update to 4.5.3.
...
This allows the package to build with netcdf 4.7.4.
* gnu/packages/maths.scm (netcdf-fortran): Update to 4.5.3.
2020-10-26 15:58:08 +00:00
a9291a28b2
gnu: netcdf: Update to 4.7.4.
...
This will fix an issue building qgis.
* gnu/packages/maths.scm (netcdf): Update to 4.7.4.
[source]: Remove the netcdf-tst_h_par.patch, also change the naming of the
source tarball, as the name seems to have changed for recent releases.
[inputs]: Update hdf5 and add curl.
* gnu/packages/patches/netcdf-tst_h_par.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove deleted patch.
2020-10-26 15:57:27 +00:00
c5372cd488
gnu: hdf5: Default to 1.10.
...
This is a followup to 5930963555
2020-10-23 16:35:39 +02:00
229e04c66e
gnu: gmsh: Update to 4.6.0.
...
Gmsh bundles METIS 5 released with Apache License 2.0 since upstream commit
eaff7f6477fe876991615cfa4b5832bd5f12994b. Instead, Gmsh is linked with the
package 'metis'.
* gnu/packages/maths.scm (gmsh): Update to 4.6.0.
(propagated-inputs): Replace 'opencascade-oce' by 'opencascade-occt', add
'metis'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-08 12:26:56 +02:00
786a04c9ae
gnu: SuiteSparse: Update to 5.8.1.
...
From 0d8692dfebc6ac4b515c06612ab8da4c898719eb Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Tue, 29 Sep 2020 11:54:38 +0000
Subject: [PATCH] gnu: SuiteSparse: Update to 5.8.1.
* gnu/packages/maths.scm (suitesparse): Update to 5.8.1.
[arguments]: Remove unnecessary flag and use default blas and lapack.
[inputs]: Add new dependencies for SLIP_LU component.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-01 12:45:38 +02:00
1628d57bb5
gnu: Fix package references.
...
* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package
inputs.
* gnu/packages/astronomy.scm (xplanet),
* gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb),
* gnu/packages/bioconductor.scm (r-cummerbund),
* gnu/packages/chicken.scm (chicken),
* gnu/packages/conky.scm (conky),
* gnu/packages/cran.scm (r-latex2exp),
* gnu/packages/crates-io.scm (rust-rgb),
* gnu/packages/databases.scm (mariadb),
* gnu/packages/diffoscope.scm (reprotest),
* gnu/packages/file-systems.scm (glusterfs),
* gnu/packages/finance.scm (electron-cash),
* gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo),
* gnu/packages/geo.scm (grass),
* gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue),
* gnu/packages/gnucash.scm (aqbanking),
* gnu/packages/image.scm (mtpaint),
* gnu/packages/kde-internet.scm (kopete, ktorrent),
* gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer),
* gnu/packages/linphone.scm (liblinphone),
* gnu/packages/maths.scm (ppl),
* gnu/packages/mercury.scm (mercury-minimal),
* gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins,
spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2),
* gnu/packages/networking.scm (restinio),
* gnu/packages/prolog.scm (swi-prolog),
* gnu/packages/python-web.scm (gunicorn),
* gnu/packages/python-xyz.scm (python-docusign-esign),
* gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable),
* gnu/packages/sagemath.scm (python-cypari2),
* gnu/packages/skarnet.scm (s6-linux-init),
* gnu/packages/vpn.scm (sshuttle),
* gnu/packages/web.scm (libcyaml),
* gnu/packages/xdisorg.scm (kbdd),
* gnu/packages/xorg.scm (xpra): Same.
2020-09-30 09:28:26 +03:00
ade7638d84
Revert "gnu: openblas: Update to 0.3.10."
...
This reverts commit c59e9f0a03
2020-09-18 14:05:51 +02:00
c59e9f0a03
gnu: openblas: Update to 0.3.10.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 08:57:48 +02:00
34d150dcb2
gnu: hdf5: Update to 1.10.7.
...
Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
2020-09-17 11:37:02 -05:00
0a7acf95db
gnu: metamath: Update to 0.192.
...
* gnu/packages/maths.scm (metamath): Update to 0.192.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-08 12:12:36 +03:00
9bb7534a3d
gnu: Add libflame.
...
* gnu/packages/maths.scm (libflame): New variable.
2020-08-27 18:19:09 +03:00
f37e2388d0
gnu: lrslib: Update to 7.1.
...
* gnu/packages/maths.scm (lrslib): Update to 7.1.
2020-08-27 14:53:54 +02:00
253fcfe6fe
gnu: octave: Remove unneeded 'source' field.
...
* gnu/packages/maths.scm (octave)[source]: Remove. It had been
unnecessary since b66741edc9
2020-08-26 00:51:57 +02:00
51c55cedda
gnu: netcdf-parallel-openmpi: Allow MPI tests to pass.
...
* gnu/packages/maths.scm (netcdf-parallel-openmpi)[arguments]: Add
'mip-setup' phase.
2020-08-26 00:51:57 +02:00
5930963555
gnu: hdf5-parallel-openmpi: Update to 1.10.6.
...
* gnu/packages/maths.scm (hdf5-parallel-openmpi): Inherit from HDF5-1.10.
2020-08-26 00:51:57 +02:00
4788e55420
gnu: hdf5: Use 'package/inherit' for variants.
...
* gnu/packages/maths.scm (hdf5-1.10, hdf5-parallel-openmpi): Use
'package/inherit'.
2020-08-26 00:51:56 +02:00
3b8eea1c40
gnu: hdf5: Distinguish the default hdf5 version.
...
* gnu/packages/maths.scm (hdf5): Rename to...
(hdf-1.8): ... this.
(hdf5-1.10): Adjust accordingly.
(hdf5): New variable.
2020-08-26 00:51:56 +02:00
e79fe4f675
gnu: wxmaxima: Update to 20.06.6.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.06.6.
[arguments]: Add 'patch-doc-path phase.
2020-08-16 17:30:55 -04:00
7294cbecdd
gnu: Add veusz.
...
* gnu/packages/maths.scm (veusz): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16 09:36:21 +02:00
698673699e
gnu: Add clapack.
...
* gnu/packages/maths.scm (clapack): New variable.
2020-08-10 21:58:38 +02:00
abe3c5ed7d
gnu: mcrl2: Update to 202006.0.
...
* gnu/packages/maths.scm (mcrl2): Update to 202006.0.
2020-08-04 17:02:09 +02:00
c1f38577c8
gnu: Add sleef.
...
* gnu/packages/maths.scm (sleef): New variable.
Signed-off-by: Brett Gilio <brettg@gnu.org>
2020-07-23 23:01:50 -05:00
fff4fcc4e2
gnu: java-junit: Install from pom file.
...
* gnu/packages/java.scm (java-junit)[arguments]: Replace install phase.
(java-hamcrest-core)[arguments]: Replace install phase.
(java-hamcrest-library)[arguments]: Replace install phase.
(java-cisd-jhdf5, java-commons-math3, java-commons-collections4)
(java-commons-io, java-commons-exec-1.1, java-commons-exec)
(java-commons-lang3, java-commons-codec, java-native-access)
(java-native-access-platform, java-hamcrest-all): Change junit and hamcrest
jar location accordingly.
(java-hamcrest-all): Use old install phase of java-hamcrest-core.
* gnu/packages/maths.scm (java-hdf): Change junit and hamcrest jar
location accordingly.
2020-07-17 04:10:51 +02:00
b0e7b6992f
gnu: Remove ".git" from " https://github/…/….git ".
...
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs. Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
2020-07-12 23:08:15 +02:00
b17a48d035
gnu: ruby-asciimath: Update to 2.0.1.
...
* gnu/packages/maths.scm (ruby-asciimath): Update to 2.0.1.
[arguments]: Remove.
[native-inputs]: Remove bundler, add ruby-nokogiri.
2020-07-11 14:26:57 -04:00
1480d212e8
gnu: qalculate-gtk: Fix typo in description.
...
* gnu/packages/maths.scm (qalculate-gtk)[description]: Fix typo.
2020-07-09 14:53:33 +02:00
6667576b66
gnu: metamath: Update to 0.183.
...
* gnu/packages/maths.scm (metamath): Update to 0.183.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-07-07 14:03:56 +02:00
d277c00ec9
gnu: Add metamath.
...
* gnu/packages/maths.scm (metamath): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-07-01 12:56:10 +02:00
21131e9c6d
gnu: maxima: Update to 5.44.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.44.0.
2020-06-30 23:23:57 -04:00
352e09a5b0
gnu: xaos: Add a source file-name.
...
* gnu/packages/maths.scm (xaos)[source]: Add file-name field.
2020-06-23 15:54:38 +03:00
58cb52a31d
gnu: ipopt: Fix source URI.
...
* gnu/packages/maths.scm (ipopt)[source]: Fix URI.
2020-06-10 17:34:41 +02:00
d5fd9c7223
gnu: ipopt: Use HTTPS home page URI.
...
* gnu/packages/maths.scm (ipopt)[home-page]: Use HTTPS URI.
2020-06-10 17:27:41 +02:00
49de32748d
gnu: xaos: Update to 4.0.
...
* gnu/packages/maths.scm (xaos): Update to 4.0.
[source]: Use git-fetch.
[native-inputs]: Add qtbase and qttools.
[arguments]: Remove #:make-flags options; replace 'configure' phase; add
'make-qt-deterministic' and 'install-data' phases.
[home-page]: Update URL.
2020-05-29 20:06:38 -04:00
bb9f9e1d1b
gnu: clp: Update to 1.17.6.
...
* gnu/packages/maths.scm (clp): Update to 1.17.6.
2020-05-29 08:08:17 +02:00
fadd962f4b
gnu: hdf4: Provide an absolute reference to libjpeg.
...
* gnu/packages/maths.scm (hdf4)[arguments]: Add phase
'provide-absolute-libjpeg-reference'.
2020-05-27 21:49:56 +02:00
4b01930f54
gnu: nauty: Update to 2.7r1.
...
* gnu/packages/maths.scm (nauty): Update to 2.7r1.
[arguments]: Prevent using "-march-native". Install new executable.
2020-05-27 17:05:32 +02:00
1bbf7e137d
gnu: wxmaxima: Update to 20.04.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.04.0.
2020-05-25 18:09:46 -04:00
9e91983055
gnu: qhull: Update to 2019.1
...
* gnu/packages/maths.scm (qhull): update to 2019.1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-25 23:00:30 +02:00
f0a9cb9cf0
gnu: gsl: Disable failing tests on powerpc.
...
* gnu/packages/maths.scm (gsl)[arguments]: Skip the same set of tests on
powerpc as skipped on aarch64.
2020-05-17 20:23:17 +03:00
0fe654ebcd
gnu: z3: Update to 4.8.8.
...
* gnu/packages/maths.scm (z3): Update to 4.8.8.
2020-05-16 15:05:05 +02:00
3c986a7dc2
mailmap: Update entries for Nikita.
...
* .mailmap: change email and name for Nikita.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm,
gnu/packages/check.scm, gnu/packages/cinnamon.scm,
gnu/packages/compression.scm, gnu/packages/crypto.scm,
gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm,
gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm,
gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-05-13 09:30:26 +03:00
1a75fc8442
gnu: glm: Update to 0.9.9.8.
...
* gnu/packages/patches/glm-restore-install-target.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (glm): Update to 0.9.9.8.
[arguments]: New field.
2020-05-13 00:57:15 +02:00
ba40ce5b2c
gnu: flann: Update to 1.9.1.
...
* gnu/packages/maths.scm (flann): Update to 1.9.1.
[source]: Use 'git-fetch'.
[home-page]: Change to github.com.
2020-05-10 16:08:37 +02:00
f8bb53caad
gnu: flann: Remove "octave" output.
...
Octave support currently fails to build and is not used by any other
package in Guix.
* gnu/packages/maths.scm (flann)[outputs]: Remove "octave" output.
[inputs]: Remove OCTAVE-CLI.
[arguments]: Remove 'set-octave-directory' phase.
2020-05-10 16:08:37 +02:00
8bf8cd9b85
Merge branch 'master' into core-updates
...
Conflicts:
gnu/local.mk
gnu/packages/backup.scm
gnu/packages/emacs-xyz.scm
gnu/packages/guile.scm
gnu/packages/lisp.scm
gnu/packages/openldap.scm
gnu/packages/package-management.scm
gnu/packages/web.scm
gnu/packages/xorg.scm
2020-04-30 23:47:49 +02:00
0b2c883828
gnu: Add hdf5-blosc.
...
* gnu/packages/maths.scm (hdf5-blosc): New variable.
2020-04-28 12:23:28 +02:00
030f6f489f
Merge branch 'master' into core-updates
...
Conflicts:
etc/news.scm
gnu/local.mk
gnu/packages/bootloaders.scm
gnu/packages/linphone.scm
gnu/packages/linux.scm
gnu/packages/tls.scm
gnu/system.scm
2020-04-23 13:33:09 +02:00
6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7
...
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.
...
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 20:05:09 +02:00
109bf6a0e7
gnu: dune-localfunctions: Fix build failure.
...
* gnu/packages/maths.scm (dune-localfunctions)[arguments]: Add phase
'hide-gfortran'.
2020-04-14 22:33:01 +02:00
f7cbf403ef
gnu: dune-istl: Fix build failure.
...
* gnu/packages/maths.scm (dune-istl)[arguments]: Add phase 'hide-gfortran'.
2020-04-14 22:33:01 +02:00
fc58cb5bd2
Merge branch 'master' into core-updates
2020-04-13 20:26:21 +02:00
48b0d9c071
gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks".
...
* gnu/packages/maths (dune-subgrid): Fix grammar.
2020-04-12 13:34:56 -07:00
67e2e1718c
gnu: libqalculate: Fix spelling of "uncertainty".
...
* gnu/packages/maths (libqalculate): Fix typo.
2020-04-12 12:03:37 -07:00
2778302399
Merge branch 'master' into core-updates
...
Conflicts:
etc/news.scm
gnu/local.mk
gnu/packages/check.scm
gnu/packages/cross-base.scm
gnu/packages/gimp.scm
gnu/packages/java.scm
gnu/packages/mail.scm
gnu/packages/sdl.scm
gnu/packages/texinfo.scm
gnu/packages/tls.scm
gnu/packages/version-control.scm
2020-04-08 13:00:50 +02:00
b60e2d480a
gnu: Add dsfmt.
...
* gnu/packages/maths.scm (dsfmt): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-07 17:31:55 +03:00
a533c5a183
gnu: octave-cli: Fix build.
...
* gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO.
[arguments]: Add "--enable-link-all-dependencies" in #:configure-flags.
2020-04-05 22:45:15 +02:00
525e83ec83
gnu: scotch: Make some inputs native.
...
* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-04 20:19:03 +02:00
0ad05c15e3
gnu: GSL: Remove unnecessary (%current-system) call.
...
* gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable
instead of %CURRENT-SYSTEM.
2020-04-03 18:32:56 +02:00
72c71d2497
gnu: Add qalculate-gtk.
...
* gnu/packages/maths.scm (qalculate-gtk): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-03 16:26:38 +02:00
70c98efaf6
gnu: Add libqalculate.
...
* gnu/packages/maths.scm (libqalculate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-03 16:26:38 +02:00
c745b6f62c
gnu: GSL: Disable failing tests on i686-linux and aarch64-linux.
...
This follows up commit 7ad3c81240
2020-04-03 15:53:10 +02:00
ae0badf5bb
Merge branch 'master' into core-updates
...
Conflicts:
gnu/packages/admin.scm
gnu/packages/commencement.scm
gnu/packages/guile.scm
gnu/packages/linux.scm
gnu/packages/package-management.scm
gnu/packages/pulseaudio.scm
gnu/packages/web.scm
2020-03-30 12:17:33 +02:00
8b87d095b3
gnu: z3: Fix build determinism.
...
* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set
PYTHONHASHSEED=0.
2020-03-29 20:35:33 +02:00
53b9df20c1
gnu: Remove more packages deprecated for over almost a year.
...
* gnu/packages/games.scm (armagetron-advanced)
(cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts)
(the-battle-for-wesnoth, the-battle-for-wesnoth-server)
(project-starfighter, kiki-the-nano-bot, fish-fillets-ng)
(dungeon-crawl-stone-soup): Let's forget this ever happened.
* gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name)
(magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb)
(ert-runner, groovy-emacs-modes): Remove variable.
* gnu/packages/engineering.scm (emacs-emms-player-simple-mpv)
(emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise.
* gnu/packages/finance.scm (monero-core): Likewise.
* gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles)
(tales-of-maj-eyal, battle-tanks, the-legend-of-edgar)
(gnome-tweak-tool): Likewise.
* gnu/packages/gnuzilla.scm (conkeror): Likewise.
* gnu/packages/guile-xyz.scm (mcron2): Likewise.
* gnu/packages/image.scm (pngcrunch): Likewise.
* gnu/packages/linux.scm (eudev-with-hwdb): Likewise.
* gnu/packages/maths.scm (qtoctave): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Likewise.
* gnu/packages/php.scm (php-with-bcmath): Likewise.
* gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next):
Likewise.
* gnu/packages/video.scm (livestreamer): Likewise.
* gnu/packages/virtualization.scm (lookingglass): Likewise.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
(newsboat)[description]: Remove historical footnote.
2020-03-29 18:40:56 +02:00
c2cf286c62
Update email address and Savannah handle for Amin Bandali.
...
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
2020-03-28 16:30:07 -04:00
255fb17b25
gnu: armadillo: Fix typo in description.
...
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
2020-03-28 21:27:33 +01:00
18af687037
Merge branch 'master' into core-updates
...
Conflicts:
gnu/packages/icu4c.scm
gnu/packages/man.scm
gnu/packages/python-xyz.scm
guix/scripts/environment.scm
guix/scripts/pack.scm
guix/scripts/package.scm
guix/scripts/pull.scm
guix/store.scm
2020-03-27 00:12:15 +01:00
6607aad53c
gnu: wxmaxima: Update to 20.03.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
2020-03-22 19:22:42 -04:00
d19b14c834
Merge branch 'master' into core-updates
2020-03-21 22:16:02 +01:00
2aaa09f17d
gnu: hdf-eos2: Use HTTPS home page.
...
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
2020-03-21 03:09:51 +01:00
c4d769d359
Merge branch 'master' into core-updates
2020-03-18 19:41:08 +01:00
961d2ee269
Merge branch 'master' into core-updates
2020-03-14 13:13:40 +01:00
b471337dea
gnu: suitesparse: Build with cmake-minimal.
...
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
2020-03-14 11:55:33 +01:00
d3be522036
gnu: openlibm: Use HTTPS home page.
...
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
6ceb771657
gnu: define dune-*-openmpi packages
...
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
393dc1cc0b
gnu: dune-*: remove openmpi dependency
...
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
[arguments]: remove code to setup openmpi for tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
0a703c0486
gnu: dune-istl: Build with suitesparse
...
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
f1f9466e33
gnu: Add dune-subgrid
...
* gnu/packages/maths.scm (dune-subgrid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
07ebb75d17
gnu: Add dune-uggrid.
...
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
a669f6e27b
gnu: dune-*: set up MPI for tests
...
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
50b99c90c8
Merge branch 'master' into core-updates
2020-03-10 20:50:02 +01:00
80fafdba1c
gnu: speedcrunch: Use HTTPS home page.
...
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
5969598149
gnu: openblas: Use HTTPS home page.
...
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
2020-03-06 15:04:34 -05:00
df5a2e4f83
gnu: OpenBLAS: Update to 0.3.9.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.9.
2020-03-05 23:36:05 +01:00
aac148a87b
gnu: SuiteSparse: Update to 5.7.1.
...
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-04 18:08:13 -05:00
ebb7cf9e21
Merge branch 'master' into core-updates
2020-03-04 23:16:17 +01:00
f6b4d395fd
gnu: z3: Build the Python bindings
...
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
--pypkgdir flags to configure. To facilitate the latter, add
(guix build python-build-system) to #:modules and #:imported-modules.
2020-02-23 17:58:38 +01:00
b457f3cc16
gnu: Add vinci.
...
* gnu/packages/maths.scm (vinci): New variable.
2020-02-21 13:30:25 +01:00
087c94019d
gnu: OpenBLAS: Update to 0.3.8.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.8.
2020-02-15 22:02:56 +01:00
7edafc884c
Merge branch 'master' into core-updates
2020-02-14 19:05:45 +01:00
8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
2020-02-10 14:43:06 -05:00
52665d2b6b
Merge branch 'staging' into core-updates
2020-02-03 15:45:44 +01:00
aa2e83cce2
gnu: superlu-dist: Update to 6.2.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url. Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-31 09:17:16 -06:00
48fe5c36a2
gnu: superlu: Update upstream url.
...
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
2020-01-31 09:13:57 -06:00
Tobias Geerinckx-Rice
Martin Becze
Paul Garlick
Christopher Baines
Ludovic Courtès
zimoun
Greg Hogan
Efraim Flashner
Mathieu Othacehe
Eric Bavier
B. Wilson
Andreas Enge
Ludovic Courtès
Kei Kebreau
Vinicius Monego
Ricardo Wurmus
Jan (janneke) Nieuwenhuizen
Julien Lepiller
Maxim Cournoyer
Nicolas Goaziou
Marius Bakke
Ekaitz Zarraga
nikita
Marius Bakke
Felix Gruber
R Veera Kumar
Vagrant Cascadian
Nicolò Balzarotti
Vincent Legoll
Jakub Kądziołka
Amin Bandali