c3509c2148
gnu: valgrind: Update to 3.20.0.
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* gnu/packages/valgrind.scm (valgrind): Update to 3.20.0. Remove patch.
[arguments]<phases>: Remove trailing #t.
* gnu/packages/patches/valgrind-enable-arm.patch: Delete file.
* gnu/packages/valgrind.scm (dist_patch_DATA): Unregister patch.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-26 14:34:23 +02:00
50dcd1acd7
gnu: lz4: Remove valgrind from native-inputs.
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* gnu/compression.scm (lz4)[native-inputs]: Remove valgrind.
[arguments]<phases>: Remove trailing #t.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-26 14:34:08 +02:00
399e1b8e01
gnu: python-ipykernel: Fix build.
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* gnu/packages/python-xyz.scm (python-ipykernel)[build-system]: Use
pyproject-build-system.
[arguments]: Use pyproject-build-system modules; add build phase
'hide-zmq-deprecation-warnings.
2023-04-26 13:33:30 +02:00
c22765c933
news: Add 'de' translation.
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* etc/news.scm: Add German translation of core-updates entry.
2023-04-26 12:27:11 +02:00
4ef9fbcc35
gnu: python-jupyter-client: Disable one test.
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* gnu/packages/python-xyz.scm (python-jupyter-client)[arguments]: Begrudgingly
disable one failing test, because there is no information on why it fails.
2023-04-26 11:44:45 +02:00
cc79caccee
gnu: python-jupyter-client-bootstrap: Hide zmq deprecation warning.
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* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[arguments]:
Add phase 'hide-zmq-deprecation-warning.
2023-04-26 11:44:45 +02:00
358428c1ec
gnu: python-jupyter-client-bootstrap: Use pyproject-build-system.
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* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[build-system]:
Use pyproject-build-system.
2023-04-26 11:44:45 +02:00
5f0474ba87
news: Add entry for 'core-updates' merge.
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* etc/news.scm: Add entry.
2023-04-26 11:25:59 +02:00
5409ae48af
gnu: python-distributed: Fix build.
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* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
2023-04-26 11:17:41 +02:00
2bf96f2d9e
gnu: cppcheck: Update to 2.10.3.
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* gnu/packages/check.scm (cppcheck): Update to 2.10.3.
[home-page]: Update to new home-page.
2023-04-26 10:51:52 +03:00
8720e22fd0
gnu: cppcheck: Skip failing test.
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* gnu/packages/patches/check.scm (cppcheck)[source]: Add patch.
* gnu/packages/patches/cppcheck-disable-char-signedness-test.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-04-26 10:51:44 +03:00
ff4e463ddc
gnu: graphviz: Remove version 2.38.
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This is a follow-up to commit 370cb92eaa
2023-04-26 09:40:16 +02:00
8093c6ba21
gnu: lcov: Update to 1.16.
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* gnu/packages/code.scm (lcov): Update to 1.16.
2023-04-25 23:43:05 +02:00
9fcd51280f
gnu: perl-io-compress: Update to 2.204.
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* gnu/packages/perl-compression.scm (perl-io-compress): Update to 2.204.
2023-04-25 23:43:05 +02:00
70acf8b23a
gnu: perl-compress-raw-bzip2: Update to 2.204.
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* gnu/packages/perl-compression.scm (perl-compress-raw-bzip2): Update to
2.204.
2023-04-25 23:43:05 +02:00
6ea4228442
gnu: perl-compress-raw-zlib: Update to 2.204.
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* gnu/packages/perl-compression.scm (perl-compress-raw-zlib): Update to
2.204.
[arguments]: Remove.
2023-04-25 23:43:05 +02:00
e287a0e402
gnu: gnutls: Don't embed a phase inside another phase.
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* gnu/packages/tls.scm (gnutls)[arguments]: Adjust powerpc-linux phase
'increase-test-timeout to not be embedded inside another phase.
2023-04-25 23:32:17 +03:00
ccf64b6a8b
gnu: mpdevil: Add missing input.
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* gnu/packages/mpd.scm (mpdevil)[native-inputs]: Add gettext-minimal.
2023-04-25 23:08:45 +03:00
aeda325cf1
gnu: presage: Build with c++-14.
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* gnu/packages/fcitx.scm (presage)[arguments]: Adjust configure-flags to
use c++-14 cor CFLAGS and CXXFLAGS.
2023-04-25 23:01:56 +03:00
97323e5262
gnu: libpst: Fix python detection.
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* gnu/packages/mail.scm (libpst)[arguments]: Add a phase to detect newer
versions of python3.
[native-inputs]: Add autoconf, automake, gettext-minimal, libool.
2023-04-25 22:52:29 +03:00
72b1c9713b
gnu: perl-data-dumper: Update to 2.183.
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* gnu/packages/perl.scm (perl-data-dumper): Update to 2.183.
2023-04-25 21:18:36 +02:00
4598928a90
gnu: cwltool: Use pyproject-build-system.
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"setup.py install is deprecated. Use build and pip and other standards-based
tools." It then falls back to attempting to install packages via pip.
* gnu/packages/bioinformatics.scm (cwltool)[build-system]: Use
pyproject-build-system.
2023-04-25 21:18:36 +02:00
92a903499b
gnu: python-schema-salad: Use pyproject-build-system.
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The python-build-system fails with "setuptools.installer is
deprecated. Requirements should be satisfied by a PEP 517 installer." This,
in turn, causes all Python packages to be ignored and "pip install" to be
invoked for them.
* gnu/packages/bioinformatics.scm (python-schema-salad)[build-system]: Use
pyproject-build-system.
2023-04-25 21:18:35 +02:00
2ec69787aa
gnu: gfeeds: Add missing gettext-minimal.
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* gnu/packages/syndication.scm (gfeeds)[inputs]: Add gettext-minimal.
2023-04-25 21:09:13 +02:00
30a252760f
gnu: syndication-domination: Update to 1.0-1-7592032.
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* gnu/packages/syndication.scm (syndication-domination): Update to
1.0-1-7592032.
2023-04-25 21:09:13 +02:00
ff777165cb
gnu: evolution: Update to 3.46.4.
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* gnu/packages/gnome.scm (evolution): Update to 3.46.4.
2023-04-25 21:09:13 +02:00
916df2b9eb
gnu: evolution-data-server: Update to 3.46.4.
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* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.4.
2023-04-25 21:09:12 +02:00
5a1b246736
gnu: adapterremoval: Update to 2.3.3.
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* gnu/packages/bioinformatics.scm (adapterremoval): Update to 2.3.3.
[arguments]: Simplify.
[inputs]: Reformat.
2023-04-25 19:46:29 +02:00
d67b8788b3
gnu: ocaml-lwt: Add ocaml4.07 variant.
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* gnu/packages/ocaml.scm (ocaml-lwt)[properties]: New field.
(ocaml4.07-lwt): New variable.
2023-04-25 20:42:22 +03:00
52f6ccef82
gnu: perl-crypt-openssl-rsa: Update to 0.33.
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* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Update to 0.33.
2023-04-25 20:42:22 +03:00
fc80efe1a0
gnu: bedtools-2.18: Fix build.
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* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Fix operators in
'compatibility phase.
2023-04-25 19:41:05 +02:00
f2e90d6f43
gnu: hisat: Build with GCC 10.
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* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
2023-04-25 19:30:43 +02:00
0a4fa99b39
gnu: kallisto: Update to 0.48.0.
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* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0.
[arguments]: Remove trailing #T from build phase.
2023-04-25 19:28:42 +02:00
7ae5325bf1
gnu: bpp-core: Build with GCC 10.
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* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
2023-04-25 19:12:57 +02:00
2c09cc19e6
gnu: vcflib: Update to 1.0.9.
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* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9.
[source]: Update snippet.
[inputs]: Add curl, pybind11, and wfa2-lib.
[arguments]: Adjust and reformat.
2023-04-25 19:10:19 +02:00
4ad51f5914
gnu: tabixpp: Update to 1.1.2.
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* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2.
[source]: Simplify snippet.
[inputs]: Add curl.
[arguments]: Simplify and reformat.
2023-04-25 19:10:19 +02:00
8664c6230e
gnu: Add wfa2-lib.
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* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
2023-04-25 19:10:18 +02:00
8c5ba69d6e
gnu: biber: Fix build with new Perl.
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* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from
upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7.
* gnu/packages/tex.scm (biber): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-25 18:42:22 +02:00
74038cf66e
gnu: gcc: Do not build gcov on MinGW.
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* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when
targetting mingw.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:20:19 +02:00
7f0fbd0463
gnu: nerd-dictation: Add package variants.
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* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove.
(nerd-dictation-gexp): New procedure.
(nerd-dictation/xdotool, nerd-dictation/sox-xdotool)
(nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
9be1ee6a49
services: tor: Deprecate 'tor-hidden-service' procedure.
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Due to (now renamed) 'hidden-service' record type not being exported, the only
way Onion services (formely hidden services) could have worked is through the
now deprecated 'tor-hidden-service' procedure.
This commit updates the Tor service documentation, corrects some inconsistently
named accessors in <tor-configuration> record-type, renames and refactors
tor-hidden-service-configuration to tor-onion-service-configuration using
define-configuration and also exports it, allowing Onion services to be
configured directly within a <tor-configuration> record.
Lastly, it also deprecates the 'tor-hidden-service' procedure.
* doc/guix.texi (Networking Services): Substitute mentions of “Hidden services”
with “Onion Services”. Add a Tor Onion service configuration example.
Document <tor-onion-service-configuration>. Remove mention of
'tor-hidden-service' procedure.
* gnu/services/networking.scm: Export tor-configuration-tor,
tor-configuration-config-file, tor-configuration-hidden-services,
tor-configuration-socks-socket-type, tor-configuration-control-socket-path,
tor-onion-service-configuration, tor-onion-service-configuration?,
tor-onion-service-configuration-name, tor-onion-service-configuration-mapping.
(<tor-configuration>)[control-socket?]: Rename accessor.
(<hidden-service>): Replace with …
(<tor-onion-service-configuration>): … this.
(tor-configuration->torrc): Update record-type name.
(tor-activation): Ditto.
(tor-hidden-service-type): Remove variable.
(tor-hidden-service): Deprecate procedure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
c354a345b9
gnu: ghc-8.10: Avoid testsuite timeouts on i686.
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* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase
'skip-failing-tests-i686-cuirass.
2023-04-25 16:54:57 +02:00
3a37e3ecd8
gnu: lofreq: Set file timestamps to 1980s.
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This keeps Python from complaining: "ZIP does not support timestamps before
1980".
* gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase
'set-source-file-times-to-1980.
2023-04-25 16:17:49 +02:00
0ad4a4d155
gnu: lofreq: Drop input labels.
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* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
2023-04-25 16:17:49 +02:00
1fca85cd88
gnu: ivar: Update to 1.4.2.
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* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2.
[arguments]: Remove -Werror flag.
2023-04-25 16:17:49 +02:00
f69f346289
gnu: propeller-gcc-4: Use MODIFY-INPUTS.
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* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use
MODIFY-INPUTS and drop package label.
2023-04-25 16:17:49 +02:00
b9162199b3
gnu: propeller-gcc-4: Use G-expression.
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* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression
because the parent GCC package uses them too.
2023-04-25 16:17:49 +02:00
b380fbca88
gnu: trurl: Correct inputs.
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* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by
curl, which is version 7.85.0.
2023-04-25 15:21:05 +02:00
c919bfefd9
Merge remote-tracking branch 'origin/master' into core-updates
2023-04-25 15:19:29 +02:00
472706ae2f
gnu: python-asyncssh: Update to 2.13.1.
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Includes fix for python-cryptography>=39 disallowing SHA-1 signatures,
which caused the testsuite to fail.
* gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
2023-04-25 14:27:14 +02:00
zimoun
Ricardo Wurmus
Florian Pelz
Ludovic Courtès
Efraim Flashner
Andreas Enge
Liliana Marie Prikler
Josselin Poiret
Vivien Kraus
Nicolas Graves
Bruno Victal
Lars-Dominik Braun
Lars-Dominik Braun