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Author SHA1 Message Date
Ricardo Wurmus 0d5bc9382a
gnu: r-quantreg: Update to 5.33. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus f1a313dfde
gnu: r-compquadform: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 50d0b2c158
gnu: r-zoo: Update to 1.8-0. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus c9d200e3af
gnu: r-r-rsp: Update to 0.41.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 96338a91d5
gnu: r-rtsne: Update to 0.13. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 050d41ca87
gnu: r-memoise: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus aa745eb61f
gnu: r-markdown: Update to 0.8. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 958d0ee485
gnu: r-assertthat: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 2219e691bb
gnu: r-rpart: Update to 4.1-11. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus b3360e09a7
gnu: r-mass: Update to 7.3-47. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 4d76947e50
gnu: r-boot: Update to 1.3-19. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 1c8ee3fcc2
gnu: r-stringi: Update to 1.1.5. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.5.
 2017-04-08 10:25:50 +02:00
Ricardo Wurmus c9dccf7917
gnu: r-sourcetools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
 2017-04-06 14:39:23 +02:00
Ricardo Wurmus 0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
 2017-04-06 14:39:22 +02:00
Ricardo Wurmus 20e97759bf
gnu: r-ranger: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus da2260f96c
gnu: r-pbkrtest: Update to 0.4-7. 
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus 4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus a977576780
gnu: r-mclust: Update to 5.2.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 0007e645d9
gnu: r-ggthemes: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 47f37fd169
gnu: r-statmod: Update to 1.4.29. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 4c7ab0309a
gnu: r-vipor: Update to 0.4.5. 
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 2f44ef97a5
gnu: r-mixtools: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus 7a8efc81f8
gnu: r-viridis: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus b5d5344f32
gnu: r-viridislite: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus 82b281fe12
gnu: r-e1071: Update to 1.6-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1d1fbb7336
gnu: r-sparsem: Update to 1.76. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus fb708a1c74
gnu: r-xml: Update to 3.98-1.6. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 0def707ad8
gnu: r-rmarkdown: Update to 1.4. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus ac5e810205
gnu: r-bbmisc: Update to 1.11. 
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus f1870aef99
gnu: r-backports: Update to 1.0.5. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus d05e45f33c
gnu: r-multitaper: Update to 1.0-13. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 0fbae8ebca
gnu: r-xml2: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus c6e40db528
gnu: r-ade4: Update to 1.7-6. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 10ffdb94e4
gnu: r-data-table: Update to 1.10.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 9e8fac0c45
gnu: r-chron: Update to 2.3-50. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus b8acb5aa46
gnu: r-cluster: Update to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus e8988ff9a0
gnu: r-dbi: Update to 0.6-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5e0fa201a2
gnu: r-gdtools: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 7267f358a0
gnu: r-stringr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5beda28f6b
gnu: r-stringi: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 69a8ed6a12
gnu: r-rcpp: Update to 0.12.10. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9948b8e24c
gnu: r-digest: Update to 0.6.12. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 344e4741a1
gnu: r-survival: Update to 2.41-3. 
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9704bda1b3
gnu: r-matrix: Update to 1.2-8. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus 9aea2cdaff
gnu: r-lattice: Update to 0.20-35. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus 7ceb26ee83
gnu: r-rprojroot: Update to 1.2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus d51f05f769
gnu: r-tidyr: Update to 0.6.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1db293757b
gnu: r-roxygen2: Update to 6.0.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus bf6dcf59eb
gnu: Add r-commonmark. 
* gnu/packages/statistics.scm (r-commonmark): New variable.
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1cbb07a8e4
gnu: Add r-desc. 
* gnu/packages/statistics.scm (r-desc): New variable.
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 67deeea41b
gnu: r-readr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
 2017-04-06 14:39:09 +02:00
Ricardo Wurmus 33eb555e6f
gnu: r-tibble: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
 2017-04-06 14:39:09 +02:00
Leo Famulari 7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages. 
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
 2017-04-02 20:00:51 -04:00
Marius Bakke 84157bb8bf
Merge branch 'master' into core-updates 
Most conflicts are from 6fd52309b8.
 2017-03-30 22:59:53 +02:00
Tobias Geerinckx-Rice 6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
 2017-03-30 01:30:16 +02:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Ricardo Wurmus e2c4fe7c62
gnu: Add r-cairo. 
* gnu/packages/statistics.scm (r-cairo): New variable.
 2017-03-20 21:16:11 +01:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ricardo Wurmus 60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems. 
Fixes <https://bugs.gnu.org/25598>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal. 
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus f1fe5283c9
gnu: Add r-with-recommended-packages. 
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages. 
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 4b005c7a75
gnu: Add r-spatial. 
* gnu/packages/statistics.scm (r-spatial): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 567b154fb0
gnu: r-rpart: Move to the set of recommended packages. 
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus a5a343656b
gnu: r-nnet: Move to set of recommended R packages. 
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 248f65269a
gnu: Add r-nlme. 
* gnu/packages/statistics.scm (r-nlme): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 060c12868b
gnu: r-lattice: Move to other recommended R packages. 
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus e88bad6ddb
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 69fddd2d6e
gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c1999c5910
gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus a27bfb8484
gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 7489258751
gnu: Add r-class. 
* gnu/packages/statistics.scm (r-class): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c7e80a7e0d
gnu: Add r-mass. 
* gnu/packages/statistics.scm (r-mass): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 8f0069170c
gnu: Add r-boot. 
* gnu/packages/statistics.scm (r-boot): New variable.
 2017-03-17 10:14:00 +01:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
pjotrp 3288e647e3
gnu: r-hexbin: Update to 1.27.1-1. 
The package tarball was updated in place, resulting in a change in the hash
value.  We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.

* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
 2017-03-13 10:34:00 +01:00
Leo Famulari 3ffaec136f
gnu: Add a tzdata variant for testing purposes. 
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
 2017-03-12 20:45:46 -04:00
Raoul Jean Pierre Bonnal a5935d1946
gnu: Add r-tsne. 
* gnu/packages/bioinformatics.scm (r-tsne): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 02eec38ee1
gnu: Add r-ranger. 
* gnu/packages/statistics.scm (r-ranger): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal d1906e3147
gnu: Add r-tclust. 
* gnu/packages/statistics.scm (r-tclust): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 5a200a24eb
gnu: Add r-sn. 
* gnu/packages/statistics.scm (r-sn): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 06085b5bc5
gnu: Add r-numderiv. 
* gnu/packages/statistics.scm (r-numderiv): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal fe68c8a990
gnu: Add r-mnormt. 
* gnu/packages/statistics.scm (r-mnormt): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 362ea0dc29
gnu: Add r-rcppprogress. 
* gnu/packages/statistics.scm (r-rcppprogress): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa890f6185
gnu: Add r-caret. 
* gnu/packages/statistics.scm (r-caret): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal ab2ec643c3
gnu: Add r-car. 
* gnu/packages/statistics.scm (r-car): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal a3eb8c8191
gnu: Add r-pbkrtest. 
* gnu/packages/statistics.scm (r-pbkrtest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 51fc7d8c31
gnu: Add r-lme4. 
* gnu/packages/statistics.scm (r-lme4): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal c549864d90
gnu: Add r-nloptr. 
* gnu/packages/statistics.scm (r-nloptr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 49dc1fa5cb
gnu: Add r-quantreg. 
* gnu/packages/statistics.scm (r-quantreg): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 545d0789fc
gnu: Add r-matrixmodels. 
* gnu/packages/statistics.scm (r-matrixmodels): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa84100011
gnu: Add r-modelmetrics. 
* gnu/packages/statistics.scm (r-modelmetrics): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 21cfad44c1
gnu: Add r-rcppeigen. 
* gnu/packages/statistics.scm (r-rcppeigen): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 0392f82fd5
gnu: Add r-minqa. 
* gnu/packages/statistics.scm (r-minqa): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:05 +10:00
Raoul Jean Pierre Bonnal e08ad76658
gnu: Add r-fnn. 
* gnu/packages/statistics.scm (r-fnn): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:55:28 +10:00
Raoul Jean Pierre Bonnal 7711f61450
gnu: Add r-pbapply. 
* gnu/packages/statistics.scm (r-pbapply): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:51:50 +10:00
Raoul Jean Pierre Bonnal d4cebae286
gnu: Add r-vgam. 
* gnu/packages/statistics.scm (r-vgam): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:47:02 +10:00
Raoul Jean Pierre Bonnal a409e8b52f
gnu: Add r-fpc. 
* gnu/packages/statistics.scm (r-fpc): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5da4f84f1f
gnu: Add r-trimcluster. 
* gnu/packages/statistics.scm (r-trimcluster): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c0cab38e03
gnu: Add r-robustbase. 
* gnu/packages/statistics.scm (r-robustbase): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal cda0720805
gnu: Add r-deoptimr. 
* gnu/packages/statistics.scm (r-deoptimr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c962816dc4
gnu: Add r-prabclus. 
* gnu/packages/statistics.scm (r-prabclus): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5638e15475
gnu: Add r-mclust. 
* gnu/packages/statistics.scm (r-mclust): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal a1f2668e6c
gnu: Add r-flexmix. 
* gnu/packages/statistics.scm (r-flexmix): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal 1721fb4fe7
gnu: Add r-modeltools. 
* gnu/packages/statistics.scm (r-modeltools): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal d5eca4f9ac
gnu: Add r-diptest. 
* gnu/packages/statistics.scm (r-diptest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Ricardo Wurmus f2ac937924
gnu: r: Remove obsolete configure flags. 
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus f7db12022c
gnu: r: Update to 3.3.3. 
* gnu/packages/statistics.scm (r): Update to 3.3.3.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus beaa026aa7
gnu: r: Fix more reproducibility problems. 
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
 2017-03-08 12:32:49 +01:00
Ricardo Wurmus 745c687be3
gnu: r: Fix syntax for INSTALL_OPTS. 
This is a follow-up to commit 4621acfd82.

* gnu/packages/statistics.scm (r)[arguments]: Ensure that
"--built-timestamp" appears on the same line as the other INSTALL_OPTS.
 2017-03-08 12:32:49 +01:00
Marius Bakke 6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Tobias Geerinckx-Rice 9c53993fb2
gnu: r-gtable: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-gtable): Remove shadowed 0.1.2 version.
[home-page]: Use HTTPS.
[synopsis, description]: Use those of the removed version.
 2017-03-03 00:59:30 +01:00
Tobias Geerinckx-Rice fe08b1a759
gnu: r-codetools: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-codetools): Remove shadowed 0.2-14 version.
[home-page]: Use HTTPS.
 2017-03-03 00:59:30 +01:00
Ricardo Wurmus 4621acfd82
gnu: r: Build default packages reproducibly. 
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
 2017-02-07 20:04:49 +01:00
Raoul Jean Pierre Bonnal c6dced88f2
gnu: Add r-rann. 
* gnu/packages/statistics.scm (r-rann): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:21:22 -05:00
Raoul Jean Pierre Bonnal 37337699d7
gnu: Add r-randomforest. 
* gnu/packages/statistics.scm (r-randomforest): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:12:51 -05:00
Ben Woodcroft e4b6c565be
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2017-01-23 21:23:33 +10:00
Raoul Jean Pierre Bonnal e431eb670d
gnu: Add r-fastica. 
* gnu/packages/statistics.scm (r-fastica): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal 793f2edbbc
gnu: Add r-lars. 
* gnu/packages/statistics.scm (r-lars): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal efba686c80
gnu: Add r-mixtools. 
* gnu/packages/statistics.scm (r-mixtools): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal c6017f7222
gnu: Add r-cowplot. 
* gnu/packages/statistics.scm (r-cowplot): New variable.
 2017-01-20 15:38:02 +01:00
Ricardo Wurmus 26a281ef27
gnu: Add r-compquadform. 
* gnu/packages/statistics.scm (r-compquadform): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus 5f764dd7ff
gnu: Add r-fivethirtyeight. 
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
 2017-01-17 21:46:47 +01:00
Roel Janssen ac1f1e4e02
gnu: Add r-ggthemes. 
* gnu/packages/statistics.scm (r-ggthemes):  New variable.
 2017-01-12 15:14:04 +01:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2. 
* gnu/packages/statistics.scm (r): Update to 3.3.2.
 2016-12-18 10:02:52 +10:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64. 
* gnu/packages/statistics.scm (r-bit64): New variable.
 2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit. 
* gnu/packages/statistics.scm (r-bit): New variable.
 2016-12-14 20:43:28 +10:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr. 
* gnu/packages/statistics.scm (r-rocr): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots. 
* gnu/packages/statistics.scm (r-gplots): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata. 
* gnu/packages/statistics.scm (r-gdata): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build 
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
 2016-11-15 22:31:33 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs). 
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
 2016-11-15 22:31:02 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a) 
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
 2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3) 
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
 2016-11-15 22:28:38 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode". 
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
 2016-11-10 18:49:49 +01:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page. 
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-06 14:35:21 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory. 
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
 2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory. 
* gnu/packages/statistics.scm (r-bigmemory): New variable.
 2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity. 
* gnu/packages/statistics.scm (r-synchronicity): New variable.
 2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri. 
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
 2016-11-04 14:35:04 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival. 
* gnu/packages/statistics.scm (r-survival): New variable.
 2016-11-03 19:01:44 +01:00
Mark H Weaver 3d82676919
Merge branch 'master' into core-updates 2016-10-27 20:21:26 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix 
* gnu/packages/statistics.scm (r): Use uname from Guix.
 2016-10-27 16:37:24 +02:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2016-10-26 09:28:07 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
 2016-10-08 22:29:58 +10:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr. 
* gnu/packages/statistics.scm (r-purrr): New variable.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite. 
* gnu/packages/statistics.scm (r-viridislite): New variable.
 2016-10-02 17:31:36 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal. 
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
 2016-09-28 17:54:50 +03:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs. 
* gnu/packages/statistics.scm (r-batchjobs): New variable.
 2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail. 
* gnu/packages/statistics.scm (r-fail): New variable.
 2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc. 
* gnu/packages/statistics.scm (r-bbmisc): New variable.
 2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate. 
* gnu/packages/statistics.scm (r-checkmate): New variable.
 2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports. 
* gnu/packages/statistics.scm (r-backports): New variable.
 2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr. 
* gnu/packages/statistics.scm (r-sendmailr): New variable.
 2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap. 
* gnu/packages/statistics.scm (r-pheatmap): New variable.
 2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix. 
* gnu/packages/statistics.scm (r-matrix): New variable.
 2016-09-26 03:21:32 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc. 
* gnu/packages/statistics.scm (r-hmisc): New variable.
 2016-09-26 03:21:13 +02:00