eec1724ea6
gnu: Add r-rsq.
...
* gnu/packages/cran.scm (r-rsq): New variable.
2022-06-12 22:51:23 +02:00
622545de6c
Merge branch 'master' into staging
2022-06-12 22:49:47 +02:00
9c036f2dfb
gnu: Add emacs-corfu-doc-terminal.
...
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:24 +02:00
a473d74ff1
gnu: Add emacs-corfu-terminal.
...
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:23 +02:00
e22b55f0b9
gnu: llvm-14: Fix configure-flags for cross-compiling.
...
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in
configure-flags when cross-compiling llvm.
2022-06-12 13:50:47 +03:00
3cbef19a90
gnu: zig: Limit to 64bit systems.
...
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
2022-06-12 13:50:47 +03:00
2a34333d0c
guix: packages: Add %32bit-supported-systems, %64bit-supported-systems.
...
* guix/packages.scm (%32bit-supported-systems,
%64bit-supported-systems): New variables.
(%supported-systems): Rewrite using %32bit-supported-systems,
%64bit-supported-systems.
2022-06-12 13:50:43 +03:00
541823b318
gnu: r-hdf5array: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12 11:16:30 +02:00
a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
2022-06-12 11:16:30 +02:00
a76b657d93
gnu: r-rsubread: Update to 2.10.2.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
2022-06-12 11:16:30 +02:00
41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
2022-06-12 11:16:29 +02:00
640b45d73c
gnu: r-monocle: Update to 2.24.1.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
2022-06-12 11:16:29 +02:00
8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
2022-06-12 11:16:29 +02:00
46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
2022-06-12 11:16:28 +02:00
7a344aa9e2
gnu: r-keggrest: Update to 1.36.2.
...
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
2022-06-12 11:16:28 +02:00
1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
2022-06-12 11:16:28 +02:00
15e26f97d9
gnu: r-biocparallel: Update to 1.30.3.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
2022-06-12 11:16:28 +02:00
f5899fe58b
gnu: r-deepsnv: Update to 1.42.1.
...
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
2022-06-12 11:16:23 +02:00
965d54e344
gnu: java-plexus-component-metadata: Fix package.
...
* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for
newer jdom.
2022-06-12 09:07:17 +02:00
091eb323ba
Merge branch 'master' into staging
2022-06-08 14:53:16 +02:00
0c5299200f
gnu: Add emacs-pyimport.
...
* gnu/packages/emacs-xyz.scm (emacs-pyimport): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:14:41 +02:00
7fbf02b854
gnu: Add emacs-toodoo.
...
* gnu/packages/emacs-xyz.scm (emacs-toodoo): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:09:04 +02:00
1ba8c74de3
gnu: Add emacs-opencl-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-opencl-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:02:53 +02:00
05fef7bfc6
gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6.
...
The previous method of making a union with symlinks would work with 13.4
but not with 13.6, which has an extra 'canonicalize_path' call in
'find_my_exec'.
* gnu/packages/databases.scm (timescaledb)[arguments]: In
'prepare-tests', pass #:symlink argument to 'union-build'.
2022-06-07 23:58:16 +02:00
b422687cbd
gnu: postgresql@10: Fix manual compilation.
...
This is a followup to f0227a18c2
2022-06-05 17:00:18 +02:00
5035be651a
gnu: docbook-sgml: Add 4.2.
...
* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New
variables.
(docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
2022-06-05 17:00:18 +02:00
5b6b4ade7c
gnu: go: Make 'make-go-std' memoizing.
...
* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
2022-06-05 17:00:18 +02:00
fb21085d25
gnu: go-std: Make public.
...
* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New
variables.
2022-06-05 17:00:17 +02:00
75eae3fd78
gnu: emacs-rainbow-mode: Update to 1.0.6.
...
* gnu/packages/emacs-xyz.scm (emacs-rainbow-mode): Update to 1.0.6.
2022-06-05 02:00:01 +02:00
1dc22f19e8
gnu: emacs-undo-tree: Update to 0.8.2.
...
* gnu/packages/emacs-xyz.scm (emacs-undo-tree): Update to 0.8.2.
2022-06-05 02:00:01 +02:00
4fc248ada2
gnu: emacs-ghub: Update to 3.5.6.
...
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.6.
2022-06-05 02:00:01 +02:00
9105c60f0d
gnu: putty: Update to 0.77.
...
* gnu/packages/networking.scm (putty): Update to 0.77.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old 'chdir phase. Add a custom 'check phase.
[native-inputs]: Add perl.
2022-06-05 02:00:00 +02:00
66c5e40762
gnu: emacs-d-mode: Update to 2.0.12.
...
* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.12.
2022-06-05 02:00:00 +02:00
8578b8d8b5
gnu: openmpi: Update to 4.1.4.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
2022-06-05 02:00:00 +02:00
5a42df6e49
gnu: Add emacs-xah-fly-keys.
...
* gnu/packages/emacs-xyz.scm (emacs-xah-fly-keys): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:55:39 +02:00
8e6228d499
gnu: emacs-plz: Update to 0.1.
...
* gnu/packages/emacs-xyz (emacs-plz): Update to 0.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:45:10 +02:00
899c29805f
gnu: emacs-evil-collection: Update to 0.0.8.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.8.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:40:29 +02:00
c53a92ca2d
gnu: emacs-modus-themes: Update to 2.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.4.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:38:27 +02:00
5f4946fac5
gnu: Add emacs-popon.
...
* gnu/packages/emacs-xyz.scm (emacs-popon): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:01:41 +02:00
b42ed3b77c
gnu: Add xwhite.
...
* gnu/packages/xdisorg.scm (xwhite): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:13 +02:00
d78478758e
gnu: Add edlin.
...
* gnu/packages/text-editors.scm (edlin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:13 +02:00
2c8c9403ae
gnu: nyacc: Update to 1.07.0.
...
* gnu/packages/mes.scm (nyacc): Update to 1.07.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:12 +02:00
6764455a4b
.dir-locals: Adjust to bug-reference-mode in Emacs 28.
...
* .dir-locals.el: Adjust 'bug-reference-bug-regexp' and
'bug-reference-url-format' to Emacs 28.
2022-06-07 18:29:12 +02:00
71388e1fda
gnu: guile-fibers: Update to 1.1.1.
...
* gnu/packages/guile-xyz.scm (guile-fibers-1.1): Update to 1.1.1.
2022-06-07 18:29:12 +02:00
413b85ad4f
gnu: Remove unused patch.
...
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-07 19:11:48 +03:00
96d47797dc
gnu: python-debian: Set version to build reproducibly.
...
* gnu/packages/python-xyz.scm (python-debian)[arguments]: Add 'set-version
phase.
2022-06-07 08:42:41 -07:00
ceeb2bfcae
gnu: offlate: Fix build.
...
* gnu/packages/python-xyz.scm (offlate)
[phases]{patch-for-pygit2}: New phase.
2022-06-07 09:11:56 -04:00
e3d2650726
gnu: python-pygit2: Update to 1.9.2 and enable tests.
...
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.9.2.
[tests?]: Delete argument.
[phases]{check}: New phase override.
[description]: Fix sentence.
2022-06-07 09:11:55 -04:00
5125d005ed
gnu: python-pygmsh: Update to 7.1.17.
...
* gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.17.
[source]: Remove snippet and modules fields.
[origin]: Prefix tag by "v".
[phases]: Delete trailing #t.
{workaround-gmsh-detection-failure}: New phase.
{build, install}: New phase overrides.
{check}: Honor tests and remove extraneous add-installed-pythonpath call.
[native-inputs]: Remove wheel. Add python-pypa-build and python-flit-core.
[propagated-inputs]: Remove python-importlib-metadata.
2022-06-07 09:11:55 -04:00
937094b75c
gnu: python-xunitparser: Update to 1.3.4.
...
* gnu/packages/python-check.scm (python-xunitparser): Update to 1.3.4.
2022-06-07 09:11:55 -04:00
Ricardo Wurmus
Ludovic Courtès
jgart
Efraim Flashner
Julien Lepiller
jgart via Guix-patches via
Stefan Reichör
Thomas Albers
Tobias Geerinckx-Rice
Jai Vetrivelan
Aleksandr Vityazev
Rostislav Svoboda
André A. Gomes
derekchuank@outlook.com
Foo Chuan Wei
Felix Lechner
Vagrant Cascadian
Maxim Cournoyer