830eac9c27
gnu: ngless: Update to 1.1.0.
...
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08 23:37:09 +01:00
3f68f76eaf
gnu: Add jack-select.
...
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08 23:13:11 +01:00
46a864e7c1
gnu: taxtastic: Update to 0.8.11.
...
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08 22:50:16 +01:00
d6d0e10b3d
gnu: guile-next: Revert to 3.0.0.
...
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.
* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
2020-03-08 22:15:54 +01:00
3d33ca27b2
gnu: Add perl-config-inifiles.
...
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08 21:50:44 +01:00
d0ca79e53d
gnu: Add perl-attribute-util.
...
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08 21:50:32 +01:00
30acf2f959
gnu: Add font-opendyslexic.
...
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
2020-03-08 22:42:33 +02:00
e5059c95aa
gnu: beep: Remove dependency on GCC 8.
...
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08 21:21:57 +01:00
1d91680c84
gnu: beep: Update to 1.4.9.
...
* gnu/packages/terminals.scm (beep): Update to 1.4.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
f6713b55a1
services: certbot: Add server option.
...
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
9ef37e81d6
system: Export 'operating-system' missing fields.
...
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
1a30351bf3
gnu: guile-next: Update to 3.0.1.
...
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL.
2020-03-08 21:21:57 +01:00
9a2f99f42f
gexp: Default to current target.
...
* guix/gexp.scm (lower-object): Set target argument to 'current by default and
look for the current target system at bind time if needed,
(gexp->file): ditto,
(gexp->script): ditto,
(lower-gexp): make sure lowered extensions are not cross-compiled.
* tests/gexp.scm: Add cross-compilation test-cases for gexp->script and
gexp->file with a target passed explicitely and with a default target.
2020-03-08 20:28:31 +01:00
5d52d10661
store: Add set-current-target procedure.
...
* guix/store.scm (set-current-target): New exported procedure.
2020-03-08 20:28:31 +01:00
c32897b6e4
gnu: r-robust: Update to 0.5-0.0.
...
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08 16:02:04 +01:00
7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08 16:02:04 +01:00
dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
6434f9b634
gnu: Reword and extend descriptions for some KDE packages.
...
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
kontactinterface, kpimtextedit)[description]: Reword and extend.
(ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
(kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
2020-03-08 14:06:00 +01:00
1eb3b2b666
gnu: Add emacs-org-journal.
...
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
2020-03-08 11:19:16 +01:00
e2ca10a46f
gnu: python-umap-learn: Fix build.
...
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
run the test suite.
2020-03-08 10:20:22 +01:00
5fdc5b2d57
services: nfs: Run rpc.mountd in foreground.
...
Fixes <https://bugs.gnu.org/39708 >.
Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.
* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
2020-03-08 00:26:02 -05:00
be3908fa14
gnu: QEMU: Fix CVE-2020-8608.
...
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2020-03-07 16:37:25 -05:00
83ac7cb42b
gnu: brotli: Remove package
...
Same package is provided by google-brotli.
* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
d9476a3700
gnu: woff2: Update to 1.0.2
...
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
74ff08e6b8
gnu: ccache: Fix indentation
...
* gnu/packages/ccache.scm (ccache): Fix indentation
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
9eb456b8c7
gnu: ccache: Update to 3.7.7.
...
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules.
...
Discussed at <https://bugs.gnu.org/39926 >.
* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
2020-03-07 22:30:00 +01:00
8ab060b68b
gnu: guile: Add 2.2.7.
...
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-07 22:29:44 +01:00
2519e4cba8
gnu: emacs-xr: Update to 1.17.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
2020-03-07 21:42:45 +01:00
f61b980f5d
gnu: emacs-relint: Update to 1.15.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
2020-03-07 21:41:06 +01:00
1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:55 +01:00
667f799641
gnu: r-survival: Update to 3.1-11.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
2020-03-07 20:03:43 +01:00
d8545835bd
gnu: r-lifecycle: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:32 +01:00
a97c648c61
gnu: r-covr: Update to 3.5.0.
...
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:21 +01:00
4882fcd292
gnu: r-pscl: Update to 1.5.5.
...
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
2020-03-07 20:03:11 +01:00
15d3ac75ce
gnu: r-mosaic: Add r-knitr.
...
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
2020-03-07 20:02:52 +01:00
c68c7e2fbf
gnu: r-insight: Update to 0.8.2.
...
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
2020-03-07 20:02:35 +01:00
491ce4f083
gnu: r-heatmaply: Add r-knitr.
...
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
2020-03-07 20:02:14 +01:00
d56553edc3
gnu: r-methylkit: Add r-knitr.
...
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
2020-03-07 19:42:34 +01:00
06fc1882f2
gnu: r-ggrepel: Add r-knitr.
...
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
2020-03-07 19:38:31 +01:00
c363722e81
import/cran: Add vignette builder to native inputs.
...
* guix/import/cran.scm (needs-knitr?): New procedure.
(description->package): Use it.
2020-03-07 19:31:47 +01:00
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
2020-03-07 19:31:47 +01:00
bf3722f9db
gnu: r-depecher: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-07 19:31:47 +01:00
a2512e436b
gnu: r-xcms: Update to 3.8.2.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
2020-03-07 19:31:47 +01:00
f0aaa4482a
gnu: r-yamss: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
2020-03-07 19:31:47 +01:00
56bf00b94e
gnu: r-viridis: Add r-knitr.
...
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
2020-03-07 19:31:46 +01:00
3b7c644569
gnu: r-vsn: Add r-knitr.
...
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
2020-03-07 19:31:46 +01:00
9eed0a74f9
fd: Install bash completion properly.
...
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
the dash in "bash-completion.d" with an underscore.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-07 18:32:27 +01:00
880a316591
gnu: anki: Fix mpv audio playback
...
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
PATH to include mpv executable.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-07 17:29:34 +01:00
262d6ed465
gnu: next: Fix build with SBCL 2.0.2.
...
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
on SBCL 2.0.2.
2020-03-07 17:12:35 +01:00
Ricardo Wurmus
Ludovic Courtès
Roel Janssen
Efraim Flashner
Vincent Legoll
Jack Hill
Brice Waegeneire
Mathieu Othacehe
Hartmut Goebel
Martin Becze
Maxim Cournoyer
Leo Famulari
Lars-Dominik Braun
Nicolas Goaziou
Michael Rohleder
Robert Smith
Pierre Neidhardt