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56347 Commits (85a7466e22d345444f952b57346f4c09de020c1f)

Author SHA1 Message Date
Maxim Cournoyer 85a7466e22
build: file-systems: Do not warn about file system check for NFS.
* gnu/build/file-systems.scm (check-file-system): Define a dummy checker
procedure for NFS that always passes to prevent a warning from being emitted.
2020-03-02 23:59:45 -05:00
Maxim Cournoyer 99e676db43
file-systems: Add a 'file-system-device->string' procedure.
* gnu/system/file-systems.scm (file-system-device->string): New procedure.
* gnu/system.scm (bootable-kernel-arguments): Use it.
* gnu/system/vm.scm (operating-system-uuid): Likewise.
* guix/scripts/system.scm (display-system-generation): Likewise.
2020-03-02 23:24:47 -05:00
Maxim Cournoyer cc9b889e8f
linux-boot: Ensure volatile root is mounted read-only.
* gnu/build/linux-boot.scm (mount-root-file-system): Ensure MS_RDONLY is
present among the root file system flags when VOLATILE-ROOT? is #t.
2020-03-02 23:24:47 -05:00
Tobias Geerinckx-Rice 754c12041d
gnu: mu: Use HTTPS home page.
* gnu/packages/mail.scm (mu)[home-page]: Use HTTPS.
2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice 9f733172cb
gnu: yadifa: Use HTTPS home page.
* gnu/packages/dns.scm (yadifa)[home-page]: Use HTTPS.
2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice 1084e86b59
gnu: python2-py2neo: Use HTTPS home page.
* gnu/packages/databases.scm (python2-py2neo)[home-page]: Use HTTPS.
2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice a0fdade220
gnu: python-contextlib2: Use HTTPS home page.
* gnu/packages/python-xyz.scm (python-contextlib2)[home-page]: Use HTTPS.
2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice 02510c6c9a
gnu: python-flask-principal: Update home page.
* gnu/packages/python-web.scm (python-flask-principal)[home-page]:
Follow (HTTPS) redirection.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice fd3ae040cf
gnu: python-gipc: Use HTTPS home page.
* gnu/packages/python-xyz.scm (python-gipc)[home-page]: Use HTTPS.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice d3d73bd650
gnu: python-seaborn: Update & use HTTPS home page.
* gnu/packages/python-xyz.scm (python-seaborn)[home-page]: Follow
redirection, but use HTTPS.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 5d6e7106e1
gnu: python-vobject: Use HTTPS home page.
* gnu/packages/python-xyz.scm (python-vobject)[home-page]: Use HTTPS.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 26827dfe36
gnu: python-activepapers: Use HTTPS home page.
* gnu/packages/python-xyz.scm (python-activepapers)[home-page]:
Use HTTPS.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice f894ffd867
gnu: tome4: Update to 1.6.7.
* gnu/packages/games.scm (tome4): Update to 1.6.7.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice bcea20cc90
gnu: shotwell: Update to 0.30.8.
* gnu/packages/gnome.scm (shotwell): Update to 0.30.8.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 5decb16015
gnu: gmime: Update to 3.2.6.
* gnu/packages/mail.scm (gmime): Update to 3.2.6.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 363fe78af1
gnu: liblo: Update to 0.31.
* gnu/packages/audio.scm (liblo): Update to 0.31.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 46b39ce835
gnu: fish: Don't use NAME in source URI.
* gnu/packages/shells.scm (fish)[source]: Hard-code NAME.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 848be51c88
gnu: gptfdisk: Update to 1.0.5.
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.5.
[source]: Hard-code NAME.
[arguments]: Add ‘fix-include-directory’ phase.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 0e08ca1454
gnu: amtk: Update to 5.0.2.
* gnu/packages/gnome.scm (amtk): Update to 5.0.2.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice e82cf6c687
gnu: notmuch: Extend test time-out.
* gnu/packages/mail.scm (notmuch)[arguments]:
Add NOTMUCH_TEST_TIMEOUT=1h make flag.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 5815531202
gnu: oil-shell: Update to 0.7.0.
* gnu/packages/shells.scm (oil-shell): Update to 0.7.0.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice efebdf3a66
gnu: serd: Update to 0.30.2.
* gnu/packages/rdf.scm (serd): Update to 0.30.2.
2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 78fca23163
gnu: python-pyudev: Update to 0.22.0.
* gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.
2020-03-03 05:05:47 +01:00
Leo Famulari 6ce0865500
gnu: Go: Update to 1.13.8.
* gnu/packages/golang.scm (go-1.13): Update to 1.13.8.
2020-03-02 19:30:26 -05:00
Marius Bakke 15a6805751
gnu: Add system test for CUPS.
* gnu/tests/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2020-03-02 23:39:44 +01:00
Marius Bakke 1f8838d1f6
gnu: libgc: Fix replacement inheritance.
* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.
2020-03-02 23:39:44 +01:00
Ricardo Wurmus 1e07875b57
gnu: Add r-zseq.
* gnu/packages/cran.scm (r-zseq): New variable.
2020-03-02 23:05:49 +01:00
Ricardo Wurmus 02366a12d0
gnu: Add r-ztype.
* gnu/packages/cran.scm (r-ztype): New variable.
2020-03-02 23:05:49 +01:00
Ricardo Wurmus 11ab52888d
gnu: Add r-zvcv.
* gnu/packages/cran.scm (r-zvcv): New variable.
2020-03-02 23:05:49 +01:00
Ricardo Wurmus 505d6716d0
gnu: Add r-zyp.
* gnu/packages/cran.scm (r-zyp): New variable.
2020-03-02 23:05:49 +01:00
Ricardo Wurmus 7316f137dc
gnu: Add r-kendall.
* gnu/packages/cran.scm (r-kendall): New variable.
2020-03-02 23:05:49 +01:00
Maxim Cournoyer 1639e0b7b6
gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2.
* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.
2020-03-02 17:03:03 -05:00
Maxim Cournoyer 166dbbb012
gnu: python-gitpython: Update to 3.1.0.
* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
2020-03-02 17:03:03 -05:00
Maxim Cournoyer cbe4272e6f
gnu: python-gitdb: Update to 4.0.2.
* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror.  This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.
2020-03-02 17:03:03 -05:00
Maxim Cournoyer 357af7f283
gnu: python-pyyaml: Update to 5.3.
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
2020-03-02 17:03:02 -05:00
Maxim Cournoyer 8c06d6d8ce
gnu: python-xenon: Update to 0.7.0.
* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.
2020-03-02 17:03:02 -05:00
Maxim Cournoyer f675ab4faf
gnu: python-radon: Update to 4.1.0.
* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
2020-03-02 17:03:02 -05:00
Maxim Cournoyer bd13705540
gnu: python-colorama: Update to 0.4.3.
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
2020-03-02 17:03:02 -05:00
Maxim Cournoyer 9c9704a9d7
gnu: Add python-wget.
* gnu/packages/python-xyz.scm (python-wget): New variable.
2020-03-02 17:03:02 -05:00
Nicolas Goaziou 1eee899617
gnu: emacs-windower: Fix description.
* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.
2020-03-02 22:59:57 +01:00
Ricardo Wurmus 7a4b2da48f
gnu: r-forcats: Update to 0.5.0.
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
2020-03-02 21:53:49 +01:00
Ricardo Wurmus 3f809fe875
gnu: r-testthat: Update to 2.3.2.
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
2020-03-02 21:53:48 +01:00
Ricardo Wurmus d82a17ebaa
gnu: r-openmx: Update to 2.17.3.
* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
2020-03-02 21:53:48 +01:00
Ricardo Wurmus 2d063d4535
gnu: r-summarytools: Update to 0.9.6.
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
2020-03-02 21:53:48 +01:00
Ricardo Wurmus bbba65e269
gnu: r-officer: Update to 0.3.7.
* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
2020-03-02 21:53:48 +01:00
Ricardo Wurmus 1284df4ef6
gnu: r-seqminer: Update to 8.0.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
2020-03-02 21:53:48 +01:00
Tobias Geerinckx-Rice b4034d1bc4
gnu: ecl-clunit: Use HTTPS home page.
* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 711ebe771e
gnu: mapnik: Use HTTPS home page.
* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 4e5ad79e4d
gnu: python-rq: Use HTTPS home page.
* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 35e74723b5
gnu: java-plexus-interpolation: Use HTTPS home page.
* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00