8921841da8
gnu: r-s4vectors: Update to 0.8.11.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11.
2016-03-01 19:47:25 +02:00
b70fa3c7f7
gnu: r-ggplot2: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0.
2016-03-01 19:47:24 +02:00
caeadfddb0
gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}].
...
See <http://openssl.org/news/secadv/20160301.txt >.
Also fixes <http://bugs.gnu.org/22831 >.
* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
2016-03-01 16:00:46 +01:00
c22a1324e6
grafts: Graft recursively.
...
Fixes <http://bugs.gnu.org/22139 >.
* guix/grafts.scm (graft-derivation): Rename to...
(graft-derivation/shallow): ... this.
(graft-origin-file-name, item->deriver, non-self-references)
(cumulative-grafts, graft-derivation): New procedures
* tests/grafts.scm ("graft-derivation, grafted item is a direct
dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer
to the grafted derivation.
("graft-derivation, grafted item is an indirect dependency")
("graft-derivation, no dependencies on grafted output"): New tests.
* guix/packages.scm (input-graft): Change to take a package instead of
an input.
(input-cross-graft): Likewise.
(fold-bag-dependencies): New procedure.
(bag-grafts): Rewrite in terms of 'fold-bag-dependencies'.
* tests/packages.scm ("package-derivation, indirect grafts"): Comment out.
* doc/guix.texi (Security Updates): Mention run-time dependencies and
recursive grafting.
2016-03-01 16:00:46 +01:00
d06fc008bd
gnu: tiled: Use 'modify-phases'.
...
* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'.
2016-03-01 14:55:55 +02:00
e8ea01d902
gnu: tiled: Update to 0.15.1.
...
* gnu/packages/game-development.scm (tiled): Update to 0.15.1.
2016-03-01 14:55:55 +02:00
d1e32822b4
gnu: Add PePr.
...
* gnu/packages/bioinformatics.scm (pepr): New variable.
2016-03-01 11:51:24 +01:00
d29150b55d
gnu: Add bwa-pssm.
...
* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
2016-03-01 10:31:04 +01:00
b4464d384c
gnu: Add gdsl.
...
* gnu/packages/datastructures.scm (gdsl): New variable.
2016-03-01 10:30:04 +01:00
e288f0075c
gnu: weechat: Move to irc.scm.
...
* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
2016-03-01 11:09:32 +02:00
a61bd6a5e3
gnu: irssi: Use 'modify-phases'.
...
* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
2016-03-01 11:09:32 +02:00
27930f853d
gnu: irssi: Move to irc.scm.
...
* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
2016-03-01 11:09:32 +02:00
980f058d92
gnu: Add quassel.
...
* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
2016-03-01 11:09:32 +02:00
550791b8f1
gnu: Add snorenotify.
...
* gnu/packages/kde.scm (snorenotify): New variable.
2016-03-01 11:09:32 +02:00
d34c594aeb
gnu: Add qca.
...
* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
2016-03-01 11:09:32 +02:00
d8ea278204
gnu: Add oxygen-icons.
...
* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
2016-03-01 11:09:32 +02:00
fea1f275bc
gnu: Add desmume.
...
* gnu/packages/games.scm (desmume): New variable.
2016-02-29 22:04:53 -05:00
8d5ceb120d
gnu: curl: Use updated libssh2 [fixes CVE-2016-7087].
...
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
2016-02-29 20:09:29 -05:00
aa5946edb2
gnu: Remove python2-pil.
...
python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533). Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.
* gnu/packages/python.scm (python2-pil): Remove variable.
2016-02-29 15:01:20 -08:00
daeb61f7a9
gnu: guile-for-guile-emacs: Use guile-2.0 search paths.
...
* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
Use the same search paths as guile-2.0.
2016-02-29 07:10:40 +01:00
823e2ed4b3
gnu: msmtp: Install msmtpq.
...
* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
2016-02-28 22:06:24 -05:00
1a59b6d014
gnu: git: Install symlinks instead of hard links.
...
This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949 >.
* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
2016-02-28 16:41:53 +01:00
dbb7a08175
gnu: libwnck: Rename variable for GTK+ 2 variant.
...
* gnu/packages/gnome.scm (libwnck-1): Rename this...
(libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
xfwm4, xfdesktop)[inputs]: Adapt.
2016-02-28 15:59:56 +01:00
2236da6e97
gnu: xrandr: Update to 1.5.0.
...
* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
2016-02-28 14:13:30 +02:00
97a0859593
gnu: libqmi: Update to 1.12.8.
...
* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
2016-02-28 13:42:34 +02:00
9012e118ff
gnu: wayland: Update to 1.10.0.
...
* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
2016-02-28 13:32:52 +02:00
d3e3d7f02a
gnu: libinput: Update to 1.2.0.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
2016-02-28 13:08:08 +02:00
a724924beb
gnu: python-tornado: Update to 4.3.
...
* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
2016-02-28 10:53:42 +02:00
6b59fc1020
gnu: Add python-backports-abc.
...
* gnu/packages/python.scm (python-backports-abc): New variable.
2016-02-28 10:53:35 +02:00
9579118922
gnu: bitlbee: Update to 3.4.1.
...
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
2016-02-27 21:10:56 -05:00
f376dc3acb
grafts: Consider all the outputs in the graft mapping.
...
Before that, outputs of a derivation could be left referring to the
ungrafted version of the derivation.
* guix/grafts.scm (graft-derivation)[outputs]: Change to a list of
name/file pairs.
* guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable
and use it when computing 'mapping'. Use 'mapping' directly.
* tests/grafts.scm ("graft-derivation, multiple outputs"): New test.
2016-02-27 23:31:52 +01:00
cd05d38812
grafts: Slight simplification.
...
* guix/grafts.scm (graft-derivation)[output-names]: Use
'derivation-output-names'.
2016-02-27 23:31:52 +01:00
82f5186650
grafts: Make sure files are not created world-writable.
...
* guix/build/graft.scm (rewrite-directory): Add 'umask' call.
2016-02-27 23:31:52 +01:00
9c7f7e2da9
gnu: btrfs-progs: Update to 4.4.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-02-27 22:39:51 +02:00
a003b5b650
gnu: scribus: Update to 1.5.1.
...
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-02-27 16:34:20 +01:00
b951e26fe5
gnu: arandr: Add "xrandr" to inputs.
...
* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr".
[arguments]: Add build phase "make-xrandr-available" to ensure "xrandr"
executable is found at runtime.
2016-02-27 16:25:26 +01:00
b35461748b
gnu: Fix misplaced commas (unquote).
...
Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.
* gnu/packages/base.scm (patch, gnu-make),
gnu/packages/bioinformatics.scm (hmmer),
gnu/packages/bittorrent.scm (aria2),
gnu/packages/compression.scm (pbzip2),
gnu/packages/databases.scm (recutils),
gnu/packages/fonts.scm (font-terminus),
gnu/packages/freedesktop.scm (xdg-utils, elogind),
gnu/packages/games.scm (gnujump),
gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
gnu/packages/gnunet.scm (gnunet),
gnu/packages/gnuzilla.scm (mozjs, nspr),
gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
gnu/packages/lua.scm (lua),
gnu/packages/openstack.scm (python-swiftclient),
gnu/packages/perl.scm (perl-json-any),
gnu/packages/polkit.scm (polkit-qt),
gnu/packages/python.scm (wrap-python3, python-oauthlib)
(python-mccabe-0.2.1, python-contextlib2, python2-rauth),
gnu/packages/qt.scm (qtkeychain),
gnu/packages/ruby.scm (ruby-nokogiri),
gnu/packages/screen.scm (screen),
gnu/packages/ssh.scm (libssh),
gnu/packages/video.scm (ffmpeg, mplayer),
gnu/packages/vim.scm (vim),
gnu/packages/xdisorg.scm (redshift),
gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
gnu/packages/xnee.scm (xnee),
gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
2016-02-27 08:49:26 -05:00
48766ea85f
gnu: Add emacs-god-mode.
...
* gnu/packages/emacs.scm (emacs-god-mode): New variable.
2016-02-27 13:50:18 +01:00
048bfba163
gnu: Add gtklick.
...
* gnu/packages/music.scm (gtklick): New variable.
2016-02-27 12:27:21 +01:00
6ab4712d6e
gnu: python2-pygtk: Add libglade to inputs.
...
* gnu/packages/gtk.scm (python2-pygtk)[inputs]: Add "libglade".
2016-02-27 12:27:21 +01:00
a91d72e23a
gnu: Add pyliblo.
...
* gnu/packages/audio.scm (python-pyliblo, python2-pyliblo): New
variables.
2016-02-27 12:27:21 +01:00
b460a99890
gnu: linux-libre-4.1: Update to 4.1.18.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.18.
2016-02-27 02:36:16 -05:00
3dad786b64
gnu: linux-libre: Update to 4.4.3.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.4.3.
2016-02-27 02:36:10 -05:00
917a2a58ec
import: Add github-updater.
...
* guix/import/github.scm: New file.
* guix/scripts/refresh.scm (%updaters): Add %GITHUB-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention it.
* Makefile.am (MODULES): Add gnu/import/github.scm.
2016-02-26 22:06:34 -05:00
22572d56cb
store: 'path-info-deriver' is #f when there is no deriver.
...
* guix/store.scm (read-path-info): Use #f when we get the empty string
for DERIVER.
* guix/scripts/publish.scm (narinfo-string): Adjust accordingly.
* tests/store.scm ("path-info-deriver"): New test.
2016-02-26 23:35:29 +01:00
acb01e3746
grafts: Add record type printer.
...
* guix/grafts.scm (write-graft): New procedure. Register it as a
printer for <graft>.
2016-02-26 23:35:29 +01:00
70ac09a552
doc: Capitalize section title.
...
* doc/guix.texi (Running GuixSD in a VM): Capitalize section title.
2016-02-26 23:35:29 +01:00
4ed737b2ab
gnu: gtk-doc: Improve fix-docbook phase.
...
* gnu/packages/gtk.scm (gtk-doc)[arguments]: In the 'fix-docbook' phase,
avoid hard-coding the docbook-xsl version number, and return #t.
2016-02-25 22:24:32 -05:00
b31fbea566
gnu: Add python-psycopg2.
...
* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
2016-02-25 14:35:28 -08:00
7dd21101a3
gnu: diffoscope: Update to 49.
...
* gnu/packages/package-management.scm (diffoscope): Update to 49.
[source]: Use pypi-uri.
[arguments]: Use python-3. Enable tests. Add 'dependency-on-python-magic' phase
and remove 'dependency-on-rpm' phase.
[native-inputs]: Remove python2-setuptools.
[inputs]: Replace python2-file, python2-debian, python2-libarchive-c,
python2-tlsh, python2-pytest, python2-chardet with python-3 variants.
2016-02-25 17:06:25 -05:00
Pjotr Prins
Ludovic Courtès
Efraim Flashner
Ricardo Wurmus
Manolis Ragkousis
Mark H Weaver
Christopher Allan Webber
Ricardo Wurmus
Leo Famulari
Andreas Enge
Tobias Geerinckx-Rice
Ben Woodcroft
Danny Milosavljevic