8d62db6b54
gnu: python-pymysql: Update to 1.0.2.
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* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
2023-05-09 19:43:43 +02:00
b09e87be26
gnu: python-sqlalchemy: Use pyproject-build-system.
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* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom
'check phase with #:test-flags.
[build-system]: Use pyproject-build-system.
2023-05-09 19:43:43 +02:00
98e943435f
gnu: python-sqlalchemy: Update to 1.4.42.
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* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
2023-05-09 19:20:18 +02:00
851199ef57
gnu: python-starlette: Update to 0.25.0.
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* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
2023-05-09 19:20:18 +02:00
a759cbffaf
services: guix-build-coordinator: Support extra environment vars.
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I'm looking at this because I need to do some debugging of Guile's GC, and
there are some useful environment variables for that, but it should be
generally useful.
* gnu/services/guix.scm (guix-build-coordinator-configuration-extra-environment-variables):
New procedure.
(guix-build-coordinator-shepherd-services): Pass the environment variables to
the shepherd.
* doc/guix.texi (Guix Services): Document it.
2023-05-09 16:19:21 +01:00
c1ffe2f21b
service: qemu-binfmt: Remove broken qemu targets.
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* gnu/services.virtualization.scm (%qemu-platforms): Remove %i486,
%aarch64be.
2023-05-09 17:27:49 +03:00
3f00f46ada
Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture."
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This reverts commit c56d57110d
2023-05-09 16:54:29 +03:00
7e421c1f5a
gnu: r-scran: Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
2023-05-09 15:24:15 +02:00
0880f325b7
gnu: r-scuttle: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
2023-05-09 15:24:15 +02:00
8c7ddd3a44
gnu: r-chromvar: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
2023-05-09 15:24:15 +02:00
d850b72346
gnu: r-hdf5array: Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
2023-05-09 15:24:15 +02:00
3bdd6fb256
gnu: r-s4vectors: Update to 0.38.1.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
2023-05-09 15:24:15 +02:00
da8638facb
gnu: r-preprocesscore: Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
2023-05-09 15:24:15 +02:00
6b2a0aab19
gnu: r-iclusterplus: Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
2023-05-09 15:24:15 +02:00
c96ebf4cf9
gnu: r-clusterprofiler: Update to 4.8.1.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
2023-05-09 15:24:15 +02:00
f7642f34d0
gnu: r-dose: Update to 3.26.1.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
2023-05-09 15:24:15 +02:00
4228100215
gnu: r-linnorm: Update to 2.24.1.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
2023-05-09 15:24:15 +02:00
c6c69d4cc6
gnu: r-dnacopy: Update to 1.74.1.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
2023-05-09 15:24:15 +02:00
c846a694a7
gnu: r-scaledmatrix: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
2023-05-09 15:24:15 +02:00
95d5a918a2
gnu: r-glmgampoi: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
2023-05-09 15:24:15 +02:00
75869a8a94
gnu: r-oligo: Update to 1.64.1.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
2023-05-09 15:24:15 +02:00
a4b04c06ab
gnu: r-summarizedexperiment: Update to 1.30.1.
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* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
2023-05-09 15:24:15 +02:00
c70787f552
gnu: r-scmap: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
2023-05-09 15:24:15 +02:00
0fd93c81be
gnu: r-rhdf5filters: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
2023-05-09 15:24:15 +02:00
4b7a06b839
gnu: r-pcaexplorer: Update to 2.26.1.
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* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
2023-05-09 15:24:15 +02:00
37f44c278f
gnu: r-impute: Update to 1.74.1.
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* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
2023-05-09 15:24:14 +02:00
ef3ce37eeb
gnu: r-genefilter: Update to 1.82.1.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
2023-05-09 15:24:14 +02:00
56524dc465
gnu: r-edger: Update to 3.42.2.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
2023-05-09 15:24:14 +02:00
d9d920403a
gnu: r-deseq2: Update to 1.40.1.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
2023-05-09 15:24:14 +02:00
7a9e68f103
gnu: r-biocparallel: Update to 1.34.1.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
2023-05-09 15:24:14 +02:00
69e954bb0a
gnu: r-annotationdbi: Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
2023-05-09 15:24:14 +02:00
931ac0735f
gnu: r-densvis: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
2023-05-09 15:24:14 +02:00
06b903963c
gnu: r-delayedarray: Update to 0.26.2.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
2023-05-09 15:24:14 +02:00
01faf51999
gnu: r-bandits: Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
2023-05-09 15:24:14 +02:00
13dde61328
gnu: r-bambu: Update to 3.2.2.
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* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
2023-05-09 15:24:14 +02:00
6401f048cf
gnu: r-amplican: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
2023-05-09 15:24:14 +02:00
0861bca905
gnu: r-affyplm: Update to 1.76.1.
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* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
2023-05-09 15:24:14 +02:00
7a58dc01d3
gnu: Add r-s4arrays.
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* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
2023-05-09 15:24:14 +02:00
e2c47544a5
gnu: r-deoptimr: Update to 1.0-13.
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* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-13.
2023-05-09 15:24:14 +02:00
4141309fcd
gnu: r-gdata: Update to 2.19.0.
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* gnu/packages/statistics.scm (r-gdata): Update to 2.19.0.
2023-05-09 15:24:14 +02:00
9c2d020eee
gnu: r-hmisc: Update to 5.1-0.
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* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-0.
2023-05-09 15:24:14 +02:00
0aa29c87b6
gnu: r-viridislite: Update to 0.4.2.
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* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.2.
2023-05-09 15:24:14 +02:00
053685b5de
gnu: r-viridis: Update to 0.6.3.
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* gnu/packages/statistics.scm (r-viridis): Update to 0.6.3.
2023-05-09 15:24:14 +02:00
9a3a4cc88b
gnu: r-pkgmaker: Update to 0.32.10.
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* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.10.
2023-05-09 15:24:14 +02:00
89b4d2de5b
gnu: r-httr: Update to 1.4.6.
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* gnu/packages/statistics.scm (r-httr): Update to 1.4.6.
2023-05-09 15:24:14 +02:00
7362200a9e
gnu: r-chron: Update to 2.3-61.
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* gnu/packages/statistics.scm (r-chron): Update to 2.3-61.
2023-05-09 15:24:14 +02:00
2872088e42
gnu: r-testthat: Update to 3.1.8.
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* gnu/packages/statistics.scm (r-testthat): Update to 3.1.8.
2023-05-09 15:24:14 +02:00
ba8f4abace
gnu: r-evaluate: Update to 0.21.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.21.
2023-05-09 15:24:14 +02:00
87fa92288c
gnu: r-nnet: Update to 7.3-19.
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* gnu/packages/statistics.scm (r-nnet): Update to 7.3-19.
2023-05-09 15:24:14 +02:00
291b84b8c6
gnu: r-kernsmooth: Update to 2.23-21.
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* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-21.
2023-05-09 15:24:14 +02:00
Liliana Marie Prikler
Ricardo Wurmus
Christopher Baines
Efraim Flashner