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Author SHA1 Message Date
Guillaume Le Vaillant a2ed9816c9
gnu: cl-hdf5-cffi: Fix build.
* gnu/packages/lisp-xyz.scm (sbcl-hdf5-cffi)[inputs]: Remove labels.
  [arguments]: Use gexp, add 'fix-newer-hdf5-compatibility' phase.
2023-04-17 11:16:58 +02:00
Navid Afkhami b95cd3f969
gnu: Add r-demuxmix.
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17 11:16:30 +02:00
Navid Afkhami 2b2068a083
gnu: Add r-demultiplex2.
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17 11:14:30 +02:00
Ricardo Wurmus 83fb491e44
gnu: r-simr: Update to 1.0.7.
* gnu/packages/statistics.scm (r-simr): Update to 1.0.7.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus eee0b6075a
gnu: r-quantreg: Update to 5.95.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.95.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 8159838e81
gnu: r-deoptimr: Update to 1.0-12.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-12.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 303acb3a0b
gnu: r-segmented: Update to 1.6-4.
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-4.
2023-04-17 11:11:17 +02:00
Ricardo Wurmus 7e80f058ca
gnu: r-git2r: Update to 0.32.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.32.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 5507db7ee0
gnu: r-markdown: Update to 1.6.
* gnu/packages/statistics.scm (r-markdown): Update to 1.6.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus ca6f22f63b
gnu: r-stars: Update to 0.6-1.
* gnu/packages/cran.scm (r-stars): Update to 0.6-1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 68355cf37b
gnu: r-seqminer: Update to 8.9.
* gnu/packages/cran.scm (r-seqminer): Update to 8.9.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 853fd0f2c3
gnu: r-parsnip: Update to 1.1.0.
* gnu/packages/cran.scm (r-parsnip): Update to 1.1.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 648f92a434
gnu: r-workflowsets: Update to 1.0.1.
* gnu/packages/cran.scm (r-workflowsets): Update to 1.0.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d2d6ea993e
gnu: r-tune: Update to 1.1.1.
* gnu/packages/cran.scm (r-tune): Update to 1.1.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d495c46698
gnu: r-igraph: Update to 1.4.2.
* gnu/packages/cran.scm (r-igraph): Update to 1.4.2.
[propagated-inputs]: Add r-cpp11.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 075a045b41
gnu: r-confintr: Update to 1.0.0.
* gnu/packages/cran.scm (r-confintr): Update to 1.0.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 679c78ed51
gnu: r-spatstat-linnet: Update to 3.1-0.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 3113ee8bba
gnu: r-rstanarm: Update to 2.21.4.
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d8e3aa95a0
gnu: r-quanteda: Update to 3.3.0.
* gnu/packages/cran.scm (r-quanteda): Update to 3.3.0.
[propagated-inputs]: Add r-jsonlite.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 374639c34a
gnu: r-qqconf: Update to 1.3.2.
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.2.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 6655a2af0f
gnu: r-terra: Update to 1.7-23.
* gnu/packages/cran.scm (r-terra): Update to 1.7-23.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b039d0a7c4
gnu: r-enrichr: Update to 3.2.
* gnu/packages/cran.scm (r-enrichr): Update to 3.2.
[propagated-inputs]: Add r-writexls.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 776154da00
gnu: r-scs: Update to 3.2.4.
* gnu/packages/cran.scm (r-scs): Update to 3.2.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 185bb03286
gnu: r-rms: Update to 6.6-0.
* gnu/packages/cran.scm (r-rms): Update to 6.6-0.
[propagated-inputs]: Remove r-lattice; add r-kableextra and r-knitr.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b9d6b88a33
gnu: r-compositions: Update to 2.0-6.
* gnu/packages/cran.scm (r-compositions): Update to 2.0-6.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 39d2ed401f
gnu: r-gargle: Update to 1.4.0.
* gnu/packages/cran.scm (r-gargle): Update to 1.4.0.
[propagated-inputs]: Remove r-rstudioapi.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 51ae3aabee
gnu: r-performance: Update to 0.10.3.
* gnu/packages/cran.scm (r-performance): Update to 0.10.3.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 726b352cec
gnu: r-bayestestr: Update to 0.13.1.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.13.1.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 2a1de6dc13
gnu: r-multcompview: Update to 0.1-9.
* gnu/packages/cran.scm (r-multcompview): Update to 0.1-9.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 367ea059e9
gnu: r-ggformula: Update to 0.10.4.
* gnu/packages/cran.scm (r-ggformula): Update to 0.10.4.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus b0d707eda6
gnu: r-labelled: Update to 2.11.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.11.0.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus f31eb37d5b
gnu: r-renv: Update to 0.17.3.
* gnu/packages/cran.scm (r-renv): Update to 0.17.3.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus d9cef2c152
gnu: r-quantmod: Update to 0.4.22.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.22.
[propagated-inputs]: Add r-jsonlite.
2023-04-17 11:11:16 +02:00
Ricardo Wurmus 1127830d3a
gnu: r-jomo: Update to 2.7-6.
* gnu/packages/cran.scm (r-jomo): Update to 2.7-6.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 5df24ec454
gnu: r-partykit: Update to 1.2-20.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-20.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 832d7a8908
gnu: r-zoo: Update to 1.8-12.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-12.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus aa24b1c17c
gnu: r-v8: Update to 4.3.0.
* gnu/packages/cran.scm (r-v8): Update to 4.3.0.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 0ef30039bb
gnu: r-torch: Update to 0.10.0.
* gnu/packages/cran.scm (r-torch): Update to 0.10.0.
[propagated-inputs]: Add r-desc.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 7b3c9cbb52
gnu: python-pytorch-for-r-torch: Update to 1.13.1.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to
1.13.1.
[source]: Adjust RUNPATH in snippet.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 93825a326c
gnu: liblantern: Update to 0.10.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.10.0.
[arguments]: Adjust build phase.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus ea6d2582c8
gnu: cpuinfo: Update to 0.0-2.53298db.
* gnu/packages/parallel.scm (cpuinfo): Update to 0.0-2.53298db.
[arguments]: Disable one test.
2023-04-17 11:11:15 +02:00
Ricardo Wurmus 96f3c7504a
gnu: Add r-writexls.
* gnu/packages/cran.scm (r-writexls): New variable.
2023-04-17 11:11:15 +02:00
Efraim Flashner b2bc0ecb29
gnu: python-outcome: Update to 1.2.0.
* gnu/packages/python-xyz.scm (python-outcome): Update to 1.2.0.
[propagated-inputs]: Remove python-async-generator.
2023-04-17 11:15:58 +03:00
Efraim Flashner bd0b398b67
gnu: python-jeepney: Update to 0.8.0.
* gnu/packages/python-crypto.scm (python-jeepney): Update to 0.8.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-async-timeout, python-pytest-asyncio,
python-flit-core. Remove python-tornado.
2023-04-17 11:13:26 +03:00
Efraim Flashner 929995a542
gnu: python-secretstorage: Update to 3.3.3.
* gnu/packages/python-crypto.scm (python-secretstorage): Update to 3.3.3.
2023-04-17 11:12:45 +03:00
Andreas Enge 424ee72ffb
gnu: wget: Update to 1.21.3.24.
This update to a non-release version fixes a build failure on i686-linux.

* gnu/packages/wget.scm (wget): Update to 1.21.3.24.
[origin]: Use a self-hosted tarball created from the latest git commit.
2023-04-16 20:52:40 +02:00
Brian Cully e438a3b3dd
gnu: sphinx: Update minimum docutils version to 0.19.
* gnu/packages/sphinx.scm (python-sphinx-rtd-theme)[allow-newer-docutil]: New
phase.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2023-04-16 17:21:38 +02:00
Julien Lepiller 55b4613e39
gnu: python-m2r: Update to 0.3.1.
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.3.1.
2023-04-16 16:23:49 +02:00
Nicolas Goaziou 9a5e1dc1f1
gnu: nerd-dictation: Fix license.
* gnu/packages/machine-learning.scm (nerd-dictation)[license]: Set to GPL2+.
2023-04-16 15:43:51 +02:00
Ellis Kesterton 4f0b2c0c3d
gnu: nerd-dictation: Update to 0-1.0eb44b7.
* gnu/packages/machine-learning.scm (nerd-dictation): Update to 0-1.0eb44b7.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-16 15:43:50 +02:00
Nicolas Goaziou 4c90275e33
gnu: giac: Update to 1.9.0-43.
* gnu/packages/algebra.scm (giac): Update to 1.9.0-43.
[arguments]<#:phases>: Skip failing tests on i686.
2023-04-16 15:43:50 +02:00
jgart 3ea8e9cc1f
gnu: emacs-eat: Update to 0.8.
* gnu/packages/emacs-xyz.scm (emacs-eat): Update to 0.8.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-16 15:43:50 +02:00
Dominik Delgado Steuter 0d490b1e13
gnu: Add emacs-eradio.
* gnu/packages/emacs-xyz.scm (emacs-eradio): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-16 15:43:49 +02:00
Nicolas Goaziou 6c8e719537
gnu: emacs-plz: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-plz): Update to 0.5.4.
2023-04-16 15:43:49 +02:00
Nicolas Goaziou b0961b42dd
gnu: emacs-org: Update to 9.6.4.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.6.4.
2023-04-16 15:43:48 +02:00
Nicolas Goaziou 9f23957e81
gnu: emacs-gptel: Update to 0.3.5.
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.3.5.
2023-04-16 15:43:48 +02:00
Nicolas Goaziou 3efd10e36e
gnu: emacs-cnfonts: Update to 1.1.1.
* gnu/packages/emacs-xyz.scm (emacs-cnfonts): Update to 1.1.1.
2023-04-16 15:43:48 +02:00
Nicolas Goaziou aa4977d26d
gnu: emacs-cape: Update to 0.14.
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 0.14.
2023-04-16 15:43:47 +02:00
Nicolas Goaziou fd3d957858
gnu: emacs-ivy-hydra: Update to 0.14.0.
* gnu/packages/emacs-xyz.scm (emacs-ivy-hydra): Update to 0.14.0.
2023-04-16 15:43:47 +02:00
Nicolas Goaziou c2b885a6a1
gnu: emacs-ivy-avy: Update to 0.14.0.
* gnu/packages/emacs-xyz.scm (emacs-ivy-avy): Update to 0.14.0.
2023-04-16 15:43:46 +02:00
Nicolas Goaziou 4851c170f9
gnu: emacs-sml-mode: Update to 6.12.
* gnu/packages/emacs-xyz.scm (emacs-sml-mode): Update to 6.12.
2023-04-16 15:43:46 +02:00
Nicolas Goaziou dd96432db7
gnu: emacs-pyim: Update to 5.3.2.
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 5.3.2.
2023-04-16 15:43:46 +02:00
Nicolas Goaziou d3ca759688
gnu: emacs-swiper: Update to 0.14.0.
* gnu/packages/emacs-xyz.scm (emacs-swiper): Update to 0.14.0.
2023-04-16 15:43:45 +02:00
Nicolas Goaziou 8f643826cd
gnu: emacs-counsel: Update to 0.14.0.
* gnu/packages/emacs-xyz.scm (emacs-counsel): Update to 0.14.0.
2023-04-16 15:43:45 +02:00
Nicolas Goaziou ffcc7e56c6
gnu: emacs-ivy: Update to 0.14.0.
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.14.0.
2023-04-16 15:43:44 +02:00
Nicolas Goaziou d785c84041
gnu: emacs-subed: Update to 1.2.2.
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.2.
2023-04-16 15:43:44 +02:00
Antero Mejr 8b2d0654ef
gnu: Add emacs-totp.
* gnu/packages/emacs-xyz.scm (emacs-totp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-16 15:43:44 +02:00
jgart 18657219ab
gnu: emacs-ement: Update to 0.8.3.
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.8.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-16 15:43:43 +02:00
Andreas Enge f2166cface
gnu: openldap: Update to 2.6.4 and unify the two variables.
* gnu/packages/openldap.scm (openldap): Update to 2.6.4.
(openldap-for-linphone): Remove variable.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Replace
openldap-for-linphone by openldap.
2023-04-16 13:49:35 +02:00
Brian Cully 1b28cde6a5
gnu: openldap: Fix build.
* gnu/packages/openldap.scm (openldap): Update quoting to use gexps. Remove
reference to libldap_r.la, which no longer exists, and remove custom install
of libldap_r.so. Remove again a phase already removed in commit
0de5e6d653.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-16 13:39:26 +02:00
Jonathan Brielmaier 2d25ea429c
Revert "gnu: icecat: Update to 102.10.0-guix0-preview1 [security fixes]."
This reverts commit e94dcbf3c2.

"gnu: icecat: Update to 102.10.0-guix0-preview1 [security fixes]." was
already pushed as 3ab983d630. And the
`icecat-102.9.0-source` was removed in
"gnu: icedove: Update to 102.10.0 [security fixes]." a741b554cb.
2023-04-16 11:16:56 +02:00
Kaelyn Takata 60594711e9
gnu: python-numpy: Skip failing tests on i686.
* gnu/packages/python-xyz.scm (python-numpy): Skip failing tests on i686.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-15 22:28:58 +02:00
Josselin Poiret df6848565a
gnu: python-pytest: Fix failing test_raising_repr.
* gnu/packages/patches/pytest-fix-unstrable-exception-test.patch: Add new
patch from upstream.
* gnu/packages/check.scm (python-pytest): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-15 22:28:58 +02:00
Andreas Enge d16538c935
Revert "gnu: python-pytest: Update to 7.3.1."
This reverts commit 81682e2e90.
2023-04-15 22:28:58 +02:00
Maxim Cournoyer 0ebc572d07
gnu: clara: Fix build.
* gnu/packages/check.scm (clara) [source]: Add snippet to un-bundle catch2.
[arguments]: Add #:configure-flags argument.
[native-inputs]: Add catch2.
2023-04-15 16:08:20 -04:00
Maxim Cournoyer 81682e2e90
gnu: python-pytest: Update to 7.3.1.
* gnu/packages/check.scm (python-pytest): Update to 7.3.1.
[propagated-inputs]: Add python-exceptiongroup.
2023-04-15 10:28:25 -04:00
Maxim Cournoyer 7ccf994302
gnu: xkeyboard-config: Update to 2.38.
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.38.

Reported-by: Brian Cully <bjc@spork.org>
2023-04-15 00:13:18 -04:00
Maxim Cournoyer ab2f4548a6
gnu: python-pillow: Ungraft.
* gnu/packages/python-xyz.scm (python-pillow): Ungraft, preserving...
[source]: ... the CVE patch.
(python-pillow/security-fixes): Delete variable.
2023-04-15 00:10:13 -04:00
Maxim Cournoyer 52518b6478
gnu: libxkbcommon: Fix indentation.
* gnu/packages/xdisorg.scm (libxkbcommon): Fix indentation.
2023-04-15 00:10:13 -04:00
Maxim Cournoyer 5841ac3981
gnu: libxkbcommon: Unconditionally add wayland to native-inputs.
* gnu/packages/xdisorg.scm (libxkbcommon) [native-inputs]: Always add wayland.
2023-04-15 00:10:13 -04:00
Maxim Cournoyer 929551f634
gnu: python-jsonschema: Update to 4.5.1.
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 4.5.1.
[arguments]: Remove extraneous inputs, outputs bindings from check phase
override.  Add pretend-version phase.
[propagated-inputs]: Add python-importlib-metadata and
python-typing-extensions.  Remove python-six.
* gnu/packages/astronomy.scm (python-asdf): Replace python-jsonschema-next
with python-jsonschema.
(python-asdf-standard, python-gwcs): Likewise.
* gnu/packages/matrix.scm (python-matrix-nio): Likewise.
* gnu/packages/python-xyz.scm (python-robotframework): Likewise.
2023-04-15 00:09:08 -04:00
Maxim Cournoyer 7943de8ece
gnu: iptables: Clean-up configure flags.
* gnu/packages/linux.scm (iptables) [arguments]: Address TODO comment.
2023-04-14 23:42:37 -04:00
Maxim Cournoyer ebf85c3c39
gnu: hplip: Update to 3.23.3.
* gnu/packages/cups.scm (hplip): Update to 3.23.3.
[arguments]: Remove the fix-build-with-python-3.8 phase.
2023-04-14 23:37:07 -04:00
Maxim Cournoyer d8de115d35
gnu: hplip: Remove input labels.
* gnu/packages/cups.scm (hplip) [inputs]: Remove input labels.
2023-04-14 23:37:07 -04:00
Maxim Cournoyer 298d0d381e
gnu: hplip: Use gexps.
* gnu/packages/cups.scm (hplip) [arguments]: Use gexps.
* gnu/packages/cups.scm (hplip-minimal): Likewise.
2023-04-14 23:37:06 -04:00
Maxim Cournoyer da923bc122
gnu: hplip: Re-order fields.
* gnu/packages/cups.scm (hplip): Re-order fields.
2023-04-14 23:37:06 -04:00
Maxim Cournoyer 2a97bf3c50
gnu: hplip: Update to 3.22.10.
* gnu/packages/cups.scm (hplip): Update to 3.22.10.
[arguments]: Absorb the fix-more-hard-coded-file-names phase from hplip-next
into the fix-hard-coded-file-names phase.
(hplip-next): Delete variable.
2023-04-14 23:37:06 -04:00
Maxim Cournoyer 802a3b7ba3
gnu: python-pytest-7.1: Deprecate package.
The source was adjusted using the following command:

   $ git grep -rl python-pytest-7.1 |
     xargs sed -i 's/python-pytest-7.1/python-pytest/g'

* gnu/packages/check.scm (python-pytest-7.1): Delete variable.
2023-04-14 23:37:06 -04:00
Maxim Cournoyer fa2c1689c8
gnu: valgrind/interactive: Rely on non-stripped glibc symbols.
* gnu/packages/valgrind.scm (valgrind/interactive)
[source]: Remove patches.
[arguments]: Delete field.
* gnu/packages/patches/valgrind-fix-default-debuginfo-path.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2023-04-14 23:37:06 -04:00
Maxim Cournoyer cfe4a07775
gnu: ruby-tzinfo-data: Remove #:guile argument in file-union call.
* gnu/packages/ruby.scm (ruby-tzinfo-data) [arguments]: Strip trailing #t.
[native-inputs]: Remove #:guile argument in file-union call.
2023-04-14 23:37:05 -04:00
Maxim Cournoyer 97e37a8a79
gnu: wrap-python3: Replace assoc-ref call with gexp variable.
* gnu/packages/python.scm (wrap-python3) [arguments]: Replace assoc-ref call
with gexp variable in builder.
2023-04-14 23:37:05 -04:00
Maxim Cournoyer ca0e4a4b5e
gnu: python-pluggy: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-pluggy): Update to 1.0.0.
(python-pluggy-next): Delete variable.
* gnu/packages/check.scm (python-pytest-7.1)
[propagated-inputs]: Remove python-pluggy replacement.
* gnu/packages/databases.scm (datasette) [propagated-inputs]: Replace
python-pluggy-next with python-pluggy.
2023-04-14 23:37:05 -04:00
Maxim Cournoyer 55f051e28c
gnu: python-docutils: Update to 0.19.
* gnu/packages/python-xyz.scm (python-docutils): Update to 0.19.
[arguments]: Strip trailing #t.
(python-docutils-0.19): Delete variable.
2023-04-14 23:37:05 -04:00
Maxim Cournoyer 530cf34edb
gnu: source-highlight: Inline skip-doc-directory phase.
* gnu/packages/pretty-print.scm (source-highlight) [source]: Fix indentation.
[arguments]: Inline skip-doc-directory phase.
2023-04-14 23:37:04 -04:00
Maxim Cournoyer 7d3bb28a6f
gnu: openldap: Update to 2.6.3.
* gnu/packages/openldap.scm (openldap): Update to 2.6.3.
[arguments]: Integrate updated phases from openldap-2.6 package.  Strip
trailing #t.
2023-04-14 23:37:04 -04:00
Maxim Cournoyer e244ea2445
gnu: ghc-9.2: Make the skip-T21694-i686 phase unconditional.
* gnu/packages/haskell.scm (ghc-9.2) [arguments]: Remove match conditional for
the skip-T21694-i686 phase.
2023-04-14 23:37:04 -04:00
Maxim Cournoyer e6090152a6
gnu: freetype: Update remove-reference-to-pkg-config phase.
* gnu/packages/fontutils.scm (freetype) [arguments]: Use the newer
remove-reference-to-pkg-config phase variant, with a small adjustment to make
the target group optional.  Use gexps and search-input-file.
[propagated-inputs]: Update comment regarding harfbuzz.
2023-04-14 23:36:45 -04:00
Maxim Cournoyer 91c9bfc8c1
gnu: poppler-next: Delete variable.
* gnu/packages/pdf.scm (poppler-next): Delete variable.
* gnu/packages/gnome.scm (evince) [inputs]: Replace poppler-next with poppler.
2023-04-14 21:04:27 -04:00
Maxim Cournoyer 3c8a4d64ff
maint: Merge sanity-check-next.py into sanity-check.py.
* gnu/packages/aux-files/python/sanity-check-next.py: Rename to...
* gnu/packages/aux-files/python/sanity-check.py: ... this.
* guix/build-system/pyproject.scm (sanity-check.py): Adjust file name.
* Makefile.am (AUX_FILES): De-register sanity-check-next.py.
2023-04-14 21:01:34 -04:00
Maxim Cournoyer 20707a06d2
gnu: nss: Add which to to native inputs and use regular nspr.
* gnu/packages/nss.scm (nspr-next): Delete variable.
(nss) [native-inputs]: Add which.
[propagated-inputs]: Replace nspr-next with nspr.
* gnu/packages/gnuzilla.scm (icecat-minimal): Likewise.
2023-04-14 21:00:18 -04:00
Maxim Cournoyer c28b552d52
gnu: python-clickgen: Replace python-numpy-next with python-numpy.
* gnu/packages/python-xyz.scm (python-clickgen)
[propagated-inputs]: Replace python-numpy-next with python-numpy.
2023-04-14 20:43:49 -04:00
Maxim Cournoyer f14aa6d0a3
gnu: cups-minimal: Add config to native inputs unconditionally.
* gnu/packages/cups.scm (cups-minimal) [native-inputs]: Always add config.
2023-04-14 20:41:18 -04:00
Leo Famulari 7c7853d269
gnu: linux-libre 5.15: Update to 5.15.107.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.107.
(linux-libre-5.15-pristine-source): Update hash.
2023-04-14 17:55:28 -04:00
Leo Famulari be823fa8fb
gnu: linux-libre 6.1: Update to 6.1.24.
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.24.
(linux-libre-6.1-pristine-source): Update hash.
2023-04-14 17:55:28 -04:00
Leo Famulari a4e80883bb
gnu: linux-libre: Update to 6.2.11.
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.11.
(linux-libre-6.2-pristine-source): Update hash.
2023-04-14 17:55:28 -04:00
Maxim Cournoyer 3bacd3c76a
Merge branch 'master' into core-updates.
Conflicts:
	gnu/local.mk
	gnu/packages/build-tools.scm
	gnu/packages/certs.scm
	gnu/packages/check.scm
	gnu/packages/compression.scm
	gnu/packages/cups.scm
	gnu/packages/fontutils.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/guile.scm
	gnu/packages/ibus.scm
	gnu/packages/image-processing.scm
	gnu/packages/linux.scm
	gnu/packages/music.scm
	gnu/packages/nss.scm
	gnu/packages/pdf.scm
	gnu/packages/python-xyz.scm
	gnu/packages/qt.scm
	gnu/packages/ruby.scm
	gnu/packages/shells.scm
	gnu/packages/tex.scm
	gnu/packages/video.scm
	gnu/packages/vulkan.scm
	gnu/packages/web.scm
	gnu/packages/webkit.scm
	gnu/packages/wm.scm
2023-04-14 17:15:08 -04:00
Maxim Cournoyer df3391c030
gnu: librsvg: Fix gdk-pixbuf-thumbnailer file name.
* gnu/packages/gnome.scm (librsvg)
[arguments]: Add patch-gdk-pixbuf-thumbnailer phase.
2023-04-14 15:43:21 -04:00
Maxim Cournoyer 7c88cfdb01
gnu: librsvg: Use gexps.
* gnu/packages/gnome.scm (librsvg) [arguments]: Use gexps, #$output and
search-input-directory in phases.
2023-04-14 15:42:34 -04:00
Maxim Cournoyer e6604e4b43
gnu: meson: Update to 1.1.0.
* gnu/packages/build-tools.scm (meson): Update to 1.1.0.
2023-04-14 15:34:54 -04:00
Maxim Cournoyer 4bbd0f8c7a
Revert "gnu: python-h5py: Update to 3.8.0."
This reverts commit a1c60ae50e.  It should use
hdf5-1.14, but the default one is still at hdf5-1.10.  It also broke diffoscope.
2023-04-14 15:12:20 -04:00
Maxim Cournoyer 0ced35ce40
gnu: ansible: Update to 7.4.0.
* gnu/packages/admin.scm (ansible): Update to 7.4.0.
2023-04-14 15:12:20 -04:00
Maxim Cournoyer fc5dd35b07
gnu: ansible-core: Update to 2.14.4.
* gnu/packages/admin.scm (ansible-core): Update to 2.14.4.
[arguments]: Add skip-controller-tests phase.  Update preserve-pythonpath
and check phases.  Honor parallel-job-count in check phase.
2023-04-14 15:12:20 -04:00
Maxim Cournoyer 4116b7a9f5
gnu: telepathy-idle: Update to 0.2.2-0.b516eab.
* gnu/packages/freedesktop.scm (telepathy-idle): Update to 0.2.2-0.b516eab.
[inputs]: Replace python-2 with python-wrapper, python2-dbus with python-dbus.
2023-04-14 15:12:19 -04:00
Maxim Cournoyer a8c283ce69
gnu: xsettingsd: Use cmake-build-system.
* gnu/packages/xdisorg.scm (xsettingsd) [build-system]: Use
cmake-build-system.
[arguments]: Remove #:scons and #:scons-flags arguments.  Add
 #:configure-flags argument.  Remove patch-sconstruct and install phases.  Add
 disable-problematic-tests phase.
[native-inputs]: Remove googletest-source; drop labels.
2023-04-14 15:12:19 -04:00
Maxim Cournoyer 22a79d0137
gnu: Add missing import in (gnu packages fontutils).
This was erroneously not committed as part of 83397434b1.

* gnu/packages/fontutils.scm: Add missing import.
2023-04-14 15:12:19 -04:00
Maxim Cournoyer 6d00578e72
gnu: python-afdko: Add bash-minimal to inputs.
* gnu/packages/fontutils.scm (python-afdko) [inputs]: Add bash-minimal.
2023-04-14 15:12:19 -04:00
Maxim Cournoyer f44b9511c7
gnu: font-abattis-cantarell: Update to 0.303-0.e049149.
* gnu/packages/fonts.scm (font-abattis-cantarell): Update to 0.303-0.e049149.
[native-inputs]: Remove python-statmake.
2023-04-14 15:12:18 -04:00
Maxim Cournoyer efeb08a3a6
gnu: psautohint: Disable a failing test.
* gnu/packages/fontutils.scm (psautohint) [build-system]: Use
pyproject-build-system.
[arguments]: Remove check phase override.  Add #:test-flags, disabling a new test.
2023-04-14 15:12:18 -04:00
Maxim Cournoyer c4daf1acaf
gnu: python-fontparts-bootstrap: Update to 0.11.0.
* gnu/packages/fontutils.scm (python-fontparts-bootstrap): Update to 0.11.0.
2023-04-14 15:12:18 -04:00
Maxim Cournoyer b61b12c4c0
gnu: python-unicodedata2: Update to 15.0.0.
* gnu/packages/python-xyz.scm (python-unicodedata2): Update to 15.0.0.
2023-04-14 15:12:18 -04:00
Maxim Cournoyer 294ff50d64
gnu: python-zopfli: Update to 0.2.2.
* gnu/packages/python-compression.scm (python-zopfli): Update to 0.2.2.
2023-04-14 15:12:18 -04:00
Maxim Cournoyer 47eca058bc
gnu: python-lz4: Update to 4.3.2.
* gnu/packages/python-compression.scm (python-lz4): Update to 4.3.2.
2023-04-14 15:12:17 -04:00
Maxim Cournoyer b64add6ff6
gnu: python-ufo2ft: Update to 2.31.0.
* gnu/packages/fontutils.scm (python-ufo2ft): Update to 2.31.0.
[build-system]: Use pyproject-build-system.
[arguments]: Delete field.
2023-04-14 15:12:17 -04:00
Maxim Cournoyer ec8df31ebf
gnu: python-statmake: Update to 0.6.0.
* gnu/packages/fontutils.scm (python-statmake): Update to 0.6.0.
2023-04-14 15:12:17 -04:00
Maxim Cournoyer 2e83aba8cd
gnu: python-afdko: Update to 3.9.4.
* gnu/packages/fontutils.scm (python-afdko): Update to 3.9.4.
[source]: Remove patch.
[arguments]: Disable a few extra tests in the check phase override.
Delete use-system-libxml2 phase.  Update patch-problematic-requirements phase.
* gnu/packages/patches/python-afdko-suppress-copyright-test.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2023-04-14 15:12:17 -04:00
Maxim Cournoyer 6b1f324749
gnu: python-fonttools-next: Update to 4.39.3.
* gnu/packages/python-xyz.scm (python-fonttools-next): Update to 4.39.3.
(python-fonttools-full) [arguments]: Skip the MtiTest suite in the check phase
override.
2023-04-14 15:12:17 -04:00
Maxim Cournoyer 40f42329dc
gnu: python-fontmath: Update to 0.9.3.
* gnu/packages/fontutils.scm (python-fontmath): Update to 0.9.3.
2023-04-14 15:12:16 -04:00
Maxim Cournoyer 2dadc917bb
gnu: python-pyftpdlib: Update to 1.5.7.
* gnu/packages/python-xyz.scm (python-pyftpdlib): Update to 1.5.7.
2023-04-14 15:12:16 -04:00
Mark H Weaver e94dcbf3c2
gnu: icecat: Update to 102.10.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2023-1945, CVE-2023-29531, CVE-2023-29532,
CVE-2023-29533, CVE-2023-29535, CVE-2023-29536, CVE-2023-29539,
CVE-2023-29541, CVE-2023-29542, CVE-2023-29545, CVE-2023-29548,
CVE-2023-29550, and MFSA-TMP-2023-0001.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
Remove the vestigial RENAME_CMD environment variable setting.
(icecat-102.9.0-source): New variable.
(icedove-source): Use it.
2023-04-14 15:12:16 -04:00
Felix Lechner 76f29dc72d
gnu: heimdal: Enable OpenLDAP support.
* gnu/packages/kerberos.scm (heimdal)
[native-inputs]: Add bison, flex and pkg-config.
[inputs]: Remove mit-krb5.  Add libcap-ng and openldap.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-14 15:12:16 -04:00
Felix Lechner 770112f235
gnu: heimdal: Apply patch to fix CVE-2022-45142.
Several recent Heimdal releases are affected by the serious vulnerability
CVE-2022-45142, which NIST scored as "7.5 HIGH". [1]

At the time of writing, the upstream developers had not yet cut any releases
post-7.8.0, which is why the patch is being applied here.

The patch was extracted from Helmut Grohne's public vulnerability
disclosure. [2]

[1] https://nvd.nist.gov/vuln/detail/CVE-2022-45142
[2] https://www.openwall.com/lists/oss-security/2023/02/08/1

* gnu/packages/patches/heimdal-CVE-2022-45142.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/kerberos.scm (heimdal)[source]: Apply it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-14 15:12:15 -04:00
Felix Lechner f508bc1491
gnu: heimdal: Update to 7.8.0 [fixes CVE-2022-44640].
* gnu/packages/kerberos.scm (heimdal): Update to 7.8.0.
[source]: Adjust date in snippet.
[native-inputs]: Add python.  Remove perl.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-14 15:12:15 -04:00
Maxim Cournoyer 085a6928bd
Revert "gnu: opendht: Update to 2.5.2."
This reverts commit 31534f4e4d.  It broke libjami.
2023-04-14 15:12:15 -04:00
Maxim Cournoyer 91675f22d3
gnu: opendht: Update to 2.5.2.
* gnu/packages/networking.scm (opendht): Update to 2.5.2.
2023-04-14 15:12:15 -04:00
Nicolas Goaziou 14e01c54c7
gnu: emacs-gptel: Update to 0.3.2.
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.3.2.
2023-04-14 15:12:15 -04:00
Juliana Sims 592a8dffce
gnu: gerbil: Use G-expressions.
* gnu/packages/scheme.scm (gerbil)[source, arguments]: Reindent.
[arguments]: Rewrite using G-expressions. Do not return #t from custom
phases. Use #:tests? instead of deleting the check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-14 15:12:15 -04:00
Juliana Sims e3089dc0ee
gnu: gerbil: Update to 0.17.0.
* gnu/package/scheme.scm (gerbil): Update to 0.17.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-14 15:12:14 -04:00
Rostislav Svoboda c694f61897
gnu: Add emacs-gptel.
* gnu/packages/emacs-xyz.scm (emacs-gptel): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-14 15:12:14 -04:00
Nicolas Graves 0c00fea3c2
gnu: Add python-sentencepiece.
* gnu/packages/machine-learning.scm (python-sentencepiece): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-14 15:12:14 -04:00
Nicolas Graves 8403c59328
gnu: Add sentencepiece.
* gnu/packages/machine-learning.scm (sentencepiece): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-14 15:12:14 -04:00
Efraim Flashner da26ab7295
gnu: go-1.18: Fix packaging logic.
* gnu/packages/golang.scm (go-1.18)[arguments]: Only replace the custom
'patch-gcc:lib phase on certain architectures.
2023-04-14 15:12:13 -04:00
Efraim Flashner 34e5ba942e
gnu: go-1.17: Fix test suite on powerpc64le-linux.
* gnu/packages/golang.scm (go-1.17)[arguments]: Use custom
'patch-gcc:lib phase on powerpc64le-linux. Add a phase to adjust the
allowed size of an executable in the test suite.
[inputs]: Keep gcc:lib as an input on powerpc64le-linux.
(go-1.18)[arguments]: Delete custom 'adjust-test-suite phase.
2023-04-14 15:12:13 -04:00
Efraim Flashner 8a17609dd0
gnu: go-1.18: Adjust patch-gcclib phase.
* gnu/packages/golang.scm (go-1.18)[arguments]: Adjust the custom
'patch-gcc:lib phase for changes in the source code.
2023-04-14 15:12:12 -04:00
Kyle Andrews 4e9c9a63cc
gnu: Add r-tarchetypes.
* gnu/packages/cran.scm (r-tarchetypes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-14 15:12:12 -04:00
Kyle Andrews b4f5ec6760
gnu: Add r-targets.
* gnu/packages/cran.scm (r-targets): New variable.,

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-14 15:12:12 -04:00
gemmaro 99438cf119
gnu: Add youplot.
* gnu/packages/plotutils.scm (youplot): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-14 15:12:12 -04:00
gemmaro 269f8dce25
gnu: Add ruby-unicode-plot.
* gnu/packages/plotutils.scm (ruby-unicode-plot): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-14 15:12:12 -04:00
Bruno Victal 865df7f080
services: mpd: Use proper records for user and group fields.
Deprecate using strings for these fields and prefer user-account
(resp. user-group) instead to avoid duplication within account-service-type.

Fixes #61570 <https://issues.guix.gnu.org/61570>.

* gnu/services/audio.scm (%mpd-user, %mpd-group)
(mpd-serialize-user-account, mpd-serialize-user-group)
(mpd-user-sanitizer, mpd-group-sanitizer): New variables.
(mpd-configuration)[user]: Use user-account as value type.
Sanitize via mpd-user-sanitizer.
[group]: Use user-group as value type.
Sanitize via mpd-group-sanitizer.
(mpd-shepherd-service): Adjust accordingly.
(mpd-accounts): Likewise.
* doc/guix.texi (Audio Services)[Music Player Daemon]: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-04-14 15:12:11 -04:00
Bruno Victal 420adff18e
services: mpd: Fix unintentional API breakage for mixer-type field.
* gnu/services/audio.scm (mpd-output)[mixer-type]: Use sanitizer to
accept both strings and symbols as values.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-04-14 15:12:11 -04:00
Liliana Marie Prikler 7eefd64a37
gnu: Add python-clingraph.
* gnu/packages/potassco.scm (python-clingraph): New variable.
2023-04-14 15:12:11 -04:00