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138086 Commits (92c323fdee7aa072761ed83654c49748e8be847f)

Author SHA1 Message Date
Wilko Meyer 92c323fdee
gnu: linux-libre 6.6: Update to 6.6.40. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.40.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: Ia5832159f507cde2bcc37c1a65a628f28d845acf
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-17 22:27:17 -04:00
Ricardo Wurmus 7ccd8ade8b
gnu: r-paradox: Add missing input. 
* gnu/packages/cran.scm (r-paradox)[native-inputs]: Add r-knitr.

Change-Id: I158072d418b0d0afea2862620527e646d1c40360
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 860f763400
gnu: r-tximeta: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.22.1.

Change-Id: I213ab8df594f91a9366a9b3fc7498100a264c40f
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 0b1f912ef0
gnu: r-sparsearray: Update to 1.4.8. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.4.8.

Change-Id: I58f280938a8436c9ca4ce16f28195aabb4c61da8
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 1aaf7c961d
gnu: r-s4arrays: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.4.1.

Change-Id: Ic271e88efc4bebf001a34147ab99d5cac76899ab
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 70ce8ee78e
gnu: r-multiassayexperiment: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.30.2.

Change-Id: Iad9beba82d385c9a9785f243b39238fa7c6cca8c
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus e531a64a61
gnu: r-biocstyle: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.32.1.

Change-Id: Ic9b3a8596c64c44930fa591527a67c9d80a3b8e5
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 6ac5e831f0
gnu: r-opencyto: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.16.1.

Change-Id: Ica1c5d9cdc5b89fd8d66137deaa37af6405c0e93
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 2d046146a7
gnu: r-xcms: Update to 4.2.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.2.

Change-Id: I13a9d324aacd3edc2c9e4f64df68d8efd22a3ca1
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 0ee810eb3b
gnu: r-dose: Update to 3.30.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.1.

Change-Id: I7839680a6cc3b11083c61c05c392435b985bd522
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus bbdaf10a18
gnu: r-residualmatrix: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.1.

Change-Id: Ibeed009e6ae9892dabb90e714c014f5df0748a3d
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 012883f329
gnu: r-goseq: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.56.0.

Change-Id: I96328b6c9ee60f8ecfc218861da8343c15979270
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 52898de521
gnu: r-apeglm: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.26.1.

Change-Id: I6feea7900ef40e81cecfa48a6b1bc14ebbafc38c
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 60c809cd0b
gnu: r-qfeatures: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.1.
[propagated-inputs]: Add r-reshape2.

Change-Id: Id30163d56abcb36778f32279418c10e63a2866b9
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 3169281f54
gnu: r-oligo: Update to 1.68.2. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.2.

Change-Id: Ieb77c06575edf036355b3cb0085f3dfae8bfb9c5
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 3f87a86b9f
gnu: r-zellkonverter: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.1.

Change-Id: I7b50645115df19dc0c1b9ba94c7f4f4e00cf51f5
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus a36b63d144
gnu: r-txdbmaker: Update to 1.0.1. 
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.0.1.

Change-Id: Id414fc98b78be2f876c2cc2d1157403f5e7285a6
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus e49bd5772f
gnu: r-stringdb: Update to 2.16.4. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.4.

Change-Id: I0d8f0557d914da617cdf55b180484c08c6bc1e2b
 2024-07-17 22:38:36 +02:00
Ricardo Wurmus 160dbc754f
gnu: r-spectra: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.1.

Change-Id: I679be137d79b001c91f2cedc3cf10bb95d517102
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 8aa069af35
gnu: r-sesame: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.2.
[propagated-inputs]: Remove r-illuminaio.

Change-Id: I9f1d7893351d0396c16f45e01c160534118d2f28
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus b867004a25
gnu: r-mmuphin: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.18.1.

Change-Id: Ib282af9250fb29e2d40f62b8bf93d9c3fc400a98
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus d72e4d2764
gnu: r-limma: Update to 3.60.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.3.

Change-Id: Iae5b2769ac2011b1ec185be45f12a180e11cf87b
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 065d781b1c
gnu: r-keggrest: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.44.1.

Change-Id: I3aad773f4295755463d293f0bd0770a236a4cf2d
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus b3d41e3268
gnu: r-gypsum: Update to 1.0.1. 
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.0.1.
[propagated-inputs]: Remove r-paws-storage.

Change-Id: I2100aec90f1b3662d21f38d9c3057273c1885f13
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 98cb090e1c
gnu: r-gsva: Update to 1.52.3. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.52.3.

Change-Id: I7a9f289261890eef5d414f0aee133e4c4defa5ae
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 42787f343d
gnu: r-genomicranges: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.56.1.

Change-Id: I547ffe5e04cab142068cc2c6e02008047e382999
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus d803e1bd14
gnu: r-genomeinfodb: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.40.1.

Change-Id: I8b2c267e45df617d87ec9435f1b0915d131b2870
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 136a454ff2
gnu: r-enmix: Update to 1.40.2. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.40.2.

Change-Id: I48d2d72ddc6eff87c6416b4dd883acc408ec811d
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 2c6b509327
gnu: r-champ: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.34.0.

Change-Id: Iee7cd3002bb0f17d0f270aa5b1398050574bd539
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus a7fedc7fa0
gnu: r-biostrings: Update to 2.72.1. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.1.

Change-Id: Ic9bb3cb2f7cc5312dc4396211faea3eddab758a2
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 07086a4275
gnu: r-biomart: Update to 2.60.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.1.

Change-Id: I03a38932c581f8e6e5d7c4f694aac3f693d52a15
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 68a314d470
gnu: r-dmrcate: Update to 3.0.3. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.3.

Change-Id: I5807264b3bb744f292673688e8b45dae816ebafa
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 775fa6631d
gnu: r-delayedarray: Update to 0.30.1. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.1.

Change-Id: I14176f2b7111ce22560ab36f59a950a28c0a14cd
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 1fc6f89cb3
gnu: r-decoupler: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.10.0.

Change-Id: I6fbfefb53e907106cf33e6674f984a3e9bbfdf42
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 349925f04b
gnu: r-asics: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.1.

Change-Id: I24dabd37217ba4e904f1f5c7a6f4aed69076a91f
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 8bd94e42ba
gnu: r-alabaster-se: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-alabaster-se): Update to 1.4.1.

Change-Id: I758d1c6662e1b8a253e6c99b1679e14599df6670
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus a23363ae59
gnu: r-alabaster-ranges: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-alabaster-ranges): Update to 1.4.2.

Change-Id: I7f02af58acd00672db10bd4de75f863bba9d7c06
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus a9e3312327
gnu: r-alabaster-matrix: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-alabaster-matrix): Update to 1.4.2.

Change-Id: I49d29c3382153b0ecb32dd1053e8b7e62b8cd0bd
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 12ccddaf9a
gnu: r-alabaster-base: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-alabaster-base): Update to 1.4.2.

Change-Id: I919fdb38450e527032e77be209d2a95f3e5c5484
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 6fbd56a4d7
gnu: r-genelendatabase: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.40.1.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I3f9a13020f4277ea1e898af371dd0e3d8dd32f70
 2024-07-17 22:38:35 +02:00
Ricardo Wurmus 90340ecc07
gnu: r-mumin: Update to 1.48.4. 
* gnu/packages/statistics.scm (r-mumin): Update to 1.48.4.

Change-Id: Ie09d88a6200eb86c208c5dc5c9aee9ee52699756
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 9a20f46def
gnu: r-clubsandwich: Update to 0.5.11. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.11.
[propagated-inputs]: Add r-lifecycle.

Change-Id: Ia80ff5befd136c5f3893533e0e41bf95fca61a22
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus b11e662121
gnu: r-pbkrtest: Update to 0.5.3. 
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5.3.
[propagated-inputs]: Add r-doby.

Change-Id: I5206038d879359d6c36722b18895a51230d4cdd1
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 400233e601
gnu: r-lme4: Update to 1.1-35.4. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.4.

Change-Id: I29581774b84b3313059729b83f1ffce00da41ae0
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 4fd182a223
gnu: r-quantreg: Update to 5.98. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.98.

Change-Id: Ic46fc2cd3bb5819015b8f2b738f7843331c6b9a3
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 2aae18a38f
gnu: r-minqa: Update to 1.2.7. 
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.7.

Change-Id: I3e50094f3cb8ef30c2a40cce781d5a5292a0ecc9
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus cb52c44323
gnu: r-vgam: Update to 1.1-11. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-11.

Change-Id: I2900b06c64a38b38014344a84a282849ebfd0ca0
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 1b919cfafb
gnu: r-robustbase: Update to 0.99-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-3.

Change-Id: I31c42a3760a5487861aa7de4127abe012e0ba04d
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus aa1ea9f2b4
gnu: r-hmisc: Update to 5.1-3. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-3.

Change-Id: I6f80f2408564769e83a559066a85c9590f2d7578
 2024-07-17 22:38:34 +02:00
Ricardo Wurmus 98e8c728ed
gnu: r-biased-urn: Update to 2.0.12. 
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.12.

Change-Id: Ie54c35847a3e593ee1986aac46f704be44097b99
 2024-07-17 22:38:34 +02:00