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Author SHA1 Message Date
Brian Leung 2322c9458c
gnu: Add emacs-git-gutter-fringe. 
* gnu/packages/emacs-xyz.scm (emacs-git-gutter-fringe): New variable.
 2019-10-14 14:08:40 -07:00
Brian Leung 36f6ed2c64
gnu: Add emacs-fringe-helper. 
* gnu/packages/emacs-xyz.scm (emacs-fringe-helper): New variable.
 2019-10-14 14:08:40 -07:00
Ricardo Wurmus 19e4261837
gnu: Add methyldackel. 
* gnu/packages/bioinformatics.scm (methyldackel): New variable.
 2019-10-14 22:49:04 +02:00
Efraim Flashner dc505e3eb8
gnu: vim-fugitive: Update to 3.1. 
* gnu/packages/vim.scm (vim-fugitive): Update to 3.1.
 2019-10-14 20:44:02 +03:00
Tobias Geerinckx-Rice c7c23eb622
gnu: ddcutil: Update to 0.9.7. 
* gnu/packages/hardware.scm (ddcutil): Update to 0.9.7.
 2019-10-14 19:38:44 +02:00
Tobias Geerinckx-Rice ef68b35da9
gnu: python-py3status: Update to 3.21. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.21.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice 53a3ebed68
gnu: python-colorspacious: Update to 1.1.2. 
* gnu/packages/python-xyz.scm (python-colorspacious): Update to 1.1.2.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice 4df49d1968
gnu: python-glob2: Update to 0.7. 
* gnu/packages/python-xyz.scm (python-glob2): Update to 0.7.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice 8e45ec509e
gnu: sqitch: Remove perl-file-homedir input. 
* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
 2019-10-14 19:33:18 +02:00
Efraim Flashner 303469d69e
gnu: Add enlightenment-wayland. 
* gnu/packages/enlightenment.scm (enlightenment-wayland): New variable.
 2019-10-14 20:07:35 +03:00
Ludovic Courtès 29ea9e14ee
gnu: gtkmm: Update to 3.24.1. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.24.1.
 2019-10-14 18:25:31 +02:00
Ludovic Courtès 7a6bbe9b68
gnu: gspell: Update to 1.8.2. 
* gnu/packages/gnome.scm (gspell): Update to 1.8.2.
 2019-10-14 18:25:31 +02:00
Ludovic Courtès a00a946ac5
gnu: gfortran: Add version 9.x. 
* gnu/packages/gcc.scm (gfortran-9): New variable.
 2019-10-14 18:25:31 +02:00
Maurice Brémond 06e1239502
gnu: mumps: Build and install shared libraries. 
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Maurice Brémond 5dbc79eb60
gnu: mumps: Update to 5.2.1. 
* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Ricardo Wurmus b06cdce923
gnu: Add r-velocyto. 
* gnu/packages/bioinformatics.scm (r-velocyto): New variable.
 2019-10-14 18:22:46 +02:00
Ricardo Wurmus 40be965e28
gnu: Add r-phastcons100way-ucsc-hg19. 
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
 2019-10-14 18:09:37 +02:00
Pierre Neidhardt 14db074e28
gnu: Add emacs-sly-package-inferred. 
* gnu/packages/emacs-xyz.scm (emacs-sly-package-inferred): New variable.
 2019-10-14 18:00:33 +02:00
Pierre Neidhardt de36efc2e0
gnu: Add emacs-sly-macrostep. 
* gnu/packages/emacs-xyz.scm (emacs-sly-macrostep): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt b0cf64c0bc
gnu: Add emacs-sly-named-readtables. 
* gnu/packages/emacs-xyz.scm (emacs-sly-named-readtables): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt 6078c0043d
gnu: emacs-sly-asdf: Update to 20191013. 
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20191013.
 2019-10-14 18:00:32 +02:00
Stephen Webber 534610d820
gnu: Add emacs-dimmer. 
* gnu/packages/emacs-xyz.scm (emacs-dimmer): New variable.
 2019-10-14 17:19:54 +02:00
Tobias Geerinckx-Rice 8c26b18453
gnu: sudo: Update to 1.8.28 [fixes CVE-2019-14287]. 
* gnu/packages/admin.scm (sudo): Update to 1.8.28.
 2019-10-14 17:14:46 +02:00
Tobias Geerinckx-Rice 41cc799357
gnu: r-fields: Use HTTPS home-page. 
* gnu/packages/cran.scm (r-fields)[home-page]: Use HTTPS.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice e96a56f62d
gnu: r-fields: Update to 9.9. 
* gnu/packages/cran.scm (r-fields): Update to 9.9.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice f64cd5d1ac
gnu: sqitch: Update to 1.0.0. 
* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice 8fc3a337ab
gnu: network-manager-applet: Update to 1.8.24. 
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.24.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice b55e328941
gnu: poedit: Update to 2.2.4. 
* gnu/packages/poedit.scm (poedit): Update to 2.2.4.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice 7f07dd7f0e
gnu: perl-cache-fastmmap: Update to 1.48. 
* gnu/packages/perl.scm (perl-cache-fastmmap): Update to 1.48.
 2019-10-14 17:14:45 +02:00
Brian Leung 92f92a0fc8
gnu: emacs-unpackaged-el: Update to 0-3.746801a. 
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el): Update to 0-3.746801a.
 2019-10-14 00:30:29 -07:00
Brian Leung 34d2367dc1
gnu: emacs-ivy-rich: Update to 0.1.4-2.7a667b1. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-rich): Update to 0.1.4-2.7a667b1.
 2019-10-14 00:30:24 -07:00
Eric Bavier bd04fe8786
gnu: HandBrake: Update to 1.2.2. 
* gnu/packages/video.scm (handbrake): Update to 1.2.2.
 2019-10-13 22:54:12 -05:00
Eric Bavier 136e3b392b
gnu: stress-make: Fix build and update. 
* gnu/packages/debug.scm (stress-make)[version]: Update to latest upstream
commit.  Bump revision.  Use 'git-version'.
[source]: Update url.  Use 'git-file-name'.
[home-page]: Update url likewise.
[arguments]: Add 'setup-go' phase.
[license]: Update license file name.
 2019-10-13 22:17:38 -05:00
Tobias Geerinckx-Rice 217f22d16a
gnu: xwd: Fix typo in description. 
* gnu/packages/xorg.scm (xwd)[description]: Fix typo.
 2019-10-14 00:40:30 +02:00
Tobias Geerinckx-Rice 509551c2a8
gnu: xwininfo: Update to 1.1.5. 
* gnu/packages/xorg.scm (xwininfo): Update to 1.1.5.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice 9cdf9468dd
gnu: emacs-nhexl-mode: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode)[home-page]: Use HTTPS.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d915065bac
gnu: emacs-nhexl-mode: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode): Update to 1.3.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice fc319fde1a
gnu: emacs-darkroom: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-darkroom): Update to 0.2.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d3dfeaa8fe
gnu: emacs-let-alist: Update to 1.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-let-alist): Update to 1.0.6.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d0b9fc9a89
gnu: emacs-csv-mode: Use HTTPS. 
* gnu/packages/emacs-xyz.scm (emacs-csv-mode)[source, home-page]: Use HTTPS.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice 80fd379784
gnu: emacs-csv-mode: Update to 1.9. 
* gnu/packages/emacs-xyz.scm (emacs-csv-mode): Update to 1.9.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice 5aa5187128
gnu: emacs-load-relative: Update to 1.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-load-relative): Update to 1.3.1.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice ca49db2735
gnu: emacs-debbugs: Update to 0.20. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.20.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice a201b0973e
gnu: starman: Update to 0.4015. 
* gnu/packages/web.scm (starman): Update to 0.4015.
 2019-10-14 00:32:31 +02:00
David Wilson 1c463524c8
gnu: Add playerctl. 
* gnu/packages/music.scm (playerctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-14 00:08:33 +02:00
Kyle Meyer ff73bbf410
gnu: git-annex: Update to 7.20191009. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191009.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-14 00:08:10 +02:00
Ludovic Courtès efa8fddabe
gnu: commencement: Use 'package-with-explicit-inputs' for Hurd packages. 
* gnu/packages/commencement.scm (with-boot0): New procedure.
(gnumach-headers-boot0, mig-boot0)
(hurd-headers-boot0, hurd-minimal-boot0)
(hurd-core-headers-boot0): Use it instead of 'package-with-explicit-inputs'.
 2019-10-14 00:08:10 +02:00
Ludovic Courtès 8f417ed280
gnu: commencement: Further optimize the package object graph. 
For a package like:

  (define-public xxx
    (package
      (inherit (@ (gnu packages base) coreutils))
      (name "xxx")
      (inputs (@ (gnu packages commencement) %final-inputs))
      (native-inputs '())
      (propagated-inputs '())
      (arguments '(#:implicit-inputs? #f))))

this reduces the package object graph from 176 nodes (1852 edges) to 113
nodes (1114 edges).

The number of 'add-data-to-store' calls in "guix build coreutils -nd"
drops from 2045 to 1301, and the number of memoization tables drops from
102 to 40.

"guix build libreoffice -nd" goes from 2.40s to 2.27s.

* gnu/packages/commencement.scm (with-boot4): New variable.
(guile-final, glibc-utf8-locales-final): Use it.
(with-boot4, with-boot5): New variable.
(gnu-make-final): Rewrite to avoid 'package-with-explicit-inputs'.
(coreutils-final): Use 'with-boot5' instead of
'package-with-explicit-inputs'.
(grep-final): Likewise.
(with-boot6): New variable.
(sed-final, %final-inputs): Use it.
 2019-10-14 00:08:10 +02:00
Marius Bakke 64855281c1
gnu: librsvg: Update to 2.46.0. 
* gnu/packages/gnome.scm (librsvg-next): Update to 2.46.0.
[arguments]: Patch SHELL in "po/Makefile.in.in".
[native-inputs]: Replace RUST-1.27 with RUST-1.34.
 2019-10-13 22:49:16 +02:00
Marius Bakke e436379c94
gnu: expat: Replace with 2.2.9 [fixes CVE-2019-15903]. 
* gnu/packages/xml.scm (expat-2.2.9): New variable.
(expat)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke 24496210ea
gnu: libgcrypt: Replace with 1.8.5 [fixes CVE-2019-13627]. 
* gnu/packages/gnupg.scm (libgcrypt-1.8.5): New variable.
(libgcrypt)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke 046915dead
gnu: curl: Replace with 7.66.0 [fixes CVE-2019-5481, CVE-2019-5482]. 
* gnu/packages/curl.scm (curl-7.66.0): New variable.
(curl)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke cb867883ea
gnu: nghttp2: Replace with 1.39.2 [fixes CVE-2019-9511, CVE-2019-9513]. 
* gnu/packages/web.scm (nghttp2-1.39.2): New variable.
(nghttp2)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke d6718086f8
gnu: OpenSSL@1.0: Replace with 1.0.2t [fixes CVE-2019-1547, CVE-2019-1563]. 
* gnu/packages/tls.scm (openssl-1.0.2t): New variable.
(openssl-1.0)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Oleg Pykhalov 0475c88d6f
gnu: Add emacs-forge. 
* gnu/packages/emacs-xyz.scm (emacs-forge): New variable.
 2019-10-13 22:29:42 +03:00
Oleg Pykhalov 735a972eae
gnu: emacs-closql: Update to 1.0.0-1.70b98db. 
* gnu/packages/emacs-xyz.scm (emacs-closql): Update to 1.0.0-1.70b98db.
 2019-10-13 22:29:42 +03:00
Brian Leung 2485f17256
gnu: emacs-ghub: Update to 3.2.0-1.cf0b13a. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0-1.cf0b13a.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-10-13 22:29:42 +03:00
Oleg Pykhalov fd82f7ae9b
gnu: emacs-magit: Update to 2.90.1-2.c761d28. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 2.90.1-2.c761d28.
[arguments]: Add patch phase.
 2019-10-13 22:29:41 +03:00
Marius Bakke c2734ff809
gnu: ao: Update to 1.2.2-5-g20dc8ed [fixes CVE-2017-11548]. 
* gnu/packages/xiph.scm (ao): Update to 1.2.2-5-g20dc8ed.
[source]: Switch to GIT-FETCH.
[native-inputs]: Add AUTOCONF, AUTOMAKE and LIBTOOL.
 2019-10-13 18:35:59 +02:00
Marius Bakke c7adcb7cf8
gnu: ao: Specify CPE name. 
* gnu/packages/xiph.scm (ao)[properties]: New field.
 2019-10-13 18:35:59 +02:00
Marius Bakke 068d0a1c34
gnu: tcl: Update home page. 
* gnu/packages/tcl.scm (tcl)[home-page]: Use HTTPS.
 2019-10-13 18:35:59 +02:00
Marius Bakke a4a70cc4d7
gnu: util-linux: Adjust indentation. 
* gnu/packages/linux.scm (util-linux): Re-indent.
 2019-10-13 18:35:58 +02:00
Eric Bavier 0163b9002a
gnu: Add pragha. 
* gnu/packages/music.scm (pragha): New variable.
 2019-10-13 11:08:56 -05:00
Pierre Langlois 55af645605
gnu: easytag: Fix mp3 support. 
* gnu/packages/music.scm (easytag)[arguments]: Add 'Name', 'Description' and
'Version' entries to temporary id3tag.pc pkg-config file.  Terminate phases
with #t.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-10-13 13:09:02 +02:00
Pierre Langlois b5f6700fb4
gnu: id3lib: Apply patch for UTF16 writing bug. 
* gnu/packages/patches/id3lib-UTF16-writing-bug.patch: New file.
* gnu/packages/mp3.scm (id3lib)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-10-13 13:07:44 +02:00
Marius Bakke bd321df37a
gnu: parted: End phases on #t. 
* gnu/packages/disk.scm (parted)[arguments]: End phase on #t and reindent.
 2019-10-13 12:53:44 +02:00
Marius Bakke 20e0157333
gnu: parted: Complete the 3.3 update. 
Fixes <https://bugs.gnu.org/37721>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

This is a follow-up to commit 6ad7e3578b.

* gnu/packages/patches/parted-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (parted)[source](patches): Remove.
[native-inputs]: Add E2FSPROGS.
 2019-10-13 12:53:44 +02:00
Pierre Neidhardt b51c402f23
gnu: Add emacs-sly-asdf. 
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): New variable.
 2019-10-13 12:49:25 +02:00
Pierre Neidhardt 4dfb02690d
gnu: Add emacs-sly-quicklisp. 
* gnu/packages/emacs-xyz.scm (emacs-sly-quicklisp): New variable.
 2019-10-13 12:49:25 +02:00
Pierre Neidhardt e60e1cb244
gnu: emacs-sly: Update to 20191003. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20191003.
[native-inputs]: Add texinfo to build doc.
[arguments]: Include "contrib" and "slink" folders so that SLY can start.
Add "install-doc" phase.
 2019-10-13 12:49:25 +02:00
Tobias Geerinckx-Rice 5497d68257
gnu: shotwell: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (shotwell)[source]: Hard-code NAME.
 2019-10-12 22:16:07 +02:00
Tobias Geerinckx-Rice a1c6fb52f7
gnu: shotwell: Update to 0.30.7. 
* gnu/packages/gnome.scm (shotwell): Update to 0.30.7.
 2019-10-12 22:16:07 +02:00
Tobias Geerinckx-Rice 54b74cc668
gnu: eog-plugins: Update to 3.26.4. 
* gnu/packages/gnome.scm (eog-plugins): Update to 3.26.4.
 2019-10-12 22:16:07 +02:00
Tobias Geerinckx-Rice 6ad7e3578b
gnu: parted: Update to 3.3. 
* gnu/packages/disk.scm (parted): Update to 3.3.
 2019-10-12 22:16:07 +02:00
Marius Bakke 93ae28c029
gnu: e2fsprogs: Update to 1.45.4 [fixes CVE-2019-5094]. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.45.4.
 2019-10-12 21:44:26 +02:00
Efraim Flashner bc0873ef33
gnu: efl: Update to 1.23.1. 
* gnu/packages/enlightenment.scm (efl): Update to 1.23.1.
 2019-10-12 21:10:28 +03:00
Marius Bakke 9f294736b2
gnu: python-jupyter-kernel-test: Use PYTHON-VERSION. 
* gnu/packages/jupyter.scm (python-jupyter-kernel-test)[arguments]: Use
PYTHON-VERSION to determite Python version.
 2019-10-12 18:39:58 +02:00
Marius Bakke ff97c86295
gnu: json-modern-cxx: Update to 3.7.0. 
* gnu/packages/cpp.scm (json-modern-cxx): Update to 3.7.0.
[source](snippet): Adjust for new doctest requirement.
[native-inputs]: Add DOCTEST.
[inputs]: Remove CATCH-FRAMEWORK2.
 2019-10-12 18:39:58 +02:00
Marius Bakke e14d8dcff3
gnu: Add doctest. 
* gnu/packages/check.scm (doctest): New public variable.
 2019-10-12 18:39:58 +02:00
Marius Bakke 196e35794c
gnu: twolame: Update to 0.4.0. 
* gnu/packages/audio.scm (twolame): Update to 0.4.0.
[source](snippet): Remove.
 2019-10-12 18:39:58 +02:00
Marius Bakke 72e7cba286
gnu: kodi: Update to 18.4. 
* gnu/packages/kodi.scm (kodi): Update to 18.4.
 2019-10-12 18:39:57 +02:00
Marius Bakke fa0f774b26
gnu: python-django: Update to 1.11.25 [security fixes]. 
* gnu/packages/django.scm (python-django): Update to 1.11.25.
 2019-10-12 18:39:57 +02:00
Marius Bakke 0effc65cc9
gnu: gRPC: Update description. 
* gnu/packages/machine-learning.scm (grpc)[description]: Remove "open source".
 2019-10-12 18:39:57 +02:00
Marius Bakke bd2bd80df8
gnu: FANN: Update description. 
* gnu/packages/machine-learning.scm (fann)[description]: Remove "open source".
 2019-10-12 18:39:56 +02:00
Marius Bakke 37e47aa73d
gnu: arx-libertatis: Update description. 
* gnu/packages/games.scm (arx-libertatis)[description]: Remove "open source".
 2019-10-12 18:39:56 +02:00
Marius Bakke ecfc86a21d
gnu: BOINC: Add a source file name. 
While at it, future-proof the URL as well.

* gnu/packages/distributed.scm (boinc-client)[source](file-name): New field.
 2019-10-12 18:39:56 +02:00
Marius Bakke c21dae9b89
gnu: BOINC: Update license. 
* gnu/packages/distributed.scm (boinc-client)[license]: Add LGPL3+.
 2019-10-12 18:39:56 +02:00
Marius Bakke d72bfe075c
gnu: BOINC: Remove redundant comment. 
* gnu/packages/distributed.scm (boinc-client)[description]: Don't mention
license terms.
 2019-10-12 18:39:55 +02:00
wednesday 5ce153b110
gnu: emacs: Add mailutils to inputs. 
* gnu/packages/emacs.scm (emacs)[inputs]: Add mailutils.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-10-12 16:29:50 +02:00
Tobias Geerinckx-Rice c6a99354f3
gnu: mailutils: Update to 3.7. 
* gnu/packages/mail.scm (mailutils): Update to 3.7.
 2019-10-12 16:29:50 +02:00
Tobias Geerinckx-Rice bf92ba6b7b
gnu: amtk: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (amtk)[source]: Hard-code NAME.
 2019-10-12 16:29:49 +02:00
Tobias Geerinckx-Rice 09c4e43f81
gnu: amtk: Update to 5.0.1. 
* gnu/packages/gnome.scm (amtk): Update to 5.0.1.
 2019-10-12 16:29:49 +02:00
Tobias Geerinckx-Rice bae08e22dc
gnu: lightning: Update to 2.1.3. 
* gnu/packages/assembly.scm (lightning): Update to 2.1.3.
 2019-10-12 16:29:49 +02:00
Reza Alizadeh Majd 748ca12f97
gnu: Add uchardet. 
* gnu/packages/freedesktop.scm (uchardet): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-12 15:18:26 +02:00
Sergei Trofimovich e4892ae367
gnu: re2c: Update to 1.2.1. 
* gnu/packages/re2c.scm (re2c): Update to 1.2.1.

Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-12 15:18:26 +02:00
Ludovic Courtès dab669e075
gnu: ld-wrapper: Memoize. 
The command:

  guix graph -e '(@@ (gnu packages commencement) coreutils-final)'

now shows 93 nodes (992 edges) instead of 176 nodes (1241 edges).

* gnu/packages/commencement.scm (ld-wrapper-boot0): Use 'mlambda'
instead of 'lambda'.
(ld-wrapper-boot3): Likewise.
 2019-10-12 15:18:25 +02:00
Ludovic Courtès 099dbc4fd3
gnu: Improve memoization of 'package-with-bootstrap-guile'. 
Before that, the command:

  GUIX_PROFILING=memoization guix build -e '(@@ (gnu packages commencement) gnu-make-final)' -nd

would show that 'package-with-bootstrap-guile' was called 2256
times (hit rate: 89%).  Now, it is called 745 times (hit rate: 85%).

"guix build libreoffice -nd" goes from 2.60s to 2.40s (-8%).

* gnu/packages/commencement.scm (gnu-make-final)
(coreutils-final, grep-final, sed-final, %final-inputs): Call
'package-with-bootstrap-guile' before 'package-with-explicit-inputs'.
 2019-10-12 15:18:25 +02:00
Jesse Gibbons d7e29a2b26
gnu: python-scikit-learn: Update to 0.20.4. 
Fixes <https://bugs.gnu.org/37705>.

* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.4.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-10-12 13:33:33 +02:00
Ludovic Courtès 81a4ca08f7
gnu: mescc-tools: Use 'git-fetch'. 
* gnu/packages/mes.scm (mescc-tools-0.5.2)[source]: Use 'git-fetch'.
(mescc-tools)[source]: Likewise.
 2019-10-12 12:25:08 +02:00
Ludovic Courtès 99b73d0f0c
gnu: commencement: Reduce the graph of package objects. 
The graph returned by:

  guix graph -e '(@@ (gnu packages commencement) guile-final)'

now contains 94 nodes (664 edges) instead of 394 (2674 edges).

Likewise, this command:

  GUIX_PROFILING=add-data-to-store-cache guix build coreutils -nd

shows that the number of lookups to the 'add-data-to-store' caches goes
from 8935 to 5303.

Overall, "guix build libreoffice -nd" goes from 3.17s to 2.60s (-18%).

* gnu/packages/commencement.scm (diffutils-boot0): Remove call to
'package-with-bootstrap-guile' and 'package-with-explicit-inputs', and
adjust accordingly.
(findutils-boot0, file-boot0, binutils-boot0, libstdc++-boot0)
(gcc-boot0, perl-boot0, m4-boot0, bison-boot0, flex-boot0)
(linux-libre-headers-boot0, texinfo-boot0, python-boot0)
(ld-wrapper-boot0, glibc-final-with-bootstrap-bash)
(static-bash-for-glibc, gettext-boot0, glibc-final, binutils-final)
(libstdc++, zlib-final, bash-final): Likewise.
(expat-sans-tests)[inputs]: New field.
[arguments]: Add #:implicit-inputs? and #:guile.
(m4-boot0*): New variable.
 2019-10-12 12:25:08 +02:00
Ludovic Courtès 9a45a24f7f
gnu: Remove unnecessary uses of 'package-with-bootstrap-guile'. 
This reduces the object graph returned by:

  guix graph -e '(@@ (gnu packages commencement) glibc-final-with-bootstrap-bash)

from 333 nodes (1542 edges) to 148 nodes (886 edges).

This improves 'package-derivation' memoization and, consequently, the
'add-data-to-store' cache shown by:

  GUIX_PROFILING=add-data-to-store-cache guix build coreutils -nd

goes from 10948 lookups to 8935 lookups.

* gnu/packages/commencement.scm (mes-boot): Remove call to
'package-with-bootstrap-guile'.  Call 'bootstrap-origin' on the source
of NYACC-0.86.
(tcc-boot0): Likewise.
(tcc-boot): Remove call to 'package-with-bootstrap-guile' and call
'bootstrap-origin' on its source.
(make-mesboot0): Remove call to 'package-with-bootstrap-guile'.
(diffutils-mesboot): Likewise.
(binutils-mesboot0): Likewise, and call 'bootstrap-origin' for its
source.
(gcc-core-mesboot): Likewise.
(mesboot-headers): Remove call to 'package-with-bootstrap-guile'.
(glibc-mesboot0): Likewise, and call 'bootstrap-origin' for its source.
(gcc-mesboot0): Remove call to 'package-with-bootstrap-guile'.
(binutils-mesboot): Likewise.
(make-mesboot): Likewise.
(gcc-mesboot1): Likewise, and call 'bootstrap-origin' for its source.
(gcc-mesboot1-wrapper): Remove call to 'package-with-bootstrap-guile'.
(glibc-headers-mesboot): Likewise, and call 'bootstrap-origin' for its
source.
(glibc-mesboot): Remove call to 'package-with-bootstrap-guile'.
(gcc-mesboot): Likewise, and call to 'bootstrap-origin' for its source.
(gcc-mesboot-wrapper): Remove call to 'package-with-bootstrap-guile'.
(m4-mesboot): Likewise.
(gnu-make-boot0): Likewise, and call 'bootstrap-origin' for its source.
 2019-10-12 12:25:08 +02:00
Pierre Neidhardt 5b811ddc67
gnu: emacs-wgrep: Update to 2.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-wgrep): Update to 2.3.1.
 2019-10-12 12:13:46 +02:00
Leo Famulari be6f2f5634
gnu: PyJWT: Update to 1.7.1. 
* gnu/packages/python-xyz.scm (python-pyjwt): Update to 1.7.1.
 2019-10-11 12:23:42 -04:00
Carl Dong a7d03e96b6
gnu: Fix typo for nsis. 
* gnu/packages/installers.scm (make-nsis): Add space between define and
open bracket.
 2019-10-11 11:46:03 -04:00
Carl Dong e214a22007
gnu: Add nsis-x86_64 and nsis-i686. 
* guix/build-system/scons.scm (scons-build): Add build-targets and
install-targets parameters.
* guix/build/scons-build-system.scm (build, install): Adjust
accordingly.
* doc/guix.texi (Build Systems): Document it.
* gnu/packages/installers.scm: New file,
(make-nsis): New procedure,
(nsis-x86_64, nsis-i686): New variables.
* gnu/packages/patches/nsis-env-passthru.patch: New file.
* gnu/local.mk (dist_patch_DATA, GNU_SYSTEM_MODULES): Adjust
accordingly.
 2019-10-11 11:44:44 -04:00
Tobias Geerinckx-Rice 07bec45dd3
gnu: knot: Update to 2.9.0. 
* gnu/packages/dns.scm (knot): Update to 2.9.0.
 2019-10-11 15:55:40 +02:00
Brian Leung ecf3a3ac9b
gnu: emacs-evil-collection: Update to 0.0.3-11.bf2400a. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.3-11.bf2400a.
 2019-10-11 06:57:44 +02:00
Brian Leung 5b9b1c6b72
gnu: Add emacs-annalist. 
* gnu/packages/emacs-xyz.scm (emacs-annalist): New variable.
 2019-10-11 05:13:42 +02:00
Brian Leung 46274d8987
gnu: emacs-git-annex: Update to 1.1-2.1324d3f. 
* gnu/packages/emacs-xyz.scm (emacs-git-annex): Update to 1.1-2.1324d3f.
 2019-10-11 05:13:42 +02:00
Brian Leung f7b3d9104e
gnu: emacs-helm-org-ql: Remove patch file. 
* gnu/local.mk (emacs-helm-org-ql): Remove entry.
* gnu/packages/emacs-xyz.scm: Remove patch file.
* gnu/packages/patches/emacs-helm-org-ql.patch: Delete file.
 2019-10-11 05:13:41 +02:00
Brian Leung 8f1471149f
gnu: emacs-racket-mode: Update to 0.0.2-4.2a9a102. 
* gnu/packages/emacs-xyz.scm (emacs-racket-mode): Update to 0.0.2-4.2a9a102.
 2019-10-11 05:13:41 +02:00
Brian Leung 3fcdd99f71
gnu: emacs-rspec: Update to 1.11-1.66ea7cc. 
* gnu/packages/emacs-xyz.scm (emacs-rspec): Update to 1.11-1.66ea7cc.
 2019-10-11 05:13:41 +02:00
Leo Famulari 666f51f9e1
gnu: apfs-fuse: Fix build. 
* gnu/packages/file-systems.scm (apfs-fuse)[arguments]: Install the LICENSE file
with the default 'install-license-files' phase.
 2019-10-10 19:01:03 -04:00
Marius Bakke ff0efc8f6c
gnu: python-bleach: Update to 3.1.0. 
* gnu/packages/check.scm (python-pytest-runner-2, python2-pytest-runner-2):
New public variables.
* gnu/packages/python-xyz.scm (python-bleach): Update to 3.1.0.
[propagated-inputs]: Remove PYTHON-HTML5LIB-0.9.  Add PYTHON-WEBENCODINGS.
[native-inputs]: Remove PYTHON-NOSE.  Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER-2.
 2019-10-10 20:09:56 +02:00
Marius Bakke ef42bc3e56
gnu: fluidsynth: Update to 2.0.7. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.7.
 2019-10-10 20:09:56 +02:00
Marius Bakke 3f7a3ea890
gnu: tbb: Update to 2019_U9. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U9.
 2019-10-10 20:09:56 +02:00
Marius Bakke d253719300
gnu: whois: Update to 5.5.2. 
* gnu/packages/networking.scm (whois): Update to 5.5.2.
 2019-10-10 20:09:56 +02:00
Marius Bakke d519bc1350
gnu: appstream-glib: Update to 0.7.16. 
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.16.
 2019-10-10 20:09:55 +02:00
Marius Bakke d1eb423478
gnu: strace: Update to 5.3. 
* gnu/packages/patches/strace-ipc-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (strace): Update to 5.3.
[source](patches): Remove.
[arguments]: Remove obsolete phase.
 2019-10-10 20:09:55 +02:00
Marius Bakke f8026a797c
gnu: libsoup: Update to 2.68.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.68.2.
[arguments]: Update #:configure-flags.  Skip tests that attempts to resolve
"subdomain.localhost".
[propagated-inputs]: Add GOOGLE-BROTLI and ZLIB.
 2019-10-10 20:09:55 +02:00
Marius Bakke 2d821e4c7f
gnu: guix: Fix source checksum. 
This is a follow-up to commit 6c50e1dc06.

* gnu/packages/package-management.scm (guix)[source](sha256): Update hash.
 2019-10-10 20:07:59 +02:00
Efraim Flashner 2d064a466a
gnu: python-efl: Update to 1.23.0. 
* gnu/packages/enlightenment.scm (python-efl): Update to 1.23.0.
 2019-10-10 20:49:10 +03:00
Danny Milosavljevic 423c680d87
gnu: mate-utils: Build with a fixed version of yelp-tools. 
* gnu/packages/mate.scm (mate-utils)[native-inputs]: Replace YELP-TOOLS with
YELP-TOOLS/FIXED.
 2019-10-10 18:48:08 +02:00
Diego Nicola Barbato e3887d0666
gnu: emacs-org-tree-slide: Update to 2.8.14. 
* gnu/packages/emacs-xyz.scm (emacs-org-tree-slide): Update to 2.8.14.
 2019-10-10 18:00:08 +02:00
Ludovic Courtès 6c50e1dc06
gnu: guix: Update to fc1fe72. 
* gnu/packages/package-management.scm (guix): Update to fc1fe72.
 2019-10-10 17:26:53 +02:00
Ludovic Courtès 94d2ff6d9c
gnu: guix: Intern bootstrap executables before running tests. 
This is a followup to 1ba0b1e6ec.

* gnu/packages/package-management.scm (guix)[arguments]: In
'copy-bootstrap-guile', copy the bootstrap executables.
[inputs]: Add "bootstrap/{bash,mkdir,tar,xz}".
 2019-10-10 17:25:21 +02:00
Ludovic Courtès d3650775e0
gnu: guix-jupyter: Avoid 'specification->package'. 
* gnu/packages/package-management.scm (guix-jupyter)[native-inputs]:
Avoid 'specification->package'.
 2019-10-10 17:24:21 +02:00
Ludovic Courtès 8f02e5ac81
gnu: openmpi: Update to 4.0.2. 
* gnu/packages/mpi.scm (openmpi): Update to 4.0.2.
 2019-10-10 17:23:52 +02:00
Ludovic Courtès fc1fe722a0
gnu: Add Guix-Jupyter. 
* gnu/packages/package-management.scm (guix-jupyter): New variable.
 2019-10-10 11:21:37 +02:00
Ludovic Courtès 03d28531fd
gnu: gcc@9: Update to 9.2.0. 
* gnu/packages/gcc.scm (gcc-9): Update to 9.2.0.
 2019-10-10 11:21:37 +02:00
Danny Milosavljevic ee623903b1
gnu: python-binaryornot: Fix typo. 
Follow-up to 86723f98ab.

* gnu/packages/python-xyz.scm (python-binaryornot)[arguments]<#:phases>[patch-test]:
Rename to...
[patch-test]: ...this.
 2019-10-10 11:04:14 +02:00
Brian Leung 0091853199
gnu: emacs-org-ql: Patch for Helm users. 
The package has a Helm component that is missing the relevant `require` statements.
* gnu/packages/patches/emacs-helm-org-ql.patch: Add.
* gnu/local.mk (emacs-helm-org-ql): Add entry.
* gnu/packages/emacs-xyz.scm: Update and add dependencies.
 2019-10-10 07:01:30 +02:00
Brian Leung c2acf8f32b
gnu: emacs-gif-screencast: Update to 1.0-2.248d1e1. 
* gnu/packages/emacs-xyz.scm (emacs-gif-screencast): Update to 1.0-2.248d1e1.
 2019-10-10 06:50:29 +02:00
Brian Leung aa694009c7
gnu: emacs-org-ql: Update to 0.3.1-2.949a06c. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.3.1-2.949a06c.
 2019-10-10 02:22:25 +02:00
Brian Leung 8ff62eeb95
gnu: emacs-org-sidebar: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-sidebar): Update to 0.2.
 2019-10-09 22:35:53 +02:00
Brian Leung 7a268eadbe
gnu: emacs-org-ql: Update to 0.3-1.af0ef30. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.3-1.af0ef30.
 2019-10-09 22:35:53 +02:00
Brian Leung ca19d88d0a
gnu: emacs-org-super-agenda: Update to 1.1.1-3.a87ca11. 
* gnu/packages/emacs-xyz.scm (emacs-org-super-agenda): Update to 1.1.1-3.a87ca11.
 2019-10-09 22:29:41 +02:00
Marius Bakke 03f0b5e2c6
gnu: wesnoth: Update to 1.14.9. 
Fixes a build failure reported by reepca on #guix.

* gnu/packages/games.scm (wesnoth): Update to 1.14.9.
[arguments]: Add phase to disable compiler warnings from Boost headers.
 2019-10-09 21:54:57 +02:00
Maxim Cournoyer 7f486d25d2
gnu: vinagre: Fix build. 
* gnu/packages/gnome.scm (vinagre): Set the '--enable-compile-warnings'
configure flag to 'minimum', to prevent build failures on compilation
warnings.
 2019-10-10 04:41:13 +09:00
Joseph LaFreniere 081fe5ca97
gnu: Add emacs-ssh-agency. 
* gnu/packages/emacs-xyz.scm (emacs-ssh-agency): New variable.
 2019-10-09 21:11:07 +02:00
Brian Leung dc3cd70d20
gnu: emacs-deft: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-deft)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2019-10-09 21:11:07 +02:00
Brian Leung dc6a1a8b48
gnu: emacs-emmet-mode: Update to 1.0.8-1.1acb821. 
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode): Update to 1.0.8-1.1acb821.
 2019-10-09 21:11:07 +02:00
Tobias Geerinckx-Rice 8325e1f8c4
gnu: fcgiwrap: Fix build with newer GCCs. 
* gnu/packages/web.scm (fcgiwrap)[arguments]: Add ‘fix-CFLAGS’ phase.
 2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice e65bbec98f
gnu: perl-mail-dkim: Update to 0.57. 
* gnu/packages/mail.scm (perl-mail-dkim): Update to 0.57.
 2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice 9cd100b659
gnu: python-ecdsa: Update to 0.13.3. 
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.13.3.
 2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice 1329910511
gnu: opensm: Update to 3.3.22. 
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.22.
 2019-10-09 19:21:05 +02:00
Marius Bakke 636037fd0a
gnu: espeak: Build with the C++ 98 standard. 
Fixes <https://bugs.gnu.org/37672>.
Reported by Bradley Haggerty <bradigger@gmail.com>.

* gnu/packages/speech.scm (espeak)[arguments]: Add CXXFLAGS to #:make-flags.
 2019-10-09 19:09:42 +02:00
Marius Bakke e0dcd84d51
gnu: libsigc++: Update home page. 
* gnu/packages/glib.scm (libsigc++)[home-page]: Update to current.
 2019-10-09 19:09:41 +02:00
Danny Milosavljevic 86723f98ab
gnu: python-binaryornot: Fix build. 
Fixes <https://bugs.gnu.org/37678>.

* gnu/packages/python-xyz.scm (python-binaryornot)[arguments]<#:phases>[patch-tests]:
New phase.
 2019-10-09 15:59:52 +02:00
Brian Leung 3cb2d1a556
gnu: emacs-tiny: Update to 0.2.1-1.fd8a6b0. 
* gnu/packages/emacs-xyz.scm (emacs-tiny): Update to 0.2.1-1.fd8a6b0.
 2019-10-09 08:10:03 +02:00
Brian Leung 525ef21ba0
gnu: emacs-general: Update to 0-3.f38fb22. 
* gnu/packages/emacs-xyz.scm (emacs-general): Update to 0-3.f38fb22.
 2019-10-09 04:26:57 +02:00
Brian Leung 4928a37624
gnu: emacs-ccls: Update to 0.1-3.b1acc33. 
* gnu/packages/emacs-xyz.scm (emacs-ccls): Update to 0.1-3.b1acc33.
 2019-10-09 03:53:24 +02:00
Brian Leung 9887fc7512
gnu: emacs-dante: Update to 1.5-3.38b5894. 
* gnu/packages/emacs-xyz.scm (emacs-dante): Update to 1.5-3.38b5894.
 2019-10-09 03:31:30 +02:00
Jan Nieuwenhuizen 185152e39e
gnu: mcrl2: Update source url. 
* gnu/packages/maths.scm (mcrl2): Update source url.
 2019-10-08 23:25:51 +02:00
Pierre Langlois f875d76f16
gnu: python2-tqdm: Depend on python2-functools32. 
* gnu/packages/python-xyz.scm (python-tqdm)[properties]: Add python2-variant.
(python2-tqdm): Use 'strip-python2-variant'.
[native-inputs]: Add python2-functools32.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-10-08 23:07:27 +02:00
Pierre Langlois d28c113f6b
gnu: gpodder: Update to 3.10.11. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.11.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-10-08 23:07:09 +02:00
Pierre Langlois 9d282fb163
gnu: sakura: Update to 3.7.0. 
* gnu/packages/terminals.scm (sakura): Update to 3.7.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-10-08 23:06:31 +02:00
Marius Bakke 4ed041d901
gnu: mate-applets: Build with a fixed version of yelp-tools. 
Fixes <https://bugs.gnu.org/37668>.
Reported by Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl>.

* gnu/packages/gnome.scm (yelp-tools/fixed): New public variable.
* gnu/packages/mate.scm (mate-applets)[native-inputs]: Replace YELP-TOOLS with
YELP-TOOLS/FIXED.
 2019-10-08 22:04:12 +02:00
Marius Bakke 861907f01e
gnu: linux-libre@5.3: Apply upstream entropy fix. 
See <https://bugs.gnu.org/37501>.

* gnu/packages/linux.scm (linux-libre-5.3-source): Add
"linux-libre-active-entropy.patch".
 2019-10-08 13:14:16 +02:00
Ludovic Courtès cf3d1763ed
Merge branch 'core-updates' 2019-10-08 11:37:07 +02:00
Marius Bakke 2fa55c7247
gnu: mariadb: Build with GCC 5 on ARMv7. 
Fixes <https://bugs.gnu.org/37605>.

* gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the
current system is ARMv7.
 2019-10-08 10:16:04 +02:00
Pierre Neidhardt d57660c549
gnu: Add serapeum. 
* gnu/packages/lisp.scm (cl-serapeum, ecl-serapeum, sbcl-serapeum): New variables.
 2019-10-08 10:06:07 +02:00
Christopher Baines a1c1943b7c
gnu: Add unknown-horizons. 
* gnu/packages/games.scm (unknown-horizons): New variable.
 2019-10-08 08:31:55 +01:00
Christopher Baines 2372a5f92e
gnu: Add fifengine. 
* gnu/packcages/games.scm (fifengine): New variable.
 2019-10-08 08:28:36 +01:00
Christopher Baines ce94fcfd6e
gnu: Add fifechan. 
* gnu/packages/games.scm (fifechan): New variable.
 2019-10-08 08:28:35 +01:00
Tobias Geerinckx-Rice d7a6a3f328
gnu: linux-libre@4.14: Update to 4.14.147. 
* gnu/packages/linux.scm (deblob-scripts-4.14)
(linux-libre-4.14-version, linux-libre-4.14-pristine-source):
Update to 4.14.147.
 2019-10-08 05:29:31 +02:00
Tobias Geerinckx-Rice a48f08bc81
gnu: linux-libre@4.9: Update to 4.9.195. 
* gnu/packages/linux.scm (deblob-scripts-4.9)
(linux-libre-4.9-version, linux-libre-4.9-pristine-source):
Update to 4.9.195.
 2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice ddefa2ff5c
gnu: linux-libre@4.19: Update to 4.19.77. 
* gnu/packages/linux.scm (deblob-scripts-4.19)
(linux-libre-4.19-version, linux-libre-4.19-pristine-source):
Update to 4.19.77.
 2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice c26b1d43fa
gnu: linux-libre@5.2: Update to 5.2.19. 
* gnu/packages/linux.scm (deblob-scripts-5.2)
(linux-libre-5.2-version, linux-libre-5.2-pristine-source):
Update to 5.2.19.
 2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 24268ec418
gnu: coin3D: Use a specific changeset. 
* gnu/packages/graphics.scm (coin3D)[source]: Use HG-FETCH and…
GIT-FILE-NAME.
 2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 9be266116b
gnu: me-cleaner: Update to 1.2. 
* gnu/packages/flashing-tools.scm (me-cleaner): Update to 1.2.
[arguments]: Remove ‘create-setup.py’ phase.  Add ‘install-documentation’ phase.
 2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 2608d3ea5b
gnu: perl-async-interrupt: Update to 1.25. 
* gnu/packages/perl.scm (perl-async-interrupt): Update to 1.25.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0be9038c95
gnu: maxflow: Use HTTPS home page. 
* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice bdc63012d1
gnu: licensecheck: Update to 3.0.37. 
* gnu/packages/license.scm (licensecheck): Update to 3.0.37.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice aa714a06db
gnu: perl-regexp-pattern-license: Update to 3.1.94. 
* gnu/packages/license.scm (perl-regexp-pattern-license): Update to 3.1.94.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 1c8d6d6d7a
gnu: qucs-s: Update to 0.0.21. 
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.21.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0af12a1367
gnu: maxflow: Correct version to 3.0.5. 
This won't be picked up by ‘guix package -u’, but the code is identical
anyway.  By changing this now, fewer installations will fail to upgrade
at all if upstream ever release a new <3.4.

* gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5.
[source]: Use version tag instead of raw matching commit.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 2dc0a6cf36
gnu: maxflow: Use GIT-FILE-NAME. 
* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
 2019-10-08 05:29:28 +02:00
Tobias Geerinckx-Rice 248f218e44
gnu: lynis: Update to 2.7.5. 
* gnu/packages/admin.scm (lynis): Update to 2.7.5.
 2019-10-08 05:29:28 +02:00
Eric Bavier edaa616736
gnu: ncmpc: Fix manual install. 
The default manual installation directory was fixed upstream in version 0.34.

* gnu/packages/mpd.scm (ncmpc)[arguments]: Remove #:configure-flags.
 2019-10-07 19:51:08 -05:00
Arun Isaac 4cced9895e
gnu: emacs-linum-relative: Update to 0.6. 
* gnu/packages/emacs-xyz.scm (emacs-linum-relative): Update to 0.6.
 2019-10-07 21:19:41 +05:30
Ludovic Courtès 4d8d2fbaf3
Merge branch 'master' into core-updates 2019-10-07 17:06:13 +02:00
Ricardo Wurmus fa984fa678
gnu: jack-2: Update to 1.9.13. 
* gnu/packages/audio.scm (jack-2): Update to 1.9.13.
[arguments]: Don't build with python-2.
[inputs]: Replace python2-dbus with python-dbus.
 2019-10-07 16:37:01 +02:00
Pierre Neidhardt fa4bbd9f34
gnu: Add trivial-macroexpand-all. 
* gnu/packages/lisp.scm (cl-trivial-macroexpand-all,
  ecl-trivial-macroexpand-all, sbcl-trivial-macroexpand-all): New variables.
 2019-10-07 13:50:07 +02:00
Pierre Neidhardt c6dd9cf7ff
gnu: Add trivial-file-size. 
* gnu/packages/lisp.scm (cl-trivial-file-size, ecl-trivial-file-size,
  sbcl-trivial-file-size): New variables.
 2019-10-07 13:49:42 +02:00
Pierre Neidhardt 003a714e7e
gnu: Add global-vars. 
* gnu/packages/lisp.scm (cl-global-vars, ecl-global-vars, sbcl-global-vars):
  New variables.
 2019-10-07 13:49:28 +02:00
Pierre Neidhardt 3658db3fd7
gnu: Add string-case. 
* gnu/packages/lisp.scm (cl-string-case, ecl-string-case, sbcl-string-case):
  New variables.
 2019-10-07 13:48:23 +02:00
Pierre Neidhardt 6fdb5b7947
gnu: Add cl-fare-quasiquote-extras. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-extras): New variable.
 2019-10-07 13:48:00 +02:00
Pierre Neidhardt 7b9cb9c01c
gnu: Add cl-fare-quasiquote-readtable. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-readtable): New variable.
 2019-10-07 13:47:46 +02:00
Pierre Neidhardt 06e2da719e
gnu: Add fare-quasiquote-optima. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-optima,
  sbcl-fare-quasiquote-optima): New variables.
 2019-10-07 13:46:55 +02:00
Pierre Neidhardt 7baaf7f358
gnu: Add cl-fare-quasiquote. 
* gnu/packages/lisp.scm (cl-fare-quasiquote): New variable.
 2019-10-07 13:46:36 +02:00
Pierre Neidhardt 85747bab82
gnu: sbcl-optima: Fix version number 
* gnu/packages/lisp.scm (sbcl-optima)[version]: It's actually 1.0.
 2019-10-07 13:45:53 +02:00
Vagrant Cascadian 7d82e92071
gnu: linux-libre: Update to 5.3.4. 
* gnu/packages/linux (linux-libre-5.3-version): Update to 5.3.4.
  (deblob-scripts-5.3): Update to 5.3.4.
 2019-10-07 01:55:46 -07:00
Ludovic Courtès 048d21a873
gnu: icedtea-7: Avoid massive rebuild. 
Reported by Efraim Flashner.

* gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path'
definition in 'install-libjvm' to avoid the rebuilds that commit
1b6f99ea53 would otherwise entail.
 2019-10-07 10:44:10 +02:00
Efraim Flashner 7b6a8e23b0
gnu: aria2: Update to 1.35.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0.
[source]: Use new upstream uri. Remove patch.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-10-07 11:37:21 +03:00
Ludovic Courtès d3e22bcc11
gnu: icedtea-7: Support non-Intel systems. 
This is a followup to 1b6f99ea53.

* gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm'
phase, match armhf and aarch64.
[supported-systems]: New field.
 2019-10-07 09:52:31 +02:00
Oleg Pykhalov 4261a9d162
gnu: emacs-mbsync: Update to 0.1.2-4.b62491c. 
* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.
 2019-10-07 10:24:36 +03:00
Brian Leung 4f2a3fbe88
gnu: emacs-evil-nerd-commenter: Update to 3.3.8. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.
 2019-10-07 08:20:50 +02:00
Brian Leung 3f68853557
gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e. 
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.
 2019-10-07 05:15:55 +02:00
Brian Leung 47467ce75a
gnu: Add emacs-peg. 
* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.
 2019-10-07 04:34:59 +02:00
Brian Leung b44271350b
gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1. 
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.
 2019-10-07 01:43:37 +02:00
Ricardo Wurmus 326746e14c
gnu: r-variancepartition: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus eb796f53ef
gnu: r-mixomics: Update to 6.8.5. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 1c2e573302
gnu: r-regioner: Update to 1.16.5. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 07d0645b6b
gnu: r-backports: Update to 1.1.5. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus f817005bfe
gnu: r-gargle: Update to 0.4.0. 
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 9b112f4030
gnu: r-rcppparallel: Update to 4.4.4. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 770321180f
gnu: r-hdf5r: Update to 1.3.0. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 2e6ccd6c2d
gnu: r-promises: Update to 1.1.0. 
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus ab99236eba
gnu: r-later: Update to 1.0.0. 
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus b7e7c320a2
gnu: r-maptools: Update to 0.9-8. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus ff74344597
gnu: r-htmlwidgets: Update to 1.5. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 82acc94fbf
gnu: r-htmltools: Update to 0.4.0. 
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 33651044c6
gnu: r-seurat: Update to 3.1.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 94638cbe77
gnu: r-rsamtools: Update to 2.0.2. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 122c1b3ce7
gnu: r-biomart: Update to 2.40.5. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
 2019-10-06 23:08:46 +02:00
Brian Leung d050fdf4c6
gnu: emacs-helm-ag: Fix version. 
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
 2019-10-06 22:08:27 +02:00
Brian Leung cb2197508a
gnu: Add emacs-helm-org. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
 2019-10-06 22:08:27 +02:00
Brian Leung 45d04b2a7d
gnu: emacs-helm: Update to 3.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
 2019-10-06 22:08:27 +02:00
Ricardo Wurmus 4722330d68
gnu: nss-pam-ldapd: Update to 0.9.11. 
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.
 2019-10-06 22:07:07 +02:00
Ricardo Wurmus e08902d3cb
Merge branch 'master' into core-updates 2019-10-06 22:02:20 +02:00
Ricardo Wurmus f58702465d
gnu: Add mloop. 
* gnu/packages/music.scm (mloop): New variable.
 2019-10-06 22:01:01 +02:00
Ricardo Wurmus 4b94e63db6
gnu: guile-studio: Update to 0-2.4d63f3d. 
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.
 2019-10-06 22:01:01 +02:00
Ricardo Wurmus 1b6f99ea53
gnu: icedtea-7: Fix build on i686-linux. 
* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when
the system is "i686-linux".
 2019-10-06 22:01:01 +02:00
Ricardo Wurmus fc37b4afb2
gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM. 
* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags:
--disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi.
[inputs]: Add libffi.
 2019-10-06 22:01:01 +02:00
Brian Leung ff810d21a5
gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b. 
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.
 2019-10-06 20:40:23 +02:00
Brian Leung 9049f28f57
gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee. 
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.
 2019-10-06 20:18:39 +02:00
Brian Leung 1017ba7dd5
gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86. 
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.
 2019-10-06 19:59:05 +02:00
Pierre Neidhardt cec23736d3
gnu: Add cl-goject-introspection. 
* gnu/packages/lisp.scm (cl-goject-introspection,
  sbcl-cl-gobject-introspection): New variables.
 2019-10-06 19:34:13 +02:00
Marius Bakke 1714edc3d4
gnu: WebKitGTK: Embed absolute file name of libWPEBackend-fdo-1.0.so. 
Fixes <https://bugs.gnu.org/37545>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Add phase.
 2019-10-06 18:02:48 +02:00
Marius Bakke c5ceec4150
gnu: linux-libre: Remove glibc from CPATH before the build. 
Fixes <https://bugs.gnu.org/37593>.

* gnu/packages/linux.scm (make-linux-libre*)[arguments]: Drop "libc" from CPATH.
 2019-10-06 18:02:48 +02:00
Marius Bakke dd69897113
gnu: linux-libre: Try to aggressively gather entropy during boot. 
Fixes <https://bugs.gnu.org/37501>.

* gnu/packages/patches/linux-libre-active-entropy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-5.2-source): Use it.
 2019-10-06 18:02:48 +02:00
Marius Bakke 5157edd885
gnu: perf: Treat kernel headers as system headers. 
* gnu/packages/linux.scm (perf)[arguments]: Instead of disabling -Werror,
set C_INCLUDE_PATH.
 2019-10-06 18:02:48 +02:00
Guillaume Le Vaillant 5a65fede0b
gnu: Add cl-random-forest. 
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): New variables.
 2019-10-06 14:37:54 +02:00
Guillaume Le Vaillant 7a15aab836
gnu: Add cl-online-learning. 
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
  cl-online-learning, ecl-cl-online-learning): New variables.
 2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 6e76087223
gnu: Add cl-libsvm-format. 
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format): New variables.
 2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 2601da0523
gnu: Add cl-store. 
* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New
  variables.
 2019-10-06 14:28:51 +02:00
Guillaume Le Vaillant 7273b3b2a6
gnu: sbcl-hu.dwim.asdf: Update to 20190521. 
* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521.
  [uri]: Fetch more recent version from Quicklisp.
 2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant f65f713846
gnu: sbcl-alexandria: Update to 1.0.0. 
* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0.
  [native-inputs]: Add rt.
 2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant fd0f8860ec
gnu: ecl: Do not compile the deprecated MIT-RT. 
Compiling the rt bundled with ECL prevents the ecl-rt package from compiling
properly, as ECL thinks it has already been compiled.

* gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to
  'configure-flags'.
 2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant d3287fc157
gnu: Add chanl. 
* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables.
 2019-10-06 14:19:03 +02:00
Efraim Flashner d24d980e8e
gnu: Remove rust-clippy. 
This was added by accident in 14f3a7e373.

* gnu/packages/crates-io.scm (rust-clippy): Remove variable.
 2019-10-06 14:38:02 +03:00
Timotej Lazar aa64198492
gnu: endless-sky: Update to 0.9.10. 
* gnu/packages/games.scm (endless-sky): Update to 0.9.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-10-06 11:58:02 +03:00
Giovanni Biscuolo e7f6d13722
gnu: zabbix: Update to 4.2.7. 
* gnu/packages/monitoring.scm: (zabbix) Update to 4.2.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-10-06 11:51:16 +03:00
tlecarrour@easter-eggs.com 1e8826bdd3
gnu: Update python-pastel to 0.1.1. 
* gnu/packages/graphics.scm (python-pastel): Update to 0.1.1.
[arguments]: Add custom 'check phase.
[description]: Simplify description.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-10-06 11:46:21 +03:00
Efraim Flashner 6792908d6d
gnu: waybar: Update to 0.8.0. 
* gnu/packages/wm.scm (waybar): Update to 0.8.0.
 2019-10-06 11:05:27 +03:00
Tobias Geerinckx-Rice 5a54baf67c
gnu: r-data-table: Update to 1.12.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.4.
[inputs]: Add zlib.
 2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice 011ec062f3
gnu: python-mnemonic: Update to 0.19. 
* gnu/packages/finance.scm (python-mnemonic): Update to 0.19.
 2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice ef10cbb41f
gnu: r-gamlss-dist: Update to 5.1-5. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-5.
 2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice ac5e205a3c
gnu: python-traitlets: Update to 4.3.3. 
* gnu/packages/python-xyz.scm (python-traitlets): Update to 4.3.3.
 2019-10-06 04:46:54 +02:00