zimoun
|
9534e7b706
|
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
|
2020-12-29 17:40:28 +01:00 |
|
zimoun
|
2a4322f7c3
|
gnu: r-gviz: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gviz): Move from here...
* gnu/packages/bioconductor.scm (r-gviz): ...to here.
|
2020-12-29 17:40:28 +01:00 |
|
zimoun
|
69a5e066c1
|
gnu: r-gwascat: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
|
2020-12-29 17:40:28 +01:00 |
|
zimoun
|
838db0de5e
|
gnu: r-sushi: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
|
2020-12-29 17:40:25 +01:00 |
Ricardo Wurmus
|
17235ec28c
|
gnu: r-nmf: Move from "annotation" to "package" section.
* gnu/packages/bioconductor.scm (r-nmf): Move variable.
|
2020-12-17 11:41:15 +01:00 |
|
Ricardo Wurmus
|
eb3c105126
|
gnu: r-deconstructsigs: Move from "annotation" to "package" section.
* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
|
2020-12-17 11:40:31 +01:00 |
|
Ricardo Wurmus
|
e7fa79fd91
|
gnu: r-pasilla: Move from "annotation" to "experiment" section.
* gnu/packages/bioconductor.scm (r-pasilla): Move variable.
|
2020-12-17 11:39:51 +01:00 |
|
Ricardo Wurmus
|
cc54848ad0
|
gnu: r-ideoviz: Move from "annotation" to "package" section.
* gnu/packages/bioconductor.scm (r-ideoviz): Move variable.
|
2020-12-17 11:39:06 +01:00 |
|
Ricardo Wurmus
|
e5610fd9f4
|
gnu: r-genelendatabase: Move from "annotation" to "experiment" section.
* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
|
2020-12-17 11:38:24 +01:00 |
|
Ricardo Wurmus
|
30a4bd3bb3
|
gnu: r-bluster: Move from "annotation" to "package" section.
* gnu/packages/bioconductor.scm (r-bluster): Move variable.
|
2020-12-17 11:37:47 +01:00 |
|
Ricardo Wurmus
|
1abb6a2a78
|
gnu: r-cummerbund: Move from "experiment" to "package" section.
* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
|
2020-12-17 11:37:17 +01:00 |
|
Ricardo Wurmus
|
17d95689b4
|
gnu: r-coverageview: Move from "experiment" to "package" section.
* gnu/packages/bioconductor.scm (r-coverageview): Move variable.
|
2020-12-17 11:36:26 +01:00 |
Mădălin Ionel Patrașcu
|
04a0594662
|
gnu: Add r-org-eck12-eg-db.
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-12-17 11:26:53 +01:00 |
|
Mădălin Ionel Patrașcu
|
e4b0794e52
|
gnu: Add r-pathview.
* gnu/packages/bioconductor.scm (r-pathview): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-12-17 11:26:53 +01:00 |
|
Mădălin Ionel Patrașcu
|
7395458d40
|
gnu: Add r-kegggraph.
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
|
2020-12-17 11:26:53 +01:00 |
|
Mădălin Ionel Patrașcu
|
eb2f1a7dd9
|
gnu: Add r-gagedata.
* gnu/packages/bioconductor.scm (r-gagedata): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-12-17 11:26:53 +01:00 |
|
Ricardo Wurmus
|
3872153a2f
|
gnu: r-scuttle: Update to 1.0.3.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
|
2020-12-09 23:30:12 +01:00 |
|
Ricardo Wurmus
|
eed728951c
|
gnu: r-beachmat: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
|
2020-12-09 23:30:12 +01:00 |
|
Ricardo Wurmus
|
589ac42212
|
gnu: r-cicero: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
|
2020-12-09 23:30:12 +01:00 |
|
Ricardo Wurmus
|
7cda2d415f
|
gnu: r-biosigner: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
|
2020-12-09 23:30:12 +01:00 |
|
Ricardo Wurmus
|
4714787793
|
gnu: r-biocneighbors: Update to 1.8.2.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
|
2020-12-09 23:30:12 +01:00 |
|
Ricardo Wurmus
|
ebf11de4e3
|
gnu: r-diffbind: Update to 3.0.8.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
|
2020-12-09 12:12:48 +01:00 |
|
Ricardo Wurmus
|
4617cc7fd5
|
gnu: r-rhtslib: Propagate zlib.
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
|
2020-12-09 12:12:48 +01:00 |
|
Ricardo Wurmus
|
7601015fc9
|
gnu: r-delayedmatrixstats: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
|
2020-12-09 12:12:48 +01:00 |
|
zimoun
|
64f9fb308f
|
gnu: r-bigmelon: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
|
2020-12-09 12:12:48 +01:00 |
|
zimoun
|
9f6e2bfe1f
|
gnu: r-watermelon: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
8db36c1f68
|
gnu: r-yarn: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
adf6edc750
|
gnu: r-quantro: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
4eeaa159d2
|
gnu: r-lumi: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
0b7dd44706
|
gnu: r-methylumi: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
e5a4198bc3
|
gnu: r-minfi: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
45dfb75166
|
gnu: Add r-catalyst.
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
43bf50ecae
|
gnu: r-ggcyto: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
b856a48768
|
gnu: r-scdd: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
3f04b8167b
|
gnu: r-chipcomp: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
1174317e03
|
gnu: r-pcatools: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
b03c955c6f
|
gnu: r-scran: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
|
2020-12-09 12:12:47 +01:00 |
|
zimoun
|
d4b5d18684
|
gnu: r-scater: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
|
2020-12-09 12:12:46 +01:00 |
|
Ricardo Wurmus
|
0e60dda0ae
|
gnu: Add r-scuttle.
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
10c87ecf77
|
gnu: r-delayedmatrixstats: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
4ef898d449
|
gnu: r-singlecellexperiment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
d0db04fcaf
|
gnu: r-yapsa: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
798ec28916
|
gnu: r-biocsingular: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
dd9341ffa3
|
gnu: r-genomicinteractions: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
|
2020-12-09 12:12:46 +01:00 |
|
zimoun
|
35dae95110
|
gnu: r-interactionset: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
|
2020-12-09 12:12:46 +01:00 |
|
Ricardo Wurmus
|
5e719988f2
|
gnu: Add r-sparsematrixstats.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
|
2020-12-09 12:12:46 +01:00 |
Roel Janssen
|
a23310ffc2
|
gnu: Add r-bluster.
* gnu/packages/bioconductor.scm (r-bluster): New variable.
|
2020-12-09 12:12:45 +01:00 |
|
Roel Janssen
|
aca4ebe40a
|
gnu: r-annaffy: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
|
2020-12-09 12:12:45 +01:00 |
|
zimoun
|
16f16b5e21
|
gnu: Add r-msmstests.
* gnu/packages/bioconductor.scm (r-msmstests): New variable.
|
2020-12-09 12:12:43 +01:00 |
|
zimoun
|
e520c68fa9
|
gnu: Add r-msmseda.
* gnu/packages/bioconductor.scm (r-msmseq): New variable.
|
2020-12-09 12:12:43 +01:00 |