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135813 Commits (9a071ad9413672c25f1ebab23d3ea3178186f3d9)

Author SHA1 Message Date
Ricardo Wurmus 9a071ad941
gnu: r-biovizbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.52.0.

Change-Id: I71ac5375c00fadedc44c4f027b236648b3e2a4cd
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 472ed71761
gnu: r-biostrings: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.0.

Change-Id: I7ddcf26e34210dd6065fdd8c937e68f256fee43e
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 065b98f30d
gnu: r-biocparallel: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.38.0.

Change-Id: I943f443a0f6f3182c9f7fd11f57e1bfabb6c04df
2024-05-08 12:53:22 +02:00
Ricardo Wurmus cfddce9f42
gnu: r-biomart: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.0.
[propagated-inputs]: Remove r-httr and r-xml; add r-httr2.

Change-Id: I6460b29e2a4d92be9e4675ddf461f65f79585449
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a1d32a9206
gnu: r-biobase: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.64.0.

Change-Id: I5330e457bbabd007683ed869b539bd38a407df30
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5970c028f0
gnu: r-bamsignals: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.36.0.

Change-Id: I99174b5d88723a8e6606cf067353f2051bab39d1
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 9b11dc5b0b
gnu: r-aroma-light: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.34.0.

Change-Id: I88f47a7143e875b60fea818bdb4d7b037345d055
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c2a3f81a63
gnu: r-annotationhub: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.12.0.
[propagated-inputs]: Remove r-interactivedisplaybase.

Change-Id: I849b7fcc5eea1cc48076b134fddda17bc8461973
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5c889fbcfd
gnu: r-annotationforge: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.46.0.

Change-Id: Ieabb5d5d3f990d961014003d47eb5dd21656ebc2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 131109f910
gnu: r-annotationfilter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.28.0.

Change-Id: Ib4cad5054f1cf174ee2ecb589f8442e9dc86e5dc
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d90bc96e17
gnu: r-annotationdbi: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.66.0.

Change-Id: Ia103d540fc7e872fd96bffa044076c969c072319
2024-05-08 12:53:21 +02:00
Ricardo Wurmus cb56dc94bc
gnu: r-annotate: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.82.0.

Change-Id: I9940d1837c62c2421513021fe12fb87e629ba0df
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 55dca2271e
gnu: r-affxparser: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.76.0.

Change-Id: I9c412f0ef4f29d50e07f32a6944f13ba470cc6c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 563de39417
gnu: r-affyio: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.74.0.

Change-Id: If694dbba3f447019bb822ba94ff73976b77864c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 2299ed5417
gnu: r-affycoretools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.76.0.

Change-Id: I486f8aca7a0d2a9640b3ae05ba50fdc6420fde24
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b563dc47fd
gnu: r-affycontam: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.62.0.

Change-Id: Ia2688e906b16b11d96925beded22d47cbb3f67c0
2024-05-08 12:53:21 +02:00
Ricardo Wurmus fdd6664fb1
gnu: r-affycomp: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.80.0.

Change-Id: I544133d53f46e156cd0483c27a88c56f31be4af4
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 65e26fef18
gnu: r-affy: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.82.0.

Change-Id: Ie17dffe76198632a8e1ea6f7a0f1c9eb68049b98
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 0949c9f244
gnu: r-nebulosa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.14.0.

Change-Id: I9d86fabf46fe139c6e6f210f46dafd5132c5adad
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c322655c7d
gnu: r-italics: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.64.0.

Change-Id: Ibed68d0d8209db3f5a76c507a58c76389d546af2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a32bba3fb6
gnu: r-isoformswitchanalyzer: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.4.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I1e6f6767698f2f97cfc53637987a824a6d80609d
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b4d31f1a10
gnu: r-iranges: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.0.

Change-Id: I9e1a24614dcfc179a5659b3bccdde26cb7b06dab
2024-05-08 12:53:21 +02:00
Ricardo Wurmus f4c03a251e
gnu: r-infercnv: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.20.0.
[inputs]: Remove python.

Change-Id: Ib8666fd27a504c824c747cc27960bde490459544
2024-05-08 12:53:21 +02:00
Ricardo Wurmus bec276a979
gnu: r-ideoviz: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.40.0.

Change-Id: I5b40d23a9955c9844eee99525977fdf72d7f31a8
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.

Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.

Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 657c030a57
gnu: r-dss: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.

Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.

Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fa46220283
gnu: r-drimseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.

Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
Ricardo Wurmus a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.

Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.

Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
Ricardo Wurmus d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.

Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.

Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.

Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.

Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.

Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.

Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.

Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.

Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
Ricardo Wurmus f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.

Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
Ricardo Wurmus aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.

Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 40e85015aa
gnu: r-decipher: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.

Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 199305df78
gnu: r-dearseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.

Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.

Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 091e0144a2
gnu: r-dama: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.

Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.

Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 6134ddd012
gnu: r-coverageview: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.

Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.

Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
Ricardo Wurmus cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.

Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 807f16e459
gnu: r-cardelino: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.

Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00