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95104 Commits (9b615c408f2b047f0bd1de8c035e47d7141f0b98)

Author SHA1 Message Date
zimoun ba197ae988
gnu: r-complexheatmap: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.14.0.
2022-11-24 12:31:21 +01:00
zimoun bfed8f183d
gnu: r-chipseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.48.0.
2022-11-24 12:31:20 +01:00
zimoun 32629c01ef
gnu: r-chipseeker: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.0.
2022-11-24 12:31:20 +01:00
zimoun 9d8107b4d7
gnu: r-category: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.64.0.
2022-11-24 12:31:20 +01:00
zimoun bebf55cbd6
gnu: r-bsgenome: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.1.
2022-11-24 12:31:20 +01:00
zimoun 3e945a87e0
gnu: r-biovizbase: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.46.0.
2022-11-24 12:31:20 +01:00
zimoun 30f2fc13c6
gnu: r-biostrings: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.66.0.
2022-11-24 12:31:20 +01:00
zimoun 9048d502da
gnu: r-biocparallel: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.1.
[arguments]<phases>: Update 'make-reproducible' to released files.
[propagated-inputs]: Add r-cpp11.
2022-11-24 12:31:20 +01:00
zimoun 1ef39d3d28
gnu: r-biomart: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.54.0.
2022-11-24 12:31:20 +01:00
zimoun a0d2db2e08
gnu: r-biobase: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.58.0.
2022-11-24 12:31:20 +01:00
zimoun 822ad274c9
gnu: r-bamsignals: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.30.0.
2022-11-24 12:31:20 +01:00
zimoun 203ddafa09
gnu: r-aroma-light: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.28.0.
2022-11-24 12:31:19 +01:00
zimoun c5bcfef628
gnu: r-annotationhub: Update to 3.6.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.6.0.
2022-11-24 12:31:19 +01:00
zimoun 065fdc2bb1
gnu: r-annotationforge: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.0.
2022-11-24 12:31:19 +01:00
zimoun 748599dc6b
gnu: r-annotationfilter: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.22.0.
2022-11-24 12:31:19 +01:00
zimoun 89f6d1d425
gnu: r-annotationdbi: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.0.
2022-11-24 12:31:19 +01:00
zimoun dc8c3024c0
gnu: r-annotate: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.76.0.
2022-11-24 12:31:19 +01:00
zimoun 261e3c12c2
gnu: r-affxparser: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.70.0.
2022-11-24 12:31:19 +01:00
zimoun 45c83ffbe5
gnu: r-affyio: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.68.0.
2022-11-24 12:31:19 +01:00
zimoun 9947e412ac
gnu: r-affycoretools: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.70.0.
2022-11-24 12:31:19 +01:00
zimoun 6e2871262c
gnu: r-affycontam: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.56.0.
2022-11-24 12:31:19 +01:00
zimoun ceb39bfb39
gnu: r-affycompatible: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.58.0.
2022-11-24 12:31:18 +01:00
zimoun 7034dcc2d6
gnu: r-affycomp: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.74.0.
2022-11-24 12:31:18 +01:00
zimoun b7359c3b17
gnu: r-affy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.76.0.
2022-11-24 12:31:18 +01:00
zimoun 4daec4dc4d
gnu: r-isoformswitchanalyzer: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.20.0.
2022-11-24 12:31:18 +01:00
zimoun cc0464f530
gnu: r-iranges: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.32.0.
2022-11-24 12:31:18 +01:00
zimoun e73a833dd2
gnu: r-infercnv: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.0.
[propagated-inputs]: Remove r-leiden and r-reshape.  Add r-igraph, r-reshape2,
and r-seurat.
2022-11-24 12:31:18 +01:00
zimoun 2564b7bcff
gnu: r-ideoviz: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.34.0.
2022-11-24 12:31:18 +01:00
zimoun 81ba7cc732
gnu: r-bluster: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.8.0.
2022-11-24 12:31:18 +01:00
zimoun de72bdab94
gnu: r-drimseq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.26.0.
2022-11-24 12:31:17 +01:00
zimoun c7bf9a1a58
gnu: r-derfinderhelper: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.32.0.
2022-11-24 12:31:17 +01:00
zimoun 2e48b8b028
gnu: r-delayedarray: Update to 0.24.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.24.0.
2022-11-24 12:31:17 +01:00
zimoun b8f0bf3e4d
gnu: r-deepsnv: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.44.0.
2022-11-24 12:31:17 +01:00
zimoun ef81f5f55e
gnu: r-decoupler: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.4.0.
2022-11-24 12:31:17 +01:00
zimoun d3f0d2abe4
gnu: r-deconvr: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.0.
2022-11-24 12:31:17 +01:00
zimoun f7dd1e4552
gnu: r-decontam: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.18.0.
2022-11-24 12:31:17 +01:00
zimoun 36c940a4d7
gnu: r-deconrnaseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.40.0.
2022-11-24 12:31:17 +01:00
zimoun 9b717bcad9
gnu: r-decomptumor2sig: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.14.0.
2022-11-24 12:31:17 +01:00
zimoun 8fd5bbc31e
gnu: r-decomplexdisease: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-decomplexdisease): Update to 1.18.0.
2022-11-24 12:31:17 +01:00
zimoun 483084b7f9
gnu: r-deco: Update to 1.13.0.
* gnu/packages/bioconductor.scm (r-deco): Update to 1.13.0.
2022-11-24 12:31:16 +01:00
zimoun bd622e1464
gnu: r-decipher: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.26.0.
2022-11-24 12:31:16 +01:00
zimoun e3262cc2e1
gnu: r-debcam: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.16.0.
2022-11-24 12:31:16 +01:00
zimoun 00400127ef
gnu: r-dearseq: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.10.0.
[propagated-inputs]: Add r-scattermore.
2022-11-24 12:31:16 +01:00
zimoun 3a90895228
gnu: r-damefinder: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.10.0.
2022-11-24 12:31:16 +01:00
zimoun f5118505f7
gnu: r-dama: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.70.0.
2022-11-24 12:31:16 +01:00
zimoun f0ed6c519c
gnu: r-cummerbund: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.40.0.
2022-11-24 12:31:16 +01:00
zimoun 2bfc463a42
gnu: r-coverageview: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.36.0.
2022-11-24 12:31:16 +01:00
zimoun 176e20a1f1
gnu: r-biocgenerics: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.44.0.
2022-11-24 12:31:16 +01:00
zimoun 9e0e4bf347
gnu: r-biocversion: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.16.0.
2022-11-24 12:31:15 +01:00
zimoun 6af3770787
gnu: r-barcodetrackr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.6.0.
2022-11-24 12:31:15 +01:00
zimoun c032441772
gnu: r-banocc: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.22.0.
2022-11-24 12:31:15 +01:00
zimoun f3038efb80
gnu: r-bandits: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.0.
2022-11-24 12:31:15 +01:00
zimoun f07c0d00cd
gnu: r-bambu: Update to 3.0.1.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.1.
2022-11-24 12:31:15 +01:00
zimoun 5b4f7d11ae
gnu: r-badregionfinder: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.26.0.
2022-11-24 12:31:15 +01:00
zimoun 25104e7a6b
gnu: r-bader: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.36.0.
2022-11-24 12:31:15 +01:00
zimoun 5fd038bd49
gnu: r-bac: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-bac): Update to 1.58.0.
2022-11-24 12:31:15 +01:00
zimoun 91d928706a
gnu: r-basespacer: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.42.0.
2022-11-24 12:31:15 +01:00
zimoun e9a7c42deb
gnu: r-baalchip: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.24.0.
2022-11-24 12:31:15 +01:00
zimoun 7bb05be10a
gnu: r-awst: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.6.0.
2022-11-24 12:31:14 +01:00
zimoun faddfa8aed
gnu: r-awfisher: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.12.0.
2022-11-24 12:31:14 +01:00
zimoun 381907d25d
gnu: r-attract: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.50.0.
2022-11-24 12:31:14 +01:00
zimoun f185d3f680
gnu: r-atsnp: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.14.0.
2022-11-24 12:31:14 +01:00
zimoun 110ac40dea
gnu: r-atena: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.0.
2022-11-24 12:31:14 +01:00
zimoun a1dbd6b2da
gnu: r-asset: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.16.0.
2022-11-24 12:31:14 +01:00
zimoun 930fab74f2
gnu: r-assessorf: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.16.0.
2022-11-24 12:31:14 +01:00
zimoun dfb78fd76e
gnu: r-aspli: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.8.0.
2022-11-24 12:31:14 +01:00
zimoun b89305c18d
gnu: r-asgsca: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.32.0.
2022-11-24 12:31:14 +01:00
zimoun 110f0f8483
gnu: r-aseb: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.42.0.
2022-11-24 12:31:14 +01:00
zimoun 1114e837a9
gnu: r-antiprofiles: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.38.0.
2022-11-24 12:31:13 +01:00
zimoun bc62494bc8
gnu: r-annmap: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.40.0.
2022-11-24 12:31:13 +01:00
zimoun d18f8e367e
gnu: r-anf: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-anf): Update to 1.20.0.
2022-11-24 12:31:13 +01:00
zimoun cbeefda563
gnu: r-aneufinder: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.26.0.
2022-11-24 12:31:13 +01:00
zimoun eddbd27be5
gnu: r-aldex2: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.30.0.
2022-11-24 12:31:13 +01:00
zimoun 190ed5f137
gnu: r-anaquin: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.22.0.
2022-11-24 12:31:13 +01:00
zimoun ecb91b3404
gnu: r-amaretto: Update to 1.13.0.
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.13.0.
2022-11-24 12:31:13 +01:00
zimoun c9c4d6b501
gnu: r-amountain: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.24.0.
2022-11-24 12:31:13 +01:00
zimoun f217ff6463
gnu: r-airpart: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.6.0.
2022-11-24 12:31:13 +01:00
zimoun fb7a1b340b
gnu: r-agimicrorna: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.48.0.
2022-11-24 12:31:12 +01:00
zimoun 5d09a99174
gnu: r-adductomicsr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.14.0.
2022-11-24 12:31:12 +01:00
zimoun e153f4904d
gnu: r-agilp: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.30.0.
2022-11-24 12:31:12 +01:00
zimoun fc60b9dfe7
gnu: r-aggregatebiovar: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.8.0.
2022-11-24 12:31:12 +01:00
zimoun f74c670c7f
gnu: r-agdex: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.46.0.
2022-11-24 12:31:12 +01:00
zimoun 014fc145f8
gnu: r-affyrnadegradation: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.44.0.
2022-11-24 12:31:12 +01:00
zimoun 69ecae7801
gnu: r-affixcan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.16.0.
2022-11-24 12:31:12 +01:00
zimoun b772bc7f75
gnu: r-adsplit: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.68.0.
2022-11-24 12:31:12 +01:00
zimoun daf0729533
gnu: r-adimpute: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.8.0.
2022-11-24 12:31:12 +01:00
zimoun a62284ad13
gnu: r-adamgui: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.14.0.
2022-11-24 12:31:12 +01:00
zimoun 38fc0acf4d
gnu: r-adam: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-adam): Update to 1.14.0.
2022-11-24 12:31:11 +01:00
zimoun f24085bfb3
gnu: r-absseq: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.52.0.
2022-11-24 12:31:11 +01:00
zimoun 349804b602
gnu: r-abarray: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.66.0.
2022-11-24 12:31:11 +01:00
zimoun 8f67799a1b
gnu: Add r-gson.
* gnu/packages/cran.scm (r-gson): New variable.
2022-11-24 12:31:11 +01:00
zimoun 176fd3b052
gnu: Add r-rorcid.
* gnu/packages/cran.scm (r-rorcid): New variable.
2022-11-24 12:31:11 +01:00
zimoun 3d073b86d3
gnu: Add r-biocbaseutils.
* gnu/packages/bioconductor.scm (r-biocbaseutils): New variable.
2022-11-24 12:31:11 +01:00
zimoun e273f52358
gnu: r-ggprism: Update to 1.0.4.
* gnu/packages/cran.scm (r-ggprism): Update to 1.0.4.
2022-11-24 12:31:11 +01:00
zimoun c70207ae3b
gnu: r-ggplot2: Update to 3.4.0.
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-vctrs.
2022-11-24 12:31:11 +01:00
zimoun 8105b3c09f
gnu: Add r-hdo-db.
* gnu/packages/bioconductor.scm (r-hdo-db): New variable.
2022-11-24 12:31:11 +01:00
conses 68113dc249
gnu: Add whoogle-search.
* gnu/packages/python-web.scm (whoogle-search): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:25 +00:00
Bruno Victal 42898ae8ca
gnu: Add mympd.
* gnu/packages/mpd.scm (mympd): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:25 +00:00
Felix Lechner 963e86af87
gnu: Add hebcal.
* gnu/packages/calendar.scm (hebcal): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:25 +00:00
Felix Lechner 4ca2159bab
gnu: Add go-github-com-hebcal-hebcal-go.
* gnu/packages/golang.scm (go-github-com-hebcal-hebcal-go): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:25 +00:00
Felix Lechner b0307b7c12
gnu: Add go-github-com-hebcal-gematriya.
* gnu/packages/golang.scm (go-github-com-hebcal-gematriya): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:25 +00:00
Felix Lechner 58eef1a258
gnu: Add go-github-com-nathan-osman-go-sunrise.
* gnu/packages/golang.scm (go-github-com-nathan-osman-go-sunrise): New
variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-24 09:44:24 +00:00
Paul A. Patience 8bde62d174
gnu: Add cl-tar.
* gnu/packages/lisp-xyz.scm (sbcl-tar, cl-tar, ecl-tar): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-24 10:16:50 +01:00
Paul A. Patience b0c392ffcf
gnu: Add cl-tar-file.
* gnu/packages/lisp-xyz.scm (sbcl-tar-file, cl-tar-file, ecl-tar-file):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-24 10:11:18 +01:00
Paul A. Patience 8a620036d7
gnu: Add cl-40ants-doc.
* gnu/packages/lisp-xyz.scm (sbcl-40ants-doc, cl-40ants-doc,
  ecl-40ants-doc): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-11-24 10:06:21 +01:00
kiasoc5 4a97591d0a
gnu: btrfs-progs: Update to 6.0.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 6.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-11-24 14:15:58 +08:00
kiasoc5 6e142c69bd
gnu: xfsprogs: Update to 6.0.0.
* gnu/packages/linux.scm (xfsprogs): Update to 6.0.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-11-24 14:13:01 +08:00
jgart 148c75e75e
gnu: clasp: Update to 3.3.9.
* gnu/packages/maths.scm (clasp): Update to 3.3.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-11-24 14:08:54 +08:00
Simen Endsjø c4bbdaf2db
gnu: font-iosevka: Update to 16.4.0.
* gnu/packages/fonts.scm (font-iosevka): Update to 16.4.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-11-24 14:07:11 +08:00
Ludovic Courtès 02a4e54250
gnu: grep: Skip 'triple-backref' test.
* gnu/packages/base.scm (grep)[arguments]: Add
'skip-triple-backref-test' phase for GNU/Hurd.
2022-11-23 19:34:42 +01:00
Ludovic Courtès 2b151eb286
gnu: gettext: Skip Gnulib tests that fail on GNU/Hurd.
* gnu/packages/gettext.scm (gettext-minimal)[arguments]: In
'patch-tests' phase, arrange to not run 'test-tls'.  Adjust
'XFAIL_TESTS' flag passed to #:make-flags.
2022-11-23 19:34:42 +01:00
Tobias Geerinckx-Rice f7cb2b22a2
gnu: guile-torrent: Fix build.
* gnu/packages/guile-xyz.scm (guile-torrent)[propagated-inputs]:
Replace (3.0) guile-gcrypt with guile2.2-gcrypt.

Reported by mirai on #guix.
2022-11-20 01:00:00 +01:00
Pierre Neidhardt 22a788d085
gnu: sbcl-cl-prevalence: Update to 20221122.
* gnu/packages/lisp-xyz.scm (sbcl-cl-prevalence): Update to 20221122.
This update contains a critical bugfix, hence the conssecutive version bump.
2022-11-23 13:59:57 +01:00
Ricardo Wurmus 4b23e2d868
gnu: python-py7zr: Update to 0.20.2.
* gnu/packages/python-compression.scm (python-py7zr): Update to 0.20.2.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-brotli, python-brotlicffi,
python-importlib-metadata, python-inflate64, python-psutil, python-pybcj,
python-pycryptodomex, and python-pyppmd; remove python-bcj-cffi,
python-ppmd-cffi, python-pycryptodome, and python-zstandard.
2022-11-23 13:57:48 +01:00
Ricardo Wurmus 101a4e2718
gnu: Add python-pybcj.
* gnu/packages/python-compression.scm (python-pybcj): New variable.
2022-11-23 13:57:48 +01:00
Ricardo Wurmus 6ea2229f89
gnu: Add python-inflate64.
* gnu/packages/python-compression.scm (python-inflate64): New variable.
2022-11-23 13:57:48 +01:00
Ricardo Wurmus 136760c3a9
gnu: python-multivolumefile: Update to 0.2.3.
* gnu/packages/python-compression.scm (python-multivolumefile): Update to
0.2.3.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pep517 and python-setuptools; add
python-hypothesis.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus fb2d4aa088
gnu: Add python-brotlicffi.
* gnu/packages/python-compression.scm (python-brotlicffi): New variable.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus d2a7bd50a9
gnu: Add python-pyppmd.
* gnu/packages/python-compression.scm (python-pyppmd): New variable.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus 0d9b69795d
gnu: python-zstandard: Update to 0.19.0.
* gnu/packages/python-compression.scm (python-zstandard): Update to 0.19.0.
[propagated-inputs]: Add python-cffi.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus 32fa848611
gnu: python-pyzstd: Update to 0.15.3.
* gnu/packages/python-compression.scm (python-pyzstd): Update to 0.15.3.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus 48a5dc0ffb
gnu: python-ppmd-cffi: Update to 0.5.0.
* gnu/packages/python-compression.scm (python-ppmd-cffi): Update to 0.5.0.
[native-inputs]: Remove python-setuptools and python-pep517; add
python-hypothesis.
2022-11-23 13:57:47 +01:00
Ricardo Wurmus 3ab9adba57
gnu: python-munkres: Conditionally disable failing test.
* gnu/packages/python-xyz.scm (python-munkres)[arguments]: Add phase
"disable-test" to patch test suite.
2022-11-23 13:57:47 +01:00
Mădălin Ionel Patrașcu 093bf20cdc
gnu: Add r-alpine.
* gnu/packages/bioconductor.scm (r-alpine): New variable.
2022-11-23 13:57:43 +01:00
Sharlatan Hellseher 7fa8c05753
gnu: python-cdflib: Update to 0.4.9.
* gnu/packages/astronomy.scm (python-cdflib): Update to 0.4.9.
[build-system]: Use pyproject-build-system to simplify package.
[description]: Expand acronym for CDF.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:11 +00:00
Sharlatan Hellseher 6ffe15bda7
gnu: Add cl-cacau.
* gnu/packages/lisp-check.scm (cl-cacau, ecl-cacau, sbcl-cacau): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:11 +00:00
Sharlatan Hellseher cd9df33e41
gnu: Add cl-eventbus.
* gnu/packages/lisp-xyz.scm (cl-eventbus, ecl-eventbus, sbcl-eventbus): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:11 +00:00
Sharlatan Hellseher f39a18e7d4
gnu: Add cl-assert-p.
* gnu/packages/lisp-check.scm (cl-assert-p, ecl-assert-p, sbcl-assert-p): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:11 +00:00
Sharlatan Hellseher dc95215dc0
gnu: Add cl-assertion-error.
* gnu/packages/lisp-check.scm (cl-assertion-error, ecl-assertion-error,
sbcl-assertion-error): New variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:11 +00:00
Sharlatan Hellseher 029234bdad
gnu: Add cl-simplet.
* gnu/packages/lisp-check.scm (cl-simplet, ecl-simplet, sbcl-simplet): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:10 +00:00
jgart 36562c74dc
gnu: Add emacs-inspector.
* gnu/packages/emacs-xyz.scm (emacs-inspector): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:10 +00:00
jgart e329c5e05d
gnu: Add emacs-treeview.
* gnu/packages/emacs-xyz.scm (emacs-treeview): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:10 +00:00
Hilton Chain b8985be94c
gnu: font-sarasa-gothic: Update to 0.37.4.
* gnu/packages/fonts.scm (font-sarasa-gothic): Update to 0.37.4.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-23 09:53:10 +00:00
Andrew Tropin 5ba10abc49
gnu: Add emacs-jarchive.
* gnu/packages/emacs-xyz.scm (emacs-jarchive): New variable.
2022-11-23 13:29:09 +04:00
Marius Bakke 3879c1f6cd
gnu: heads-dev-cpio: Add missing module import.
* gnu/packages/heads.scm (heads-dev-cpio)[arguments]<#:modules>: Add
(guix build syscalls).
2022-11-23 10:16:47 +01:00
Marius Bakke 2c8329de51
gnu: emacs-ediprolog: Update source URI.
This is a follow-up to commit 575790f5f5.

* gnu/packages/emacs-xyz.scm (emacs-ediprolog)[source](uri): Download tarball
instead of .el.
2022-11-23 10:16:47 +01:00
Marius Bakke 9e44a6f776
gnu: knot-resolver: Update to 5.5.3.
* gnu/packages/dns.scm (knot-resolver): Update to 5.5.3.
2022-11-23 10:16:47 +01:00
Marius Bakke 80305088b5
gnu: drbd-utils: Fix corrupted man page.
* gnu/packages/cluster.scm (drbd-utils)[native-inputs]: Change from
DOCBOOK-XSL to DOCBOOK-XSL-NEXT.
2022-11-23 10:16:47 +01:00
Greg Hogan bddb43b422
gnu: python-hmmlearn: Update to 0.2.7.
* gnu/packages/machine-learning.scm (python-hmmlearn): Update to 0.2.7.
[source]<#:origin>: Remove deletion snippet for file removed upstream.
[propagated-inputs]: Add pybind11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-22 23:17:06 +01:00
Greg Hogan ca428f944f
gnu: octave: Update to 7.2.0.
* gnu/packages/maths.scm (octave): Update to 7.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-22 23:17:06 +01:00
Greg Hogan 7534d8067f
gnu: suitesparse: Update to 5.13.0.
* gnu/packages/maths.scm (suitesparse): Update to 5.13.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-22 23:17:05 +01:00
Martin Marshall eb5e650e09
gnu: emacs-flymake-proselint: Remove references to Flycheck.
* gnu/packages/emacs-xyz.scm (emacs-flymake-proselint): Remove references to
flycheck.
[source]: Correct URL path-name.
[propagated-inputs]: Remove EMACS-FLYCHECK.
[home-page]: Correct URL path-name.

Package was installing EMACS-FLYCHECK but has no dependency on it.  It uses
Emacs built-in, Flymake, instead.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-11-22 18:48:42 +01:00
Nicolas Goaziou 452386617a
gnu: emacs-cape: Update to 0.11.
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 0.11.
2022-11-22 17:38:12 +01:00
Nicolas Goaziou d0c8816f37
gnu: emacs-corfu: Update to 0.33.
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.33.
2022-11-22 17:38:11 +01:00
Michael Rohleder a44d6e1ea2
gnu: xfce4-screenshooter: Update to 1.10.0.
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.10.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:16 +00:00
Michael Rohleder 1f600136ff
gnu: xfce4-settings: Update to 4.16.5.
* gnu/packages/xfce.scm (xfce4-settings): Update to 4.16.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:16 +00:00
Hilton Chain d54febb86f
gnu: Add emacs-ebuku.
* gnu/packages/emacs-xyz.scm (emacs-ebuku): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:15 +00:00
Greg Hogan 07746c2b15
gnu: libcxx: Update to 15.0.5.
* gnu/packages/llvm.scm (libcxx): Update to 15.0.5.
[version]: Use version from LLVM-15.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:15 +00:00
Greg Hogan 8952a94086
gnu: lldb: Update to 15.0.5.
* gnu/packages/llvm.scm (lldb): Update to 15.0.5.
[version]: Use version from LLVM-15.
[inputs]: Change from LLVM-14 and CLANG-14 to LLVM-15 and CLANG-15.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:15 +00:00
Greg Hogan 15b08918e9
gnu: LLVM, Clang, libomp, lld: Update to 15.0.5.
* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15):
Update to 15.0.5.
(lld)[version]: Use version from LLVM-15.
(%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22 09:24:15 +00:00