b0e76b0828
gnu: ocaml-qcheck: Update to 0.18.
...
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.18.
* gnu/packages/patches/ocaml-qcheck-fix-test-whitespace.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-20 17:08:06 +01:00
0df82727a6
gnu: ocaml-ppx-variants-conv: Update to 0.14.2.
...
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Update to 0.14.2.
[origin]: Remove patch.
* gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-20 17:07:50 +01:00
97fd67edea
gnu: ocaml-ppx-js-style: Update to 0.14.1.
...
* gnu/packages/ocaml.scm (ocaml-ppx-js-style): Update to 0.14.1.
2021-11-20 17:07:44 +01:00
95e6a977fa
gnu: ocaml-odoc: Update to 2.0.0.
...
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.0.0.
[inputs, native-inputs]: Adjust inputs.
(ocaml4.07-odoc)[inputs, native-inputs]: Keep previous inputs.
2021-11-20 17:07:24 +01:00
1277bd9fc0
gnu: ocaml-ocplib-endian: Update to 1.2.
...
* gnu/packages/ocaml.scm (ocaml-ocplib-endian): Update to 1.2.
2021-11-20 17:07:14 +01:00
e46621ca6c
gnu: ocaml-mtime: Update to 1.3.0.
...
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.3.0.
2021-11-20 17:07:10 +01:00
63e5e127cb
gnu: ocaml-mdx: Remove unneeded dependency.
...
* gnu/packages/ocaml.scm (ocaml-mdx)[inputs]: remove
ocaml-migrate-parsetree.
2021-11-20 17:06:59 +01:00
e7bf93e5cc
gnu: ocaml-integers: Update to 0.5.1.
2021-11-20 17:06:50 +01:00
426faa76d1
gnu: ocaml-fmt: Update to 0.9.0.
...
* gnu/packages/ocaml.scm (ocaml-fmt): Update to 0.9.0.
(ocaml4.07-fmt): New variable.
2021-11-20 17:06:30 +01:00
c618f4a9cc
gnu: pigx-bsseq: Update to 0.1.6.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.6.
2021-11-20 16:31:32 +01:00
b182e13638
gnu: python-scikit-learn: Update to 1.0.1.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1.
[arguments]: Disable one failing network test.
2021-11-20 16:22:53 +01:00
3d56b8af90
gnu: python-scikit-learn: Run tests conditionally.
...
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect
TESTS? in 'check phase.
2021-11-20 16:22:53 +01:00
7ca5dc370d
gnu: python-joblib: Update to 1.1.0.
...
* gnu/packages/python-xyz.scm (python-joblib): Update to 1.1.0.
[arguments]: Disable one test.
2021-11-20 16:22:53 +01:00
f407e4b0f9
gnu: python2-joblib: Do not inherit source from python-joblib.
...
* gnu/packages/python-xyz.scm (python2-joblib)[version]: Explicitly set to
0.14.1.
[source]: Do not inherit.
2021-11-20 16:22:49 +01:00
76df1ad3df
gnu: gtk: Guard against timeouts in the test suite.
...
This change piggy backs on the improvements to the meson-build-system made in
dfcc96d8f48716ae5aefb383c58b153d5bcb407c; it's motivated by timeouts that
occurred in the GTK test suite while building on a heavily loaded machine.
* gnu/packages/gtk.scm (gtk)[parallel-tests]: New argument.
[test-options]: New argument, which now includes --suite=gtk and
--no-suite=gsk-compare-broadway, to match what upstream uses.
[phases]{check}: Remove override.
2021-11-20 08:57:02 -05:00
58c42ce41d
gnu: libnice: Disable the 'test-bsd' test.
...
* gnu/packages/networking.scm (libnice)
[phases]{disable-failing-test}: Rename to...
{disable-failing-tests}: ... this, plural. Disable 'test-bsd'.
2021-11-20 08:57:02 -05:00
cb09adc093
gnu: wayland: Use native-inputs unconditionally
...
* gnu/packages/freedesktop.scm (wayland): Remove trailing #t.
[phases]: Use native-inputs unconditionally.
2021-11-20 08:57:02 -05:00
afacad8b67
gnu: gnome-shell: Update to 41.0.
...
* gnu/packages/gnome.scm (gnome-shell): Update to 41.0.
[origin]: Remove patches and modules fields.
[phases]{pre-check}: Set HOME.
* gnu/packages/patches/gnome-shell-disable-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-20 08:57:01 -05:00
b342b68c83
gnu: gsettings-desktop-schemas: Update to 41.0.
...
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 41.0.
Reformat synopsis and description.
[origin]: Fix indentation.
2021-11-20 08:57:01 -05:00
9e87a92742
gnu: gjs: Update to 1.70.0.
...
* gnu/packages/gnome.scm (gjs): Update to 1.70.0.
2021-11-20 08:57:01 -05:00
d1c2fe248a
gnu: mutter: Update to 41.0 and enable tests.
...
* gnu/packages/gnome.scm (mutter): Update to 41.0.
[imported-modules, modules]: New arguments.
[configure-flags]: Specify the gles2_libname, egl_device and wayland_eglstream
options. Enable the profiler by removing the option.
[phases]{patch-dlopen-calls}: New phase.
{disable-problematic-tests}: Likewise.
{check}: Override phase.
[native-inputs]{xorg-server-for-tests}: Replace with...
{xvfb-run}: ... this.
{adwaita-icon-theme, libxcursor, pipewire-0.3}
{python-dbus, python-dbusmock, tini}: New native inputs.
[propagated-inputs]: Add libxcvt.
[inputs]: Add egl-wayland and sysprof.
2021-11-20 08:57:01 -05:00
7063ee6d9d
gnu: libxcursor: Add a search path for XCURSOR_PATH.
...
* gnu/packages/xorg.scm (libxcursor): Fix indentation.
[native-search-paths]: New field (previously commented). Update comment.
2021-11-20 08:57:01 -05:00
5b96e96510
gnu: Add cl-flute.
...
* gnu/packages/lisp-xyz.scm (cl-flute, ecl-flute, sbcl-flute):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-20 14:55:16 +01:00
118382b2a4
gnu: Add cl-let-over-lambda.
...
* gnu/packages/lisp-xyz.scm (cl-let-over-lambda, ecl-let-over-lambda,
sbcl-let-over-lambda): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-20 14:51:09 +01:00
740854ff06
gnu: Add cl-assoc-utils.
...
* gnu/packages/lisp-xyz.scm (cl-assoc-utils, ecl-assoc-utils,
sbcl-assoc-utils): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-20 14:44:58 +01:00
60bb03605a
gnu: Add libresprite.
...
* gnu/packages/game-development.scm (libresprite): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-20 12:16:11 +01:00
83580b949d
gnu: python-numba: Update to 0.54.1.
...
* gnu/packages/python-xyz.scm (python-numba): Update to 0.54.1.
[propagated-inputs]: Replace python-numpy with python-numpy-1.20.
[arguments]: Add phase 'disable-failing-tests.
2021-11-20 12:02:20 +01:00
bcf7d0bc7b
gnu: python-numba: Run tests conditionally.
...
* gnu/packages/python-xyz.scm (python-numba)[arguments]: Respect TESTS? argument.
2021-11-20 12:02:20 +01:00
40d4b541d9
gnu: python-numba: Remove trailing #T.
...
* gnu/packages/python-xyz.scm (python-numba)[arguments]: Remove trailing #T
from build phase.
2021-11-20 12:02:20 +01:00
d8b7986769
gnu: Add python-numpy-1.20.
...
* gnu/packages/python-xyz.scm (python-numpy-1.20): New variable.
2021-11-20 12:02:20 +01:00
cf649c1e0d
gnu: repo2docker: Use GUIX_PYTHONPATH.
...
* gnu/packages/jupyter.scm (repo2docker)[arguments]: Use GUIX_PYTHONPATH
instead of PYTHONPATH.
2021-11-20 12:02:19 +01:00
3b2553ee4c
gnu: python-llvmlite: Update to 0.37.0.
...
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.37.0.
[inputs]: Update patched LLVM.
2021-11-20 12:02:19 +01:00
2c19edeb4f
gnu: python-llvmlite: Remove trailing #T.
...
* gnu/packages/llvm.scm (python-llvmlite)[arguments]: Remove trailing #T from
build phases.
2021-11-20 12:02:19 +01:00
443f3e170a
gnu: python-pytorch: Warn of missing test inputs.
...
* gnu/packages/machine-learning.scm (python-pytorch): Add comment.
2021-11-20 12:02:19 +01:00
9a3dffc851
gnu: python-pytorch: Add missing input.
...
* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add
python-click.
2021-11-20 12:02:19 +01:00
1e13f73605
gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH.
...
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set
PYTHONPATH; use add-installed-pythonpath instead.
2021-11-20 12:02:19 +01:00
5f6558792f
gnu: opendht: Use GUIX_PYTHONPATH.
...
* gnu/packages/networking.scm (opendht)[arguments]: Use GUIX_PYTHONPATH in the wrapper.
2021-11-20 12:02:19 +01:00
b7a515c510
gnu: Add litecli.
...
* gnu/packages/databases.scm (litecli): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-20 11:41:22 +01:00
5c0e4cb107
gnu: python-folium: Fix build.
...
* gnu/packages/python-xyz.scm (python-folium): Update hash. Upstream
apparently re-tagged a different commit.
2021-11-20 09:52:20 +01:00
2afe2fe85e
gnu: emacs-iter2: Update to 1.1.
...
* gnu/packages/emacs-xyz.scm (emacs-iter2): Update to 1.1.
2021-11-20 09:42:46 +01:00
70a88dac11
gnu: laby: Fix build.
...
* gnu/packages/games.scm (laby)[inputs]: Use lablgtk3.
[arguments]: Remove allow-unsafe-strings phase.
2021-11-20 04:02:54 +01:00
42eeea188d
gnu: ocaml-frontc: Update to 4.1.0.
...
* gnu/packages/ocaml.scm (ocaml-frontc): Update to 4.1.0.
(ocaml4.07-frontc): New variable.
2021-11-20 03:48:28 +01:00
32cecfa057
gnu: ocaml-fileutils: Update to 0.6.3.
...
* gnu/packages/ocaml.scm (ocaml-fileutils): Update to 0.6.3.
2021-11-20 03:48:21 +01:00
b8f950cf9d
gnu: ocaml-csv: Update to 2.4.
...
* gnu/packages/ocaml.scm (ocaml-csv): Update to 2.4.
2021-11-20 03:48:19 +01:00
8e15801f23
gnu: ocaml-csexp: Update to 1.5.1.
...
* gnu/packages/ocaml.scm (ocaml-csexp): Update to 1.5.1.
2021-11-20 03:48:17 +01:00
25be347f00
gnu: ocaml-compiler-libs: Update to 0.12.4.
...
* gnu/packages/ocaml.scm (ocaml-compiler-libs): Update to 0.12.4.
2021-11-20 03:48:11 +01:00
58d65f9da8
gnu: ocaml-menhir: Make it its own variant.
...
* gnu/packages/ocaml.scm (ocaml-menhir)[properties]: Use the same menhir
even with ocaml-4.07.
2021-11-20 03:48:05 +01:00
718700cc95
gnu: ocaml-bitsring: Update to 4.1.0.
...
* gnu/packages/ocaml.scm (ocaml-bitstring): Update to 4.1.0.
(ocaml4.07-bitstring): New variable.
2021-11-20 03:47:56 +01:00
27c701a17b
gnu: coq-interval: Update home-page.
...
* gnu/packages/coq.scm (coq-interval)[home-page]: Update.
2021-11-20 00:39:01 +01:00
d326fdb7af
gnu: coq-gappa: Update home-page.
...
* gnu/packages/coq.scm (coq-gappa)[home-page]: Update.
2021-11-20 00:38:55 +01:00
5f7fb8bd37
gnu: coq-flocq: Update home-page.
...
* gnu/packages/coq.scm (coq-flocq)[home-page]: Update.
2021-11-20 00:36:08 +01:00
e1a8ba10ec
gnu: Add ocaml4.07-cstruct.
...
* gnu/packages/ocaml.scm (ocaml4.07-cstruct): New variable.
2021-11-20 00:22:50 +01:00
cebc0e54a4
gnu: Add ocaml4.07-base64.
...
* gnu/packages/ocaml.scm (ocaml4.07-base64): New variable.
2021-11-20 00:20:42 +01:00
be9ae1347c
gnu: ocaml-menhir: Update to 20211012.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20211012.
2021-11-20 00:15:10 +01:00
4f86ef865e
gnu: ocaml-uunf: Update to 14.0.0.
...
* gnu/packages/ocaml.scm (ocaml-uunf): Update to 14.0.0.
2021-11-19 23:57:38 +01:00
ee1188dcb1
gnu: ocaml-uucp: Update to 14.0.0.
...
* gnu/packages/ocaml.scm (ocaml-uucp): Update to 14.0.0.
2021-11-19 23:53:47 +01:00
a37f84fd61
gnu: ocaml-uucd: Update to 14.0.0.
...
* gnu/packages/ocaml.scm (ocaml-uucd): Update to 14.0.0.
2021-11-19 23:53:35 +01:00
c83dbe2cc0
gnu: ocaml-uuseg: Update to 14.0.0.
...
* gnu/packages/ocaml.scm (ocaml-uuseg): Update to 14.0.0.
2021-11-19 23:44:16 +01:00
2db788fe74
gnu: elogind: Revert changes to polkit build time detection.
...
* gnu/packages/patches/elogind-revert-polkit-detection.patch: New file.
* gnu/packages/freedesktop.scm (elogind): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-19 17:19:34 -05:00
7cad446653
gnu: cl-cxml-rng: Fix license.
...
This is a followup to 3f6953b54e
2021-11-19 23:04:19 +01:00
25b6e7110c
gnu: python-jupyter-console: Update to 6.4.0.
...
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.4.0.
[native-inputs]: Add PYTHON-PYTEST.
2021-11-19 22:35:22 +01:00
7c9801e857
gnu: python-notebook: Fix tests that rely on the gio "trash" mechanism.
...
Previously 'test_delete' and a couple of related tests in
'test_content_api.py' would fail:
https://lists.gnu.org/archive/html/guix-devel/2021-11/msg00083.html
Reported by Ricardo Wurmus.
* gnu/packages/python-xyz.scm (python-notebook)[arguments]: Add
'use-our-home-for-tests' phase. In 'check' phase, remove call to
'setenv' and unnecessary use of 'with-directory-excursion'.
2021-11-19 21:27:18 +01:00
256c3e714a
gnu: mycli: Update home page.
...
* gnu/packages/databases.scm (mycli)[home-page]: Update.
2021-11-19 21:35:23 +05:30
54cc341e24
gnu: mycli: Update to 1.24.1.
...
* gnu/packages/databases.scm (mycli): Update to 1.24.1.
[propagated-inputs]: Add python-pyaes and python-pyperclip.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-11-19 21:32:04 +05:30
d55ed2725e
gnu: wlroots: Remove unneeded elogind dependency.
...
* gnu/packages/wm.scm (wlroots): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-19 14:26:15 +01:00
02a3a1bdd7
gnu: seatd: Make elogind a propagated input.
...
* gnu/packages/freedesktop.scm (seatd): Do it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-19 14:26:15 +01:00
d9e3c1b0b3
gnu: geary: Upgrade to 40.0
...
* gnu/packages/gnome.scm (geary): Upgrade to 40.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-19 14:26:15 +01:00
86f031e877
gnu: gmime: Install the vapi file.
...
* gnu/packages/mail.scm (gmime)[configure flags]: Build the vapi file.
[native-inputs]: Add vala.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-19 14:26:14 +01:00
6460345725
gnu: ocaml-ounit: Update to 2.2.4.
...
* gnu/packages/ocaml.scm (ocaml-ounit): Update to 2.2.4. Inherit from
ocaml-ounit2.
[arguments]: Use installation instructions from opam.
2021-11-19 13:55:19 +01:00
42070c199a
gnu: emacs-flymake-kondor: Update to 0.1.3.
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-kondor): Update to 0.1.3.
2021-11-19 12:47:15 +01:00
bd2aa8031b
gnu: nyxt: Update to 2.2.3.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 2.2.3.
2021-11-19 11:20:32 +01:00
044161025e
gnu: sbcl-cl-webkit: Update to 3.4.0.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.4.0.
2021-11-19 11:13:54 +01:00
0f2a6fa49c
gnu: Add cl-https-everywhere.
...
* gnu/packages/lisp-xyz.scm (cl-https-everywhere, sbcl-cl-https-everywhere):
New variables.
2021-11-19 11:06:50 +01:00
ad9b5cd19b
gnu: emacs-evil-multiedit: Update to 1.4.1.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-multiedit): Update to 1.4.1.
[arguments]<#:phases>: Prevent test suite from downloading packages. Remove
trailing #t.
2021-11-19 10:51:09 +01:00
e3bba7f720
gnu: Add cl-terminal-keypress.
...
* gnu/packages/lisp-xyz.scm (cl-terminal-keypress,
ecl-terminal-keypress, sbcl-terminal-keypress): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:42 +01:00
4cc345faf9
gnu: Add cl-trivial-raw-io.
...
* gnu/packages/lisp-xyz.scm (cl-trivial-raw-io, ecl-trivial-raw-io,
sbcl-trivial-raw-io): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:42 +01:00
04ed4a0e05
gnu: Add cl-which.
...
* gnu/packages/lisp-xyz.scm (cl-which, ecl-which, sbcl-which): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:42 +01:00
03b146c45c
gnu: Add cl-trivial-open-browser.
...
* gnu/packages/lisp-xyz.scm (cl-trivial-open-browser,
ecl-trivial-open-browser, sbcl-trivial-open-browser):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:42 +01:00
df1e97a644
gnu: Add cl-terminal-size.
...
* gnu/packages/lisp-xyz.scm (cl-terminal-size, ecl-terminal-size,
sbcl-terminal-size): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
a5185d9b64
gnu: Add cl-routes.
...
* gnu/packages/lisp-xyz.scm (cl-routes, ecl-routes, sbcl-routes):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
002e8bac4b
gnu: Add cl-pileup.
...
* gnu/packages/lisp-xyz.scm (cl-pileup, ecl-pileup, sbcl-pileup):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
641e3d1288
gnu: Add cl-path-parse.
...
* gnu/packages/lisp-xyz.scm (cl-path-parse, ecl-path-parse,
sbcl-path-parse): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
a35debac97
gnu: Add cl-genhash.
...
* gnu/packages/lisp-xyz.scm (cl-genhash, ecl-genhash, sbcl-genhash):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
c7caeb33d6
gnu: jgmenu: Update to 4.4.0.
...
* gnu/packages/xdisorg.scm (jgmenu): Update to 4.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-19 10:48:41 +01:00
8dfab10152
gnu: emacs-toc-org: Update to 1.2.0.
...
* gnu/packages/emacs-xyz.scm (emacs-toc-org): Update to 1.2.0.
2021-11-19 10:35:03 +01:00
c00131d4ef
gnu: onionshare: Remove trailing #T.
...
* gnu/packages/tor.scm (onionshare)[arguments]: Remove trailing #T from build
phases.
2021-11-19 10:11:25 +01:00
7eb9b6ed6c
gnu: onionshare: Run tests conditionally.
...
* gnu/packages/tor.scm (onionshare)[arguments]: Respect TESTS?.
2021-11-19 10:11:25 +01:00
cab90f0832
gnu: onionshare: Do not set PYTHONPATH directly.
...
* gnu/packages/tor.scm (onionshare)[arguments]: Use ADD-INSTALLED-PYTHONPATH
in 'check phase.
2021-11-19 10:11:25 +01:00
66fc69794c
gnu: onionshare-cli: Update to 2.4.
...
* gnu/packages/tor.scm (onionshare-cli): Update to 2.4.
[inputs]: Add python-pynacl.
[arguments]: Patch references to /usr/share/tor in 'bake-tor phase; remove
trailing #T; run tests conditionally.
2021-11-19 10:11:25 +01:00
872116ebc6
gnu: python-eventlet: Update to 0.33.0.
...
* gnu/packages/python-xyz.scm (python-eventlet): Update to 0.33.0.
[propagated-inputs]: Add python-six.
[native-inputs]: Add python-nose.
[arguments]: Enable tests; add build phases 'avoid-OSError and
'delete-broken-tests; replace the 'check phase to run nosetests.
2021-11-19 10:11:25 +01:00
5d151c27b3
gnu: python-pytest-httpserver: Use GUIX_PYTHONPATH.
...
* gnu/packages/check.scm (python-pytest-httpserver)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
2021-11-19 10:11:19 +01:00
2a3ca2696b
gnu: Add r-desctools.
...
* gnu/packages/statistics.scm (r-desctools): New variable.
2021-11-19 10:05:08 +01:00
146ca5cd2f
gnu: Add r-exact.
...
* gnu/packages/statistics.scm (r-exact): New variable.
2021-11-19 10:05:08 +01:00
3199b96b2e
gnu: Add r-gld.
...
* gnu/packages/statistics.scm (r-gld): New variable.
2021-11-19 10:05:08 +01:00
6750e5a6e0
gnu: Add r-lmom.
...
* gnu/packages/statistics.scm (r-lmom): New variable.
2021-11-19 10:04:59 +01:00
59a22fcc91
gnu: emacs-modus-themes: Update to 1.7.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 1.7.0.
2021-11-19 09:51:13 +01:00
abc9a9b745
gnu: polkit: Fix elogind configuration.
...
* gnu/packages/patches/polkit-configure-elogind.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit): Use it.
2021-11-19 00:55:21 -05:00
188e3e2e68
gnu: ocaml4.07-merlin: Remove package.
...
* gnu/packages/ocaml.scm (ocaml4.07-merlin): Remove package.
2021-11-19 04:04:46 +01:00
9d662021ae
gnu: ocaml-jst-config: Update to 0.14.1.
...
* gnu/packages/ocaml.scm (ocaml-jst-config): Update to 0.14.1.
2021-11-19 04:03:45 +01:00
eb9fa94cca
gnu: ocaml-base: Update to 0.14.1.
...
* gnu/packages/ocaml.scm (ocaml-base): Update to 0.14.1.
2021-11-19 03:51:16 +01:00
78c930e617
gnu: ocaml-lwt-react: Update to 1.1.4.
...
* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.1.4.
2021-11-19 03:29:43 +01:00
4c8714d406
gnu: ocaml-lwt: Update to 5.4.2.
...
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.4.2.
2021-11-19 03:26:35 +01:00
fff3185995
gnu: dune: Update to 2.9.1.
...
* gnu/packages/ocaml.scm (dune): Update to 2.9.1.
2021-11-19 02:54:00 +01:00
794f5a05f7
gnu: linux-libre 5.4: Update to 5.4.160.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.160.
(linux-libre-5.4-pristine-source): Update hash.
2021-11-18 20:05:15 -05:00
2198d47723
gnu: linux-libre: Update to 5.14.19.
...
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.19.
(linux-libre-5.14-pristine-source, deblob-scripts-5.14): Update hashes.
2021-11-18 20:05:09 -05:00
2f1f2ac1e9
gnu: ocaml-alcotest: Update to 1.5.0.
...
* gnu/packages/ocaml.scm (ocaml-alcotest): Update to 1.5.0.
2021-11-19 00:29:53 +01:00
08326f3d62
gnu: Add gplates.
...
* gnu/packages/geo.scm (gplates): New variable.
2021-11-19 00:02:05 +01:00
5012281765
gnu: ocaml-ocp-index: Update to 1.3.2.
...
* gnu/packages/ocaml.scm (ocaml-ocp-index): Update to 1.3.2.
2021-11-18 23:48:50 +01:00
92d6f17dfd
gnu: Add shell2batch.
...
* gnu/packages/crates-io.scm (shell2batch): New variable.
* gnu/packages/patches/rust-shell2batch-lint-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 23:35:37 +01:00
a8eea7a51e
gnu: qtltools: Fix typo.
...
* gnu/packages/bioinformatics.scm (qtltools)[description]: Switch from "allows
to go" to "allows going".
2021-11-18 14:20:07 -08:00
b23d7aa880
gnu: r-bgeecall: Fix typo.
...
* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows
to generate" to "allows generating".
2021-11-18 14:20:03 -08:00
de0a3b578e
gnu: python-ueberzug: Fix typo.
...
* gnu/packages/python-xyz.scm (python-ueberzug)[description]: Use "draws"
instead of "allows to draw".
2021-11-18 14:19:59 -08:00
6fc80d9d4c
gnu: r-msfeatures: Fix typos.
...
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from
"allows to" to "can be used" and from "allows to aggregate" to "allows
aggregating".
2021-11-18 14:19:54 -08:00
dab4ce0104
gnu: mcg: Use GUIX_PYTHONPATH.
...
* gnu/packages/mpd.scm (mcg)[arguments]: Use GUIX_PYTHONPATH in the wrapper;
and remove trailing #T while we're at it.
2021-11-18 22:18:12 +00:00
b1acfb676a
gnu: ocaml-ssl: Update to 0.5.10.
...
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.10.
2021-11-18 23:17:08 +01:00
8362046a06
gnu: gnupg@2.2.32: Hide.
...
* gnu/packages/gnupg.scm (gnupg-2.2.32)[properties]: New field.
2021-11-18 22:21:31 +01:00
98d864e313
gnu: entangle: Build with Meson 0.59.
...
* gnu/packages/photo.scm (entangle)[arguments]: Pass #:meson.
2021-11-18 22:13:07 +01:00
427d95f7af
gnu: libdmapsharing: Build against libsoup 2.
...
* gnu/packages/gnome.scm (libdmapsharing)[propagated-inputs]: Change
LIBSOUP to LIBSOUP-MINIMAL-2.
2021-11-18 22:09:25 +01:00
ae716a4966
gnu: gthumb: Build with Meson 0.59.
...
* gnu/packages/gnome.scm (gthumb)[arguments]: Pass #:meson.
2021-11-18 22:00:02 +01:00
053ac3751e
gnu: terminator: Use GUIX_PYTHONPATH.
...
* gnu/packages/gnome.scm (terminator)[arguments]: Use GUIX_PYTHONPATH in
'wrap-program phase.
2021-11-18 19:34:20 +00:00
d6a970dbf6
gnu: terminator: Remove trailing #T.
...
* gnu/packages/gnome.scm (terminator)[arguments]: Remove trailing #T from
build phases.
2021-11-18 19:33:54 +00:00
dddc90a363
gnu: shorah: Use GUIX_PYTHONPATH in wrapper.
...
* gnu/packages/bioinformatics.scm (shorah)[arguments]: Wrap executable with
GUIX_PYTHONPATH.
2021-11-18 19:25:16 +00:00
dcc4028c0e
gnu: irrlicht: Update home-page.
...
* gnu/packages/games.scm (irrlicht)[home-page]: Update to new home-page.
2021-11-18 21:13:23 +02:00
2691864533
gnu: irrlicht: Fix build.
...
* gnu/packages/games.scm (irrlicht) [phase remove-<sys/systctl.h>]:
<sys/sysctl.h> has been removed from glibc, and it is not used, so remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-18 21:09:43 +02:00
675f324e12
gnu: python-tablib: Use GUIX_PYTHONPATH instead of PYTHONPATH.
...
* gnu/packages/python-xyz.scm (python-tablib)[arguments]: Use GUIX_PYTHONPATH
instead of PYTHONPATH in 'check phase.
2021-11-18 18:47:13 +00:00
fc3e4ef0db
gnu: gnome: Use at-spi2-core-minimal.
...
Fixes <https://issues.guix.gnu.org/51916 >.
Reported by Vivien Kraus <vivien@planete-kraus.eu>.
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Replace
at-spi2-core with at-spi2-core-minimal.
2021-11-18 12:11:53 -05:00
b41d3fa983
gnu: python-screenkey: Use GUIX_PYTHONPATH instead of PYTHONPATH.
...
* gnu/packages/python-xyz.scm (python-screenkey)[arguments]: Wrap with
GUIX_PYTHONPATH instead of PYTHONPATH.
2021-11-18 17:10:09 +00:00
a28667b76c
gnu: python-screenkey: Update description.
...
* gnu/packages/python-xyz.scm (python-screenkey)[description]: Extend to use a
complete sentence.
2021-11-18 17:09:10 +00:00
9d0c5f18e7
gnu: python-typer: Run tests conditionally.
...
* gnu/packages/python-xyz.scm (python-typer)[arguments]: Only run tests when
TESTS? is #true.
2021-11-18 17:01:21 +00:00
3b1cf6ab5e
gnu: python-typer: Use GUIX_PYTHONPATH instead of PYTHONPATH.
...
* gnu/packages/python-xyz.scm (python-typer)[arguments]: Use GUIX_PYTHONPATH
in 'check phase.
2021-11-18 17:01:21 +00:00
9e76a5b7cb
gnu: python-typer: Run more tests.
...
* gnu/packages/python-xyz.scm (python-typer)[arguments]: Delete phase
'disable-failing-tests; disable only test_show_completion and
test_install_completion in 'check phase; add phase 'patch-shell-reference.
2021-11-18 17:01:20 +00:00
28b92acf6b
gnu: enlightenment: Add missing input.
...
* gnu/packages/enlightenment.scm (enlightenment)[inputs]: Addd libdrm.
2021-11-18 17:58:13 +01:00
61576d5927
gnu: python-dbusmock: Patch reference to dbus-daemon.
...
* gnu/packages/python-xyz.scm (python-dbusmock)
[phases]{patch-shell-path}: Rename to...
{patch-paths}: ... this, and also patch the dbus-daemon reference.
2021-11-18 11:40:11 -05:00
416c706729
gnu: python-dbusmock: Update to 0.24.1.
...
* gnu/packages/python-xyz.scm (python-dbusmock): Update to 0.24.1.
2021-11-18 11:40:10 -05:00
4486870b1a
gnu: xorg-server-xwayland: Update to 21.1.3 and adjust package.
...
Xwayland is no longer part of the main X server distribution and now requires
Meson to build. This change also turn on EGL support, which was previously
disabled.
* gnu/packages/xorg.scm (xorg-server-xwayland): Do not inherit from
xorg-server. Update to 21.1.3.
[native-inputs]: New field.
[build-system]: Likewise.
[inputs]: Fully specify inputs, which are a subset of those of xorg-server.
[configure-flags]: Adjust for Meson.
[phases]{patch-/bin/sh}: New phase.
[description, home-page, license]: New fields.
2021-11-18 11:40:10 -05:00
6cec904665
gnu: egl-wayland: Update to 1.1.9.
...
* gnu/packages/xorg.scm (egl-wayland): Update to 1.1.9.
[native-inputs]: Add libglvnd and mesa-headers.
[inputs]: Add wayland-protocols.
2021-11-18 11:40:10 -05:00
0184192e24
gnu: Move eglexternalplatform and egl-wayland to (gnu packages xorg).
...
This is to avoid a module cycle between (gnu packages xorg) and (gnu packages
graphics).
* gnu/packages/graphics.scm (eglexternalplatform, egl-wayland): Move to...
* gnu/packages/xorg.scm: ... this file. Remove trailing #t.
2021-11-18 11:40:09 -05:00
87b4c66b72
gnu: xorg-server: Enable X security extensions (xcsecurity).
...
Fixes <https://issues.guix.gnu.org/23317 >.
* gnu/packages/xorg.scm (xorg-server)
[configure-flags]: Add --enable-xcsecurity.
2021-11-18 11:40:09 -05:00
5be685f554
gnu: xorg-server: Update to 21.1.1 and reinstate parallel tests.
...
* gnu/packages/xorg.scm (xorg-server): Update to 21.1.1.
[parallel-tests?]: Tentatively remove argument; added in 2015 without a
comment.
2021-11-18 11:40:09 -05:00
67f01c8d29
gnu: mesa: Update to 21.2.5.
...
* gnu/packages/gl.scm (mesa): Update to 21.2.5.
[phases]{fix-tests}: Remove phase.
2021-11-18 11:40:09 -05:00
b3e1f58f2e
gnu: libxkbfile: Propagate libx11 and kbproto.
...
* gnu/packages/xorg.scm (libxkbfile): Fix indentation.
[inputs]{libx11}: Move to...
[propagated-inputs]: ... here. Add kbproto.
2021-11-18 11:40:09 -05:00
79fce3f823
gnu: libinput: Update to 1.19.2.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.19.2.
2021-11-18 11:40:08 -05:00
235adaeec6
gnu: python-xlwt: Use GUIX_PYTHONPATH instead of PYTHONPATH.
...
* gnu/packages/python-xyz.scm (python-xlwt)[arguments]: Update 'check phase to
set GUIX_PYTHONPATH instead of PYTHONPATH.
2021-11-18 16:10:21 +00:00
156843609c
gnu: cling: Move next to llvm and clang.
...
Inheritance should happen within the same module.
* gnu/packages/cpp.scm (%cling, llvm-cling, clang-cling-runtime)
(clang-cling, cling): Move to...
* gnu/packages/llvm.scm: ... here. Use 'modify-inputs' instead of
'alist-replace'.
2021-11-18 16:51:13 +01:00
45a7de70b6
gnu: llvm-julia: Move next to llvm.
...
Inheritance should happen within the same module.
* gnu/packages/julia.scm (julia-patch): Make public.
(llvm-julia): Move to...
* gnu/packages/llvm.scm (llvm-julia): ... here.
2021-11-18 16:51:13 +01:00
cd1cbb6107
gnu: libuv-julia: Move next to libuv.
...
Inheritance should happen within the same module.
* gnu/packages/julia.scm (libuv-julia): Move to...
* gnu/packages/libevent.scm (libuv-julia): ... here.
2021-11-18 16:51:13 +01:00
674dbeb436
gnu: xf86-video-nouveau: Use upstream patch for xorg-server 21.1.
...
* gnu/packages/patches/xf86-video-nouveau-fixup-ABI.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xf86-video-nouveau): Use it.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-18 10:47:05 -05:00
5726411038
gnu: xf86-video-mach64: Patch to build with xorg-server 21.1.
...
* gnu/packages/patches/xf86-video-mach64-bool-to-boolean.patch: New
patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xf86-video-mach64): Use it.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-18 10:46:56 -05:00
adebc0c9fa
gnu: python2-virtualenv: Remove unnecessary build phase.
...
* gnu/packages/python-xyz.scm (python2-virtualenv)[arguments]: Remove field.
2021-11-18 15:35:09 +00:00
04893962f6
gnu: python-pymediainfo: Update description.
...
* gnu/packages/python-xyz.scm (python-pymediainfo)[description]: Extend it to
a complete sentence.
2021-11-18 15:30:58 +00:00
0525a3de76
gnu: python-pymediainfo: Simplify check phase.
...
* gnu/packages/python-xyz.scm (python-pymediainfo)[arguments]: Use
ADD-INSTALLED-PYTHONPATH instead of manipulating PYTHONPATH directly.
2021-11-18 15:30:20 +00:00
4b8bc321e1
gnu: python2-send2trash: Fix setenv build phase.
...
* gnu/packages/python-xyz.scm (python2-send2trash)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
2021-11-18 15:22:48 +00:00
ab22743ad4
gnu: gst-plugins-base: Disable the elements_appsrc test.
...
* gnu/packages/gstreamer.scm (gst-plugins-base): Remove trailing #t.
[phases]{disable-problematic-tests}: New phase.
2021-11-18 10:20:52 -05:00
749dec114f
gnu: sushi: Fix build by using libsoup@2.
...
* gnu/packages/gnome.scm (sushi)[inputs]: Replace webkitgtk with
webkitgtk-with-libsoup2.
2021-11-18 10:10:17 -05:00
9f94eb3d7b
gnu: cheese: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (cheese)[arguments]: Use meson-0.59.
2021-11-18 10:10:17 -05:00
ff7f928a10
gnu: gnome-shell: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Use meson-0.59.
2021-11-18 10:10:17 -05:00
17ebc4eebe
gnu: gnome-control-center: Fix build.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-control-center)
[arguments]: Use meson-0.59.
[inputs]: Replace libsoup with libsoup-minimal-2.
2021-11-18 10:10:17 -05:00
40372653d9
gnu: simple-scan: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (simple-scan)[arguments]: Use meson-0.59.
2021-11-18 10:10:16 -05:00
08806af6b1
gnu: colord: Enable Vala bindings.
...
* gnu/packages/gnome.scm (colord)[arguments]: Add "-Dvapi=true" to
[native-inputs]: Add vala.
2021-11-18 10:10:16 -05:00
6303c3c4fa
gnu: totem: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (totem)[arguments]: Use meson-0.59.
2021-11-18 10:10:16 -05:00
85fbf6d1fa
gnu: gnome-user-share: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-user-share)[arguments]: Use meson-0.59.
2021-11-18 10:10:16 -05:00
3f99ed39dc
gnu: gnome-initial-setup: Fix build.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-initial-setup)
[arguments]: Use meson-0.59.
[inputs]: Replace webkitgtk with webkitgtk-with-libsoup2.
2021-11-18 10:10:16 -05:00
0e2c8290d5
gnu: gnome-music: Fix build.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-music)[arguments]: Use meson-0.59.
[inputs]: Replace libsoup with libsoup-minimal-2.
2021-11-18 10:10:15 -05:00
49150b1493
gnu: gnome-photos: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-photos)[arguments]: Use meson-0.59.
2021-11-18 10:10:15 -05:00
836b6b654a
gnu: folks: Update to 0.15.3.
...
* gnu/packages/gnome.scm (folks): Update to 0.15.3.
2021-11-18 10:10:15 -05:00
589b71098f
gnu: grilo: Fix build by using libsoup@2.
...
* gnu/packages/gnome.scm (grilo)[inputs]: Replace libsoup with
libsoup-minimal-2.
2021-11-18 10:10:15 -05:00
7f9126b85b
gnu: gssdp: Use libsoup@2 and propagate it.
...
* gnu/packages/gnome.scm (gssdp)[inputs]: Remove libsoup.
[propagated-inputs]: Add libsoup-minimal-2.
2021-11-18 10:10:14 -05:00
66ff6f3718
gnu: evolution-data-server: Propagate libsoup@2.
...
All of the .pc files require version 2.
* gnu/packages/gnome.scm (evolution-data-server)
[propagated-inputs]: Replace libsoup with libsoup-minimal-2.
2021-11-18 10:10:14 -05:00
3904f33580
gnu: gedit: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gedit)[arguments]: Use meson-0.59.
2021-11-18 10:10:14 -05:00
4f67a94d14
gnu: gnome-disk-utility: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-disk-utility)
[arguments]: Use meson-0.59.
2021-11-18 10:10:14 -05:00
e13b18b26f
gnu: gnome-maps: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/geo.scm (gnome-maps)[arguments]: Use meson-0.59.
2021-11-18 10:10:14 -05:00
07170f6c49
gnu: gnome-weather: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-weather)[arguments]: Use meson-0.59.
2021-11-18 10:10:13 -05:00
c8fa0c46d4
gnu: gnome-font-viewer: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-font-viewer)[arguments]: Use meson-0.59.
2021-11-18 10:10:13 -05:00
dd5dbbfa58
gnu: gnome-characters: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (gnome-characters)[arguments]: Use meson-0.59.
2021-11-18 10:10:13 -05:00
4a77a70db0
gnu: eog: Build with Meson 0.59.
...
See <https://github.com/mesonbuild/meson/issues/9441 >.
* gnu/packages/gnome.scm (eog)[arguments]: Use meson-0.59.
2021-11-18 10:10:08 -05:00
2b3046beca
gnu: python-graphene: Update to 3.0.
...
Fixes <https://issues.guix.gnu.org/50947 >.
Reported by John Kehayias <john.kehayias@protonmail.com>.
* gnu/packages/python-xyz.scm (python-graphene): Update to 3.0.
[propagated-inputs]: Replace "python-iso8601" by "python-aniso8601".
2021-11-18 15:40:57 +01:00
f8119cb514
gnu: python-aniso8601: Update to 9.0.1.
...
* gnu/packages/time.scm (python-aniso8601): Update to 9.0.1.
[propagated-inputs]: Remove.
2021-11-18 15:40:34 +01:00
62b93a5c9f
gnu: appstream: Link against libsoup 2.
...
This version of AppStream fails to build against libsoup 3.x.
* gnu/packages/freedesktop.scm (appstream)[inputs]: Replace LIBSOUP by
LIBSOUP-MINIMAL-2.
2021-11-18 15:38:32 +01:00
53d5d66378
gnu: ocaml-dose3: Remove now unneeded phase.
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This reverts commit 91b29aa373
2021-11-18 15:08:33 +01:00
9502c56bfb
gnu: gnome-builder: Upgrade to 41.2.
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* gnu/packages/gnome.scm: Import modules llvm and markup for gnome-builder.
(gnome-builder): Upgrade to 41.2.
[arguments]: Add #:glib-or-gtk? #t to compile the schemas.
[configure-flags]: Enable more plugins.
[phase patch-meson]: Pretend we’re building with webkit2gtk-4.1.
[inputs]: Add cmark (markup support), clang and llvm, devhelp, glade,
libportal and libsoup 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:46:49 +01:00
ee98739c83
gnu: sysprof: Upgrade to 3.42.1.
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* gnu/packages/gnome.scm (sysprof): Upgrade to 3.42.1.
[propagated-inputs]: Add polkit.
[inputs]: Add json-glib.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:46:46 +01:00
e8b2b11b01
gnu: devhelp: Add missing propagated input.
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* gnu/packages/gnome.scm (devhelp) [propagated-inputs]: Add
gsettings-desktop-schemas.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:43:49 +01:00
93b2ce1197
gnu: r-tximeta: Update to 1.12.3.
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* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
2021-11-18 13:18:01 +00:00
6a5e5bb9e2
gnu: r-biodb: Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
2021-11-18 13:18:01 +00:00
13f8140290
gnu: r-chromstar: Update to 1.20.2.
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* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
2021-11-18 13:18:00 +00:00
34d17d5f62
gnu: r-scran: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
2021-11-18 13:18:00 +00:00
0f72bdada5
gnu: r-hdf5array: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
2021-11-18 13:18:00 +00:00
ddb9d228b4
gnu: r-s4vectors: Update to 0.32.2.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
2021-11-18 13:18:00 +00:00
ef5bbc3416
gnu: r-biocset: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
2021-11-18 13:18:00 +00:00
3cfeeace83
gnu: r-biocpkgtools: Update to 1.12.2.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
2021-11-18 13:17:59 +00:00
6350413325
gnu: r-mixomics: Update to 6.18.0.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
2021-11-18 13:17:59 +00:00
a03c84244d
gnu: r-rsubread: Update to 2.8.1.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
2021-11-18 13:17:59 +00:00
d30d9c6001
gnu: r-geoquery: Update to 2.62.1.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1.
[propagated-inputs]: Add r-r-utils.
2021-11-18 13:17:59 +00:00
f4b108d872
gnu: r-icobra: Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
2021-11-18 13:17:58 +00:00
7e9a13d789
gnu: r-ggtree: Update to 3.2.1.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
2021-11-18 13:17:58 +00:00
e52eb93765
gnu: r-treeio: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
2021-11-18 13:17:58 +00:00
34ba8b256b
gnu: r-systempiper: Update to 2.0.1.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
2021-11-18 13:17:58 +00:00
6b1375d3af
gnu: r-msnbase: Update to 2.20.1.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
2021-11-18 13:17:58 +00:00
f917fa4e50
gnu: r-ensembldb: Update to 2.18.2.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
2021-11-18 13:17:57 +00:00
30038c5738
gnu: r-chipseeker: Update to 1.30.2.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
2021-11-18 13:17:57 +00:00
443ed83bc3
gnu: r-annotationdbi: Update to 1.56.2.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
2021-11-18 13:17:57 +00:00
b0eaa4f2d7
gnu: strace: Allow readlink, readlinkat tests to pass.
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Modify the invocation of strace's "readlink" and "readlinkat" tests to prevent
them from failing due to an additional system call made by Guix's patched
version of glibc.
* gnu/packages/linux.scm (strace)[source]: Add patch.
[arguments]<#:phases>: Do not disable the "readlink" test now that it can
succeed.
* gnu/packages/patches/strace-readlink-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:11:43 +01:00
696b0a3246
gnu: qgpgme: Use 'modify-inputs'.
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* gnu/packages/gnupg.scm (qgpgme)[inputs]: Use 'modify-inputs'.
2021-11-18 12:47:49 +01:00
ffcf4ea9ab
gnu: qgpgme: Depend on a newer GnuPG.
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This addresses a test failure in 'testSymmetricEncryptDecrypt':
FAIL! : EncryptionTest::testSymmetricEncryptDecrypt() 'QString::fromUtf8(plainText) == QStringLiteral("Hello symmetric World")' returned FALSE. ()
Loc: [t-encrypt.cpp(188)]
The failure was apparently due to gpg asking for a passphrase for
symmetric decryption.
* gnu/packages/gnupg.scm (gnupg-2.2.32): New variable.
(qgpgme)[native-inputs]: Use it.
2021-11-18 12:38:58 +01:00
1db174a3ad
gnu: ghc: Rely on a fixed version of Git.
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This makes the derivation of ghc equivalent to that found in
e55547bf70
2021-11-18 11:39:40 +01:00
d28a28ff53
gnu: sbcl-cl-webkit: Update to 3.4.0.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.4.0, bringing in
support for libwebkit2gtk-4.1 from webkit 2.34.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 09:58:49 +01:00
9322b4d30d
gnu: gnome-screenshot: Fix build with Meson 0.60.0.
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* gnu/packages/patches/gnome-screenshot-meson-0.60.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-screenshot)[patches]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 09:53:16 +01:00
039c3848c3
gnu: wireshark: Update to 3.4.10.
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* gnu/packages/networking.scm (wireshark): Update to 3.4.10.
2021-11-18 09:18:41 +01:00
f4aa543f74
gnu: emacs-elfeed-score: Update to 1.2.0.
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* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.0.
2021-11-18 09:13:22 +01:00
7537ec816f
gnu: coq-stdpp: Adjust '#:make-flags'.
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* gnu/packages/coq.scm (coq-stdpp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:30:41 +01:00
4423caece6
gnu: coq-equations: Adjust '#:make-flags'.
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* gnu/packages/coq.scm (coq-equations)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:25:38 +01:00
5d7d64ff85
gnu: coq-autosubst: Adjust '#:make-flags'.
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* gnu/packages/coq.scm (coq-autosubst)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:22:21 +01:00
7b93c6d777
gnu: coq-mathcomp: Adjust '#:make-flags'.
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* gnu/packages/coq.scm (coq-mathcomp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:08:08 +01:00
2d60af4d6d
gnu: Add coq-semantics.
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* gnu/packages/coq.scm (coq-semantics): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:08:00 +01:00
e930d4a747
gnu: perl-tie-handle-offset: Fix typo.
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* gnu/packages/perl.scm (perl-tie-handle-offset)[description]: Fix "This
module" typo.
2021-11-17 17:46:13 -08:00
67900b9555
gnu: perl-business-ismn: Fix typo.
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* gnu/packages/perl.scm (perl-business-ismn)[description]: Fix "This module"
typo.
2021-11-17 17:46:05 -08:00
e52032ac1d
gnu: perl-business-issn: Fix typo.
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* gnu/packages/perl.scm (perl-business-issn)[description]: Fix "This module"
typo.
2021-11-17 17:46:01 -08:00
f4f93b38aa
gnu: perl-business-isbn: Fix typo.
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* gnu/packages/perl.scm (perl-business-isbn)[description]: Fix "This module"
typo.
2021-11-17 17:45:53 -08:00
8f6ac12fe4
gnu: perl-test-dir: Fix typo.
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* gnu/packages/perl-check.scm (perl-test-dir)[description]: Fix "This module"
typo.
2021-11-17 17:45:49 -08:00
e782bb901b
gnu: python-sgmllib3k: Fix typo.
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* gnu/packages/python-xyz.scm (python-sgmllib3k)[description]: Fix "This
package" typo.
2021-11-17 17:45:45 -08:00
fb1cd494d7
gnu: rust-fever-api-0.2: Fix typo.
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* gnu/packages/crates-io.scm (rust-fever-api-0.2)[description]: Fix "This
package" typo.
2021-11-17 17:45:38 -08:00
747403aca5
gnu: perl-test-nowarnings: Fix typo.
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* gnu/packages/perl-check.scm (perl-test-nowarnings)[description]: Fix "This
module" typo.
2021-11-17 17:45:21 -08:00
407594d21b
gnu: foo2zjs: Use archived home page.
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* gnu/packages/cups.scm (foo2zjs)[home-page]: Link to the Web Archive'd
URL.
2021-11-18 01:12:21 +01:00
90c524c94e
gnu: sg3-utils: Omit static library.
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* gnu/packages/scsi.scm (sg3-utils)[arguments]: Add "--disable-static"
to #:configure-flags.
2021-11-18 01:12:15 +01:00
f41fbda9db
gnu: sg3-utils: Update to 1.47.
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* gnu/packages/scsi.scm (sg3-utils): Update to 1.47.
2021-11-18 01:08:30 +01:00
cdb0e04a76
gnu: python-sgmllib3k: Remove redundant definition.
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* gnu/packages/python-xyz.scm (python-sgmllib3k): Adjust description and
remove same-named definition that provided version 1.0.0.
2021-11-18 00:00:16 +01:00
669d150f48
gnu: graphene: Depend on a fixed version of 'git-minimal'.
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* gnu/packages/version-control.scm (git-minimal/fixed): New variable.
* gnu/packages/gtk.scm (graphene)[native-inputs]: Use it instead of
GIT-MINIMAL.
2021-11-17 23:59:09 +01:00
e3f70c947f
gnu: ungoogled-chromium: Update to 96.0.4664.45-0.
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* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M96.
(%chromium-version): Set to 96.0.4664.45.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-11-17 23:57:52 +01:00
b432cd1189
gnu: libtorrent-rasterbar: Update to 1.2.14.
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* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.2.14.
[source](uri): Adjust tag name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly. Override the check phase to fake the time
for one test, and disable another.
[native-inputs]: Add LIBFAKETIME.
2021-11-17 23:57:52 +01:00
e77df67cc2
gnu: libsoup: Depend on a fixed version of Samba.
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This avoids big rebuilds when Samba is upgraded.
* gnu/packages/samba.scm (samba/fixed): New variable.
* gnu/packages/gnome.scm (libsoup-minimal)[inputs]: Use it instead of
SAMBA.
2021-11-17 23:57:49 +01:00
3a317f7476
Merge branch 'master' into core-updates-frozen
2021-11-17 23:43:14 +01:00
94fbcf7b78
gnu: Add rcs-blame.
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* gnu/packages/version-control.scm (rcs-blame): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:59 +01:00
b737607c54
gnu: rcs: Install rcsfreeze.
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* gnu/packages/version-control.scm (rcs): Install rcsfreeze.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
7c4142628a
gnu: system: Improve location of some configuration warnings.
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* gnu/bootloader.scm (%warn-target-field-deprecation): Remove it.
* gnu/bootloader.scm (warn-target-field-deprecation): Use
define-with-syntax-properties.
* gnu/system.scm (ensure-setuid-program-list): Ditto. Also rename the
'location' variable to 'properties'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
cb768f3860
gnu: tidy-html: Update to 5.8.0.
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* gnu/packages/web.scm (tidy-html): Update to 5.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
609066e996
gnu: xfce4-whiskermenu-plugin: Update to 2.6.1.
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* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
7fe5742e03
gnu: ristretto: Update to 0.12.0.
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* gnu/packages/xfce.scm (ristretto): Update to 0.12.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
538a755341
gnu: xfce4-cpugraph-plugin: Update to 1.2.5.
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* gnu/packages/xfce.scm (xfce4-cpugraph-plugin): Update to 1.2.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
5a6af48408
gnu: shellcheck: Update to 0.8.0.
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* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
77483d6b61
gnu: perl-inline-c: Patch paths to ‘make’.
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* gnu/packages/perl.scm (perl-inline-c)[arguments]<#:phases>{patch-paths}: New
phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
4ace645506
services: docker: Add 'environment-variables' configuration field.
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* gnu/services/docker.scm (docker-configuration): Add the field
(docker-shepherd-service): Pass the list of defined variables to
make-forkexec-constructor.
* doc/guix.texi (Miscellaneous Services): Update doc.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:56 +01:00
6bffa13040
gnu: perl-log-message: Fix typo.
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* gnu/packages/perl.scm (perl-log-message)[description]: Correctly use "lets
you".
2021-11-17 13:29:35 -08:00
ee98b30a69
gnu: emacs-eldev: Update to 0.10.
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* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 0.10.
[arguments]: Enable some tests, disable some others. Remove #t at the end of phases.
2021-11-17 22:12:26 +01:00
b066c9b03d
gnu: home: services: Fix typo.
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* gnu/home/services.scm (compute-on-first-login-script): Fix spelling of
"appropriate".
2021-11-17 12:55:24 -08:00
30474f25d0
gnu: python-numcodecs: Unbundle c-blosc.
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* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to
remove bundled c-blosc sources and pre-built Cython files.
[arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase
to run pytest; disable tests.
[inputs]: Add c-blosc, lz4, zlib, and zstd.
[native-inputs]: Add python-cython.
2021-11-17 20:45:58 +00:00
7850856591
gnu: c-blosc: Build with external libraries and without AVX2.
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* gnu/packages/compression.scm (c-blosc)[inputs]: Add lz4, snappy, zlib, and
zstd.
[arguments]: Disable building with AVX2 instructions; prefer our compression
packages over bundled sources.
2021-11-17 20:45:54 +00:00
e55547bf70
gnu: pdfpc: Replace webkitgtk with webkitgtk-with-libsoup2.
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* gnu/packages/pdf.scm (pdfpc)[inputs]: Replace webkitgtk with
webkitgtk-with-libsoup2.
2021-11-17 17:56:18 +00:00
41c8ee1b50
gnu: font-adobe-source-code-pro: Update to 2.032R-ro-1.052R-it-1.012R-VAR.
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* gnu/packages/fonts (font-adobe-source-code-pro): Update to
2.032R-ro-1.052R-it-1.012R-VAR.
[commit]: Adjust version rewriting regexp accordingly.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-17 18:11:40 +01:00
948137b62a
gnu: Add emacs-vala-mode.
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* gnu/packages/emacs-xyz (emacs-vala-mode): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-17 18:01:19 +01:00
94b76dc85c
gnu: vigra: Build without numpy support.
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* gnu/packages/image.scm (vigra)[inputs]: Remove python-numpy.
[arguments]: Add configure-flag to build without vigranumpy.
2021-11-17 17:50:04 +02:00
Julien Lepiller
Ricardo Wurmus
Maxim Cournoyer
Foo Chuan Wei
Ekaitz Zarraga
Nicolas Goaziou
Josselin Poiret
Ludovic Courtès
Arun Isaac
jgart
Vivien Kraus
Jelle Licht
Pierre Neidhardt
Lars-Dominik Braun
Timothy Sample
Leo Famulari
Jacob Hrbek
Vagrant Cascadian
Efraim Flashner
Guillaume Le Vaillant
Simon South
Kaelyn Takata
Jack Hill
zimoun
Tobias Geerinckx-Rice
Marius Bakke
Philip McGrath
Michael Rohleder
Xinglu Chen
Alexey Abramov
phodina