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94573 Commits (9d7c65735c2f0d3f791e0352d6e1dcc165a8c357)

Author SHA1 Message Date
Daniel Meißner 2a70e7922c
gnu: xmonad-next: Change #:phases to gexp.
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name
and #$synopsis instead of %output, name and synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05 20:41:39 +02:00
Ricardo Wurmus 66177c2b87
Merge branch 'wip-pyyaml' 2022-04-05 19:03:57 +02:00
Ricardo Wurmus df2dc0c416
gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR.
This is needed since the update of python-loompy.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename
'set-PYTHONPATH to 'set-additional-environment-variables and set
NUMBA_CACHE_DIR.
2022-04-05 18:40:48 +02:00
Ricardo Wurmus e721122069
gnu: pigx-scrnaseq: Use new inputs style.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list.
2022-04-05 18:40:48 +02:00
Ricardo Wurmus 5d1c9fcdcf
gnu: pigx-scrnaseq: Update to 1.1.8.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8.
[patches]: Remove.
[native-inputs]: Remove.
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-04-05 18:40:48 +02:00
Florian Pelz 029cb8c95f
news: Add 'de' translation.
* etc/news.scm: Add German translation of 'guix shell --export-manifest' entry.
2022-04-05 16:28:48 +02:00
Ricardo Wurmus 860010ac2a
gnu: r-with-tests: Update to 4.1.3.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3.
2022-04-05 15:14:41 +02:00
Greg Hogan 78e8c20179
gnu: git: Update to 2.35.1.
* gnu/packages/version-control.scm (git): Update to 2.35.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-05 08:48:47 -04:00
Maxim Cournoyer 8a9bf794e1
Revert "gnu: git: Update to 2.35.1."
This reverts commit 223a3d7f7f, as it triggered
thousands of rebuilds due to inadvertently touching git-minimal/fixed.

Reported-by: Christopher Baines <mail@cbaines.net>
2022-04-05 08:41:36 -04:00
Ricardo Wurmus 27720d0fe1
gnu: python-pyyaml: Update to 6.0.
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.
2022-04-05 10:56:28 +02:00
Ricardo Wurmus d3e1a94391
gnu: python2-pyyaml: Detach source from python-pyyaml.
* gnu/packages/python-xyz.scm (python2-pyyaml): Override source and version
fields.
(python-pyyaml)[properties]: Add python2-variant.
2022-04-05 10:56:23 +02:00
Leo Famulari 20303c0b1c
gnu: eyeD3: Update to 0.9.6.
* gnu/packages/mp3.scm (eyed3): Update to 0.9.6.
[propagated-inputs]: Add python-deprecation and python-filetype.
2022-04-04 19:57:12 -04:00
Ludovic Courtès b1e7e64f35
news: Add entry about 'guix shell --export-manifest'.
* etc/news.scm: Add entry.
2022-04-04 23:12:07 +02:00
Ludovic Courtès c42b7baf13
shell: Add '--export-manifest'.
* guix/scripts/shell.scm (show-help, %options): Add '--export-manifest'.
(manifest-entry-version-prefix, manifest->code*)
(export-manifest): New procedures.
(guix-shell): Honor '--export-manifest'.
* tests/guix-shell-export-manifest.sh: New file.
* Makefile.am (SH_TESTS): Add it.
* doc/guix.texi (Invoking guix shell): Document '--export-manifest'.
(Invoking guix environment): Link to it.
(Invoking guix pack): Likewise.
2022-04-04 22:58:04 +02:00
Ludovic Courtès 6fed836a6f
environment: Export 'load-manifest'.
* guix/scripts/environment.scm (load-manifest): New procedure.
(options/resolve-packages): Use it.
2022-04-04 22:58:03 +02:00
Ludovic Courtès f54f2aa9df
packages: Add 'package-unique-version-prefix'.
* gnu/packages.scm (package-unique-version-prefix): New procedure.
* guix/scripts/package.scm (manifest-entry-version-prefix): Use it.
* tests/packages.scm ("package-unique-version-prefix, gcc@8")
("package-unique-version-prefix, grep"): New tests.
2022-04-04 22:58:03 +02:00
Feng Shu 4b451813f7
gnu: Add parole.
* gnu/packages/xfce.scm (parole): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:03 +02:00
Ludovic Courtès e692dc632c
services: Add 'log-cleanup' service to '%base-services' for build logs.
* gnu/services/base.scm (%base-services): Add 'log-cleanup-service-type'
instance.
* doc/guix.texi (Log Rotation): Add example and mention '%base-services'.
2022-04-04 22:58:03 +02:00
Ludovic Courtès 3b9b3b4931
services: Add 'log-cleanup-service-type'.
* gnu/services/admin.scm (<log-cleanup-configuration>): New record
type.
(log-cleanup-program, log-cleanup-mcron-jobs): New procedures.
(log-cleanup-service-type): New variable.
* doc/guix.texi (Log Rotation): Document it.
2022-04-04 22:58:03 +02:00
kiasoc5 2bef31fe25
gnu: mediainfo: Update to 22.03.
* gnu/packages/video.scm (mediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:03 +02:00
kiasoc5 f9ad9d65fe
gnu: libmediainfo: Update to 22.03.
* gnu/packages/video.scm (libmediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:02 +02:00
Zhu Zihao 095c609dfd
gnu: gtkmm: Update to 4.6.1.
* gnu/packages/gtk.scm (gtkmm): Update to 4.6.1.
[propagated-inputs]: Remove atkmm because it's no longer needed.
* gnu/packages/gtk.scm (pangomm): Update to 2.50.0.
[propagated-inputs]: Replace 'pango' with 'pango-next'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:02 +02:00
Zhu Zihao 287b98031f
gnu: Add fcitx5-gtk4.
* gnu/packages/fcitx5.scm (fcitx5-gtk4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:02 +02:00
Zhu Zihao ef3cae59a2
gnu: gtk: Update to 4.6.1.
* gnu/local.mk (dist_patch_DATA): Remove gtk-introspection-test.patch.
* gnu/packages/patches/gtk-introspection-test.patch: Remove.
* gnu/packages/gtk.scm (gtk): Update to 4.6.1.
[source]: Remove stale patch.
[arguments]<phases>: Add 'patch-rst2man' phase, correct the binary name of
rst2man to 'rst2man.py'
[inputs]: Add libjpeg-turbo, libpng, libtiff.
[native-inputs]: Add python-docutils.
[propagated-inputs]: Use pango-next.
* gnu/packages/fcitx5.scm (fcitx5-gtk)[arguments]: Disable GTK4 build.
<configure-flags>: Add "-DENABLE_GTK_IM_MODULE=OFF".
<phases>: In phase "patch-install-prefix", Remove GTK4 code.
[inputs]: Remove package gtk.
[outputs]: Remove output "gtk4".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:02 +02:00
Zhu Zihao 4df7fe14ff
gnu: pango 1.50: Add version 1.50.4.
* gnu/packages/gtk.scm(pango-next): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04 22:58:02 +02:00
Efraim Flashner 345f79b2cf
gnu: freebayes: Fix test suite.
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Add python.
2022-04-04 22:58:25 +03:00
Efraim Flashner c1fc65ecb6
gnu: smithwaterman: Use new style for phases.
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Use list
of G-Expressions.
2022-04-04 22:45:37 +03:00
Efraim Flashner 855c8d9d41
gnu: smithwaterman: Fix cross-compiling.
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add
make-flag to use cxx-for-target. Adjust custom 'patch-source and
'build-dynamic phases to use cross toolchain binaries when cross
compiling. Remove trailing #t from phases.
2022-04-04 22:41:54 +03:00
Michael Rohleder 9bd4ed3dde
gnu: marble-qt: Update to 21.12.3.
* gnu/packages/kde.scm (marble-qt): Update to 21.12.3.
  [inputs]: Add qtwebchannel, qtwebengine.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-04 10:50:21 +02:00
Mădălin Ionel Patrașcu 2213c60419
gnu: Add r-zoeppritz.
* gnu/packages/cran.scm (r-zoeppritz): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-04 10:44:47 +02:00
Attila Lendvai 4d336ecf20
gnu: Add python-bip39.
* gnu/packages/python-xyz.scm (python-bip39): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-04 10:32:01 +02:00
Efraim Flashner aed1f47c4d
gnu: parallel: Update to 20220322.
* gnu/packages/parallel.scm (parallel): Update to 20220322.
2022-04-04 09:28:22 +03:00
Greg Hogan 367048036d
gnu: stgit: Update to 1.5.
* gnu/packages/version-control.scm (stgit): Update to 1.5.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-04 00:10:07 -04:00
Maxim Cournoyer 223a3d7f7f
gnu: git: Update to 2.35.1.
* gnu/packages/version-control.scm (git): Update to 2.35.1.
[phases]: Delete trailing #t.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-04 00:06:48 -04:00
jgart 757ececffb
gnu: emacs-elpy: Update to 1746e70.
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1746e70.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-04 00:06:32 -04:00
jgart 48d3a372fc
gnu: emacs-poet-theme: Update to 16eb694.
* gnu/packages/emacs-xyz.scm (emacs-poet-theme): Update to 16eb694.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-04 00:06:32 -04:00
Maxim Cournoyer eb4e8a4d9c
gnu: emacs-gnugo: Patch 'gnugo-program' variable.
* gnu/packages/emacs-xyz.scm (emacs-gnugo)
[phases]{configure-default-gnugo-xpms-variable}: Rename to...
{configure}: ... this.  Patch the 'gnugo-program' variable.
[inputs]: Add gnugo.
[description]: Describe basic usage entry points.
2022-04-04 00:06:31 -04:00
Maxim Cournoyer 360e2eb3ac
build: emacs-utils: Add a (as-display) subform to `emacs-substitute-variables'.
* guix/build/emacs-utils.scm (as-display): New variable.
(replacement-helper): New syntax helper.
(emacs-substitute-sexps): Use it and update doc.
(emacs-substitute-variables): Add an optional 'modifier' datum to the
replacement specification, and document it.
2022-04-04 00:06:31 -04:00
Maxim Cournoyer bfe66d4a2a
import: pypi: Use new style for the conditional unzip input.
* guix/import/pypi.scm (make-pypi-sexp)<unzip>: Use new style.
2022-04-04 00:06:31 -04:00
Leo Famulari 32b713e016
gnu: svt-av1: Update to 0.9.1.
* gnu/packages/video.scm (svt-av1): Update to 0.9.1.
2022-04-03 23:09:39 -04:00
Leo Famulari 7c94eea790
gnu: libaom: Update to 3.3.0.
* gnu/packages/video.scm (libaom): Update to 3.3.0.
2022-04-03 23:09:35 -04:00
Leo Famulari 6ed308bb3c
gnu: linux-libre 4.14: Update to 4.14.275.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.275.
(linux-libre-4.14-pristine-source): Update hash.
2022-04-03 13:04:58 -04:00
Danny Milosavljevic 32d1f71593
gnu: xterm: Make big cursors work.
* gnu/packages/patches/xterm-370-explicit-xcursor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xterm)[source]: Add it.
[arguments]<#:configure-flags>: Add "-lXcursor".
2022-04-03 13:46:15 +02:00
Efraim Flashner b0ea8808b6
gnu: cpufrequtils: Set file-name for source.
* gnu/packages/linux.scm (cpufrequtils)[source]: Add file-name field.
2022-04-03 14:10:12 +03:00
Efraim Flashner bb5e79ca43
gnu: rust-combine-4: Update to 4.6.3.
* gnu/packages/crates-io.scm (rust-combine-4): Update to 4.6.3.
[arguments]<cargo-inputs>: Add rust-futures-core-0.3,
rust-tokio-util-0.6. Remove rust-futures-util-0.3.
2022-04-03 14:07:52 +03:00
Efraim Flashner ae6216d2f8
gnu: rust-shlex-1: Update to 1.1.0.
* gnu/packages/crates-io.scm (rust-shlex-1): Update to 1.1.0.
2022-04-03 14:07:52 +03:00
Efraim Flashner 8a7f8d3759
gnu: rust-hyphenation-0.8: Update to 0.8.4.
* gnu/packages/crates-io.scm (rust-hyphenation-0.8): Update to 0.8.4.
[arguments]: Don't skip build.
<cargo-inputs>: Remove duplicate entries.
<cargo-development-inputs>: New field. Add rust-criterion-0.3,
rust-once-cell-1, rust-quickcheck-1, rust-unicode-segmentation-1.
(rust-hyphenation-commons-0.8): Update to 0.8.4.
[arguments]: Don't skip build.
2022-04-03 14:07:52 +03:00
Efraim Flashner 66f87ac273
gnu: rust-fsv-0.4: Update to 0.4.7.
* gnu/packages/crates-io.scm (rust-fsv-0.4): Update to 0.4.7.
[arguments]: Don't skip build.
<cargo-development-inputs>: New field. Add rust-doc-comment-0.3,
rust-fnv-1, rust-memmap-0.7, rust-quickcheck-0.9, rust-rand-0.7.
2022-04-03 14:07:51 +03:00
Efraim Flashner 2703daf6eb
gnu: rust-criterion-0.3: Update to 0.3.5.
* gnu/packages/crates-io.scm (rust-criterion-0.3): Update to 0.3.5.
[arguments]<cargo-inputs>: Replace rust-approx-0.4 with 0.5,
rust-quickcheck-0.9 with 1.
2022-04-03 14:07:51 +03:00
Efraim Flashner 17214a65d8
gnu: rust-criterion-plot-0.4: Update to 0.4.4.
* gnu/packages/crates-io.scm (rust-criterion-plot-0.4): Update to 0.4.4.
[arguments]<cargo-inputs>: Replace rust-itertools-0.9 with 0.10.
2022-04-03 14:07:50 +03:00