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Author SHA1 Message Date
Tobias Geerinckx-Rice 9e632a5554
gnu: isc-dhcp: Update to 4.4.2-P1 [fixes CVE-2021-25217].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.2-P1.
2021-05-29 16:09:48 +02:00
Tobias Geerinckx-Rice 947398c70a
gnu: emacs: Support console mice.
* gnu/packages/emacs.scm (emacs)[inputs]: Add gpm.
2021-05-29 16:09:48 +02:00
Tobias Geerinckx-Rice 38e8ffe255
gnu: mc: Order inputs alphabetically.
* gnu/packages/mc.scm (mc)[native-inputs, inputs]: Order alphabetically.
2021-05-29 16:09:48 +02:00
Tobias Geerinckx-Rice 11e4ccc6fb
Sort module imports in (gnu packages mc).
* gnu/packages/mc.scm: Order module imports alphabetically.
2021-05-29 16:09:48 +02:00
Tobias Geerinckx-Rice ef5c6f9097
gnu: mc: Support mice.
* gnu/packages/mc.scm (mc)[inputs]: Add gpm.
2021-05-29 16:09:48 +02:00
Mathieu Othacehe 6e1cf434d7
gnu: cuirass: Update to 1.0.0-23.58e3551.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-23.58e3551.
2021-05-29 15:58:56 +02:00
Ricardo Wurmus e3cde9aaf8
gnu: Add mosaicatcher.
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-29 07:26:15 +02:00
Ricardo Wurmus 64907645ec
gnu: nyacc: Update to 1.04.0.
* gnu/packages/mes.scm (nyacc): Update to 1.04.0.
2021-05-29 07:23:04 +02:00
Christopher Baines 6417b97c7e
Revert "gnu: Add mosaicatcher."
mosaicatcher-unbundle-htslib.patch is missing.

This reverts commit b1ae0f30d8.
2021-05-29 01:21:14 +01:00
Nicolas Goaziou 12489ee005
gnu: emacs-cwl-mode: Update to 0.2.6.
* gnu/packages/emacs-xyz.scm (emacs-cwl-mode): Update to 0.2.6.
2021-05-29 00:05:23 +02:00
Nicolas Goaziou a37159c036
gnu: emacs-csharp-mode: Update to 0.11.0.
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.11.0.
2021-05-29 00:04:00 +02:00
Nicolas Goaziou f95a062f95
gnu: emacs-counsel-jq: Update to 1.1.
* gnu/packages/emacs-xyz.scm (emacs-counsel-jq): Update to 1.1.
2021-05-29 00:02:36 +02:00
Nicolas Goaziou c8fc1e4f7a
gnu: emacs-cider: Update to 1.1.1.
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.1.1.
2021-05-28 23:42:31 +02:00
Nicolas Goaziou c6499461da
gnu: emacs-chronometrist: Update to 0.7.0.
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.7.0.
2021-05-28 23:40:33 +02:00
Nicolas Goaziou 6860b15257
gnu: emacs-auto-sudoedit: Update to 1.1.0.
* gnu/packages/emacs-xyz.scm (emacs-auto-sudoedit): Update to 1.1.0.
2021-05-28 23:37:21 +02:00
Nicolas Goaziou 63ee921527
gnu: emacs-amx: Update to 3.4.
* gnu/packages/emacs-xyz.scm (emacs-amx): Update to 3.4.
2021-05-28 23:35:41 +02:00
Ludovic Courtès cefa260fb4
gnu: xjobs: Add 'release-monitoring-url' property.
* gnu/packages/parallel.scm (xjobs)[properties]: New field.
2021-05-28 23:04:44 +02:00
Stefan Reichör 9d439e3ba0
gnu: Add xjobs.
* gnu/packages/parallel.scm (xjobs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 23:04:44 +02:00
Ludovic Courtès ca1caf9cf1
gnu: hostscope: Add 'release-monitoring-url' property.
* gnu/packages/monitoring.scm (hostscope)[properties]: New field.
2021-05-28 23:04:44 +02:00
Stefan Reichör 803be0975d
gnu: Add hostscope.
* gnu/packages/monitoring.scm (hostscope): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 23:04:44 +02:00
Stefan Reichör 02f6144344
gnu: Add mbuffer.
* gnu/packages/networking.scm (mbuffer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 23:04:44 +02:00
Eric Brown 30713c2c2a
gnu: ipopt: Update to 3.13.4
* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL.
[license]: Change to LICENSE:EPL2.0.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 23:04:43 +02:00
Eric Brown f5871b19cc
gnu: Add cbc.
* gnu/packages/maths.scm (cbc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 23:04:43 +02:00
Ricardo Wurmus b1ae0f30d8
gnu: Add mosaicatcher.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-28 23:00:47 +02:00
Solene Rapenne 0b70eb03cb
gnu: gnutls: Replace with 3.6.16 [fixes CVE-2021-20305].
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls-3.6.16): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-28 14:55:59 -04:00
Maxim Cournoyer 4ec964ec38
gnu: jami-gnome: Include phases from the glib-or-gtk-build-system.
This makes Jami less dependent on the environment it is run within; for
example when using Jami on a foreign distributions.

* gnu/packages/jami.scm (jami-gnome)[imported-modules]: New argument.
[modules]: New argument.
[phases]{glib-or-gtk-compile-schemas, glib-or-gtk-wrap}: New phases.

Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
2021-05-28 09:48:15 -04:00
Mathieu Othacehe 45b98751ff
gnu: cuirass: Update to 1.0.0-22.3ac739b.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-22.3ac739b.
2021-05-28 14:27:22 +02:00
Maxime Devos 416f7843c4
gnu: tryton: Allow disabling the test suite.
* gnu/packages/tryton.scm
  (tryton-phases): Respect 'tests?' in the 'check' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 11:36:03 +02:00
Maxime Devos 0ab7796f4d
gnu: tryton: Use local 'inputs' instead of global '%build-inputs'.
The former is preferred above the latter.

* gnu/packages/tryton.scm (tryton-phases): Look up "trytond" in the
  'inputs' argument instead of in '%build-inputs'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 11:36:03 +02:00
Maxime Devos 45a96b3f03
gnu: tryton: Factor out custom ‘check’ phase.
* gnu/packages/tryton.scm
  (tryton-phases): New procedure.
  (tryton-arguments): New procedure.
  (python-trytond-account)[arguments]: Use 'tryton-phases'.
  (python-trytond-account-invoice)[arguments]: Likewise.
  (python-trytond-account-invoice-stock)[arguments]: Likewise.
  (python-trytond-account-product)[arguments]: Likewise.
  (python-trytond-analytic-account)[arguments]: Likewise.
  (python-trytond-company)[arguments]: Likewise.
  (python-trytond-country)[arguments]: Likewise.
  (python-trytond-currency)[arguments]: Likewise.
  (python-trytond-party)[arguments]: Likewise.
  (python-trytond-product)[arguments]: Likewise.
  (python-trytond-purchase)[arguments]: Likewise.
  (python-trytond-purchase-request)[arguments]: Likewise.
  (python-trytond-stock)[arguments]: Likewise.
  (python-trytond-stock-lot)[arguments]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 11:36:03 +02:00
Dion Mendel a800224260
gnu: libraft: Update to 0.10.1
* gnu/packages/cluster.scm (libraft): Update to 0.10.1

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28 11:36:03 +02:00
Ludovic Courtès c82b374979
gnu: intel-mpi-benchmarks: Remove top-level reference to 'openmpi'.
This circular dependency could lead to "unbound variable" errors when
running 'guix show openmpi' or similar.

* gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Inline code
formerly in 'intel-mpi-benchmarks' procedure.
(intel-mpi-benchmarks): Remove.
2021-05-28 11:36:02 +02:00
Mathieu Othacehe 90e1f9cbe1
gnu: cuirass: Update to 1.0.0-21.65ae16b.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-21.65ae16b.
2021-05-28 11:28:25 +02:00
Guillaume Le Vaillant 5e0b11fbe8
gnu: hackrf: Update to 2021.03.1.
* gnu/packages/radio.scm (hackrf): Update to 2021.03.1.
2021-05-28 11:15:21 +02:00
Roel Janssen 4ad3f818c9
gnu: Add python-cachetools.
* gnu/packages/python-xyz.scm (python-cachetools): New variable.
2021-05-28 10:47:16 +02:00
Guillaume Le Vaillant bd32bcca56
gnu: gnuradio: Add python-matplotlib dependency explicitly.
* gnu/packages/radio.scm (gnuradio)[inputs]: Add python-matplotlib.
2021-05-28 10:15:20 +02:00
Roel Janssen bb5a3e91e9
gnu: Add python-argopt.
* gnu/packages/python-xyz.scm (python-argopt): New variable.
2021-05-28 10:09:10 +02:00
Roel Janssen 87c9f63fce
gnu: Add python-pyega3.
* gnu/packages/bioinformatics.scm (python-pyega3): New variable.
2021-05-27 23:01:35 +02:00
Roel Janssen a30e616ccc
gnu: Add python-htsget.
* gnu/packages/bioinformatics.scm (python-htsget): New variable.
2021-05-27 22:50:46 +02:00
Roel Janssen 167fc141d4
gnu: Add python-helper.
* gnu/packages/python-xyz.scm (python-helper): New variable.
2021-05-27 20:59:16 +02:00
Roel Janssen 0b31e45b49
gnu: Add python-logutils.
* gnu/packages/python-xyz.scm (python-logutils): New variable.
2021-05-27 20:58:45 +02:00
Solene Rapenne 11ac8ac6fa
gnu: entr: Update to 4.9.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27 14:41:04 -04:00
Christopher Baines 8d4d32d1d1
gnu: guix-build-coordinator: Update to 0-29.8c98f47.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-29.8c98f47.
2021-05-27 19:00:47 +01:00
Jack Hill d1b3b5b73d
gnu: botan: Respect #:tests?.
* gnu/packages/crypto.scm (botan)[arguments]: Respect #:tests? in the custom
'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27 13:55:24 -04:00
Jack Hill 5f1c4692a5
gnu: botan: Update to 2.18.1.
* gnu/packages/crypto.scm (botan): Update to 2.18.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27 13:55:21 -04:00
Solene Rapenne 847af45d0e
gnu: phodav: Add gsettings-desktop-schemas input.
* gnu/packages/gnome.scm (phodav)[native-inputs]: Add
gsettings-desktop-schemas.

Fixes: https://issues.guix.gnu.org/48414
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-05-27 18:20:36 +02:00
Tobias Geerinckx-Rice 32acea79fa
gnu: lksctp-tools: Update to 1.0.19.
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19.
[source]: Remove patch.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-27 18:20:36 +02:00
Tobias Geerinckx-Rice 0fd84b7f68
gnu: lksctp-tools: Edit synopsis & description.
* gnu/packages/networking.scm (synopsis, description): Improve.
2021-05-27 18:20:36 +02:00
Tobias Geerinckx-Rice 49c2e3f69b
gnu: libndp: Update to 1.8.
* gnu/packages/networking.scm (libndp): Update to 1.8.
2021-05-27 18:20:36 +02:00
Tobias Geerinckx-Rice f0b9250382
gnu: ccl: Update to 1.12.1.
* gnu/packages/lisp.scm (ccl): Update to 1.12.1.
[inputs]: Keep using the 1.12 bootstrap for ARM.
2021-05-27 18:20:36 +02:00
Tobias Geerinckx-Rice 9401cb54fc
gnu: shotwell: Update to 0.30.12.
* gnu/packages/gnome.scm (shotwell): Update to 0.30.12.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice 963c235d50
gnu: libopenmpt: Update to 0.5.9.
* gnu/packages/audio.scm (libopenmpt): Update to 0.5.9.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice 80594d6749
gnu: iperf: Omit static library.
* gnu/packages/networking.scm (iperf)[arguments]: Add "--disable-static"
configure flag.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice f2c66d70fc
gnu: iperf: Update to 3.10.
* gnu/packages/networking.scm (iperf): Update to 3.10.
[source]: Build from git.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice a16ce0b11d
gnu: lightspark: Update to 0.8.4.1.
* gnu/packages/animation.scm (lightspark): Update to 0.8.4.1.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice e2d3f8d48a
gnu: nftables: Update to 0.9.9.
* gnu/packages/linux.scm (nftables): Update to 0.9.9.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice cedcab1da3
gnu: libnftnl: Update to 1.2.0.
* gnu/packages/linux.scm (libnftnl): Update to 1.2.0.
2021-05-27 18:20:35 +02:00
Tobias Geerinckx-Rice e6eacc34aa
gnu: xfsprogs: Update to 5.12.0.
* gnu/packages/linux.scm (xfsprogs): Update to 5.12.0.
2021-05-27 18:20:34 +02:00
Tobias Geerinckx-Rice c59606aa50
gnu: fio: Update to 3.27.
* gnu/packages/benchmark.scm (fio): Update to 3.27.
2021-05-27 18:20:34 +02:00
Tobias Geerinckx-Rice 3627ac367e
gnu: mpd: Update to 0.22.8.
* gnu/packages/mpd.scm (mpd): Update to 0.22.8.
2021-05-27 18:20:34 +02:00
Tobias Geerinckx-Rice 1ce87b8159
gnu: sassc: Update to 3.6.2.
* gnu/packages/web.scm (sassc): Update to 3.6.2.
2021-05-27 18:20:34 +02:00
Efraim Flashner 014421ee27
gnu: Add julia-scratch.
* gnu/packages/julia-xyz.scm (julia-scratch): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner f11621f122
gnu: Add julia-plotutils.
* gnu/packages/julia-xyz.scm (julia-plotutils): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner a033f81099
gnu: Add julia-colorschemes.
* gnu/packages/julia-xyz.scm (julia-colorschemes): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner f74305a011
gnu: Add julia-dictionaries.
* gnu/packages/julia-xyz.scm (julia-dictionaries): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner d54d21d0b2
gnu: Add julia-indexing.
* gnu/packages/julia-xyz.scm (julia-indexing): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner 40a7da2b14
gnu: Add julia-tableiointerface.
* gnu/packages/julia-xyz.scm (julia-tableiointerface): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner ced47448b0
gnu: Add julia-fuzzycompletions.
* gnu/packages/julia-xyz.scm (julia-fuzzycompletions): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner 114db2b9c4
gnu: Add julia-invertedindices.
* gnu/packages/julia-xyz.scm (julia-invertedindices): New variable.
2021-05-27 16:53:01 +03:00
Efraim Flashner 34ab622dc3
gnu: Add julia-versionparsing.
* gnu/packages/julia-xyz.scm (julia-versionparsing): New variable.
2021-05-27 16:53:00 +03:00
Efraim Flashner 35311e3b25
gnu: Add python-simpervisor.
* gnu/packages/python-xyz.scm (python-simpervisor): New variable.
2021-05-27 16:53:00 +03:00
Nicolas Goaziou c7e5007de4
gnu: emacs-modus-themes: Update to 1.4.0.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 1.4.0.
2021-05-27 15:05:29 +02:00
Roel Janssen c8286c8d4a
gnu: Add r-vcfr.
* gnu/packages/cran.scm (r-vcfr): New variable.
2021-05-27 14:26:41 +02:00
Roel Janssen 32cce42154
gnu: Add r-pinfsc50.
* gnu/packages/cran.scm (r-pinfsc50): New variable.
2021-05-27 14:21:12 +02:00
Roel Janssen 9bffc2ba45
gnu: Add r-memuse.
* gnu/packages/cran.scm (r-memuse): New variable.
2021-05-27 14:15:59 +02:00
Roel Janssen e7698cb20a
gnu: Add r-pacman.
* gnu/packages/cran.scm (r-pacman): New variable.
2021-05-27 14:11:39 +02:00
Roel Janssen 89fd577ec2
gnu: Add r-rffc.
* gnu/packages/cran.scm (r-rffc): New variable.
2021-05-27 13:55:33 +02:00
Roel Janssen cf9ddbd4bc
gnu: Add r-tradeseq.
* gnu/packages/bioconductor.scm (r-tradeseq): New variable.
2021-05-27 13:40:10 +02:00
Roel Janssen 5abf8a56ee
gnu: Add r-slingshot.
* gnu/packages/bioconductor.scm (r-slingshot): New variable.
2021-05-27 13:31:29 +02:00
Roel Janssen 12392cff50
gnu: Add r-princurve.
* gnu/packages/cran.scm (r-princurve): New variable.
2021-05-27 13:30:48 +02:00
Roel Janssen c555f54af5
gnu: Add perl-bsd-resource.
* gnu/packages/perl.scm (perl-bsd-resource): New variable.
2021-05-27 11:24:44 +02:00
Sharlatan Hellseher 23ab7067f3
gnu: Add cl-flare.
* gnu/packages/lisp-xyz.scm: (sbcl-flare, ecl-flare, cl-flare): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-27 09:05:24 +02:00
Sharlatan Hellseher 1ab3aab59a
gnu: Add cl-for.
* gnu/packages/lisp-xyz.scm: (sbcl-for, ecl-for, cl-for): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-27 09:05:20 +02:00
Leo Famulari e7d5ea9275
gnu: linux-libre 4.4: Update to 4.4.270.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.270.
(linux-libre-4.4-pristine-source): Update hash.
2021-05-26 19:31:40 -04:00
Leo Famulari aa024b7ccc
gnu: linux-libre 4.9: Update to 4.9.270.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.270.
(linux-libre-4.9-pristine-source): Update hash.
2021-05-26 19:31:40 -04:00
Leo Famulari 2239d98578
gnu: linux-libre 4.14: Update to 4.14.234.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.234.
(linux-libre-4.14-pristine-source): Update hash.
2021-05-26 19:31:40 -04:00
Leo Famulari 72538adf65
gnu: linux-libre 4.19: Update to 4.19.192.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.192.
(linux-libre-4.19-pristine-source): Update hash.
2021-05-26 19:31:39 -04:00
Leo Famulari f9677bf3ea
gnu: linux-libre 5.4: Update to 5.4.122.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.122.
(linux-libre-5.4-pristine-source): Update hash.
2021-05-26 19:31:39 -04:00
Leo Famulari 92d459dff8
gnu: linux-libre 5.10: Update to 5.10.40.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.40.
(linux-libre-5.10-pristine-source): Update hash.
2021-05-26 19:31:39 -04:00
Leo Famulari 829610986d
gnu: linux-libre: Update to 5.12.7.
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.7.
(linux-libre-5.12-pristine-source): Update hash.
2021-05-26 19:31:39 -04:00
Christopher Baines 832f7c3dd2
gnu: guix-build-coordinator: Update to 0-28.675c52d.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-28.675c52d.
2021-05-26 23:24:27 +01:00
Roel Janssen 2fc74f3176
gnu: Add r-clusterexperiment.
* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.
2021-05-26 23:54:14 +02:00
Roel Janssen 700b10f181
gnu: Add r-mbkmeans.
* gnu/packages/bioconductor.scm (r-mbkmeans): New variable.
2021-05-26 23:49:28 +02:00
Roel Janssen ad827f5bc1
gnu: Add r-benchmarkme.
* gnu/packages/cran.scm (r-benchmarkme): New variable.
2021-05-26 23:47:04 +02:00
Roel Janssen 2f91ab7628
gnu: Add r-benchmarkmedata.
* gnu/packages/cran.scm (r-benchmarkmedata): New variable.
2021-05-26 23:46:32 +02:00
Roel Janssen 1edec0e899
gnu: Add r-zinbwave.
* gnu/packages/bioconductor.scm (r-zinbwave): New variable.
2021-05-26 23:09:06 +02:00
Roel Janssen 9f27579fb9
gnu: Add r-phylobase.
* gnu/packages/cran.scm (r-phylobase): New variable.
2021-05-26 23:04:12 +02:00
Roel Janssen 22950d6615
gnu: Add r-rncl.
* gnu/packages/cran.scm (r-rncl): New variable.
2021-05-26 22:58:18 +02:00
Roel Janssen 416eaacbb1
gnu: Add r-locfdr.
* gnu/packages/cran.scm (r-locfdr): New variable.
2021-05-26 22:49:45 +02:00
Roel Janssen 84d551d45e
gnu: Add r-howmany.
* gnu/packages/cran.scm (r-howmany): New variable.
2021-05-26 22:46:06 +02:00