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599 Commits (9e6794a7f46d83cdd3a9f2ba1634ea2bf29ee9ec)

Author SHA1 Message Date
Ricardo Wurmus f626b71923
gnu: mdbtools: Remove custom bootstrap phase.
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
2018-11-11 10:05:56 +01:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Leo Famulari 41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
2018-11-08 13:42:56 -05:00
Marius Bakke e2568df74e
gnu: rocksdb: Update to 5.15.10.
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
2018-11-07 16:06:56 +01:00
Marius Bakke 8dd3665883
gnu: rocksdb: Don't use unstable tarball.
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
2018-11-07 16:06:56 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite.
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
2018-10-28 09:51:25 +02:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE.
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-10-24 04:56:23 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Tobias Geerinckx-Rice f825faa502
gnu: python-pickleshare: Update to 0.7.5.
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
2018-10-10 23:49:13 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Julien Lepiller c336567dad
gnu: postgresql: Fix finding extensions.
* gnu/packages/patches/postgresql-disable-resolve_symlinks.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (postgresql)[source]: Use it.
2018-10-04 22:26:02 +02:00
Ludovic Courtès 944a3a8b8e
gnu: recutils: Adjust Gnulib to libc 2.28.
Fixes <https://bugs.gnu.org/32776>.

* gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
2018-10-03 15:23:56 +02:00
Tobias Geerinckx-Rice a4764ff00a
gnu: python-fakeredis: Edit description.
* gnu/packages/databases.scm (python-fakeredis)[description]:
Fix (upstream) typo. Get carried away.
2018-09-28 00:01:43 +02:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Tobias Geerinckx-Rice eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21 10:25:31 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Tobias Geerinckx-Rice 702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
2018-09-11 21:03:07 +02:00
Marius Bakke 4333d48a82
gnu: mariadb: Move unbundle substitutions to source snippet.
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions
from ...
[arguments]: The 'unbundle' phase here.  Rename to 'fix-pcre-detection.
2018-09-09 17:59:37 +02:00
Marius Bakke 1d957c79b6
gnu: mariadb: Update to 10.1.36.
* gnu/packages/databases.scm (mariadb): Update to 10.1.36.
[arguments]: Disable one new test.
2018-09-09 17:59:36 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke 173d291466
Merge branch 'master' into staging 2018-08-25 16:38:51 +02:00
Ludovic Courtès 444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm.
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
2018-08-24 00:36:04 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
Marius Bakke 233df51ebc
Merge branch 'master' into staging 2018-08-22 18:14:04 +02:00
Marius Bakke fb76ef8477
gnu: Remove GCC ICE workarounds.
* gnu/packages/patches/doxygen-gcc-ice.patch,
gnu/packages/patches/mariadb-gcc-ice.patch,
gnu/packages/patches/perf-gcc-ice.patch: Delete files
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Likewise.
* gnu/packages/linux.scm (perf)[source](patches): Likewise.
* gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22 18:01:09 +02:00
Marius Bakke 43cec3fb1e
gnu: mariadb: Remove huge mysql_embedded executable.
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22 17:52:40 +02:00
Marius Bakke 22f5c07624
gnu: mariadb: Propagate OpenSSL.
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ...
[propagated-inputs]: ... here.
(r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22 17:50:07 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush.
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql.
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
Marius Bakke fdb222033c
gnu: gdbm: Update to 1.18.
* gnu/packages/databases.scm (gdbm): Update to 1.18.
2018-08-21 17:25:23 +02:00
Marius Bakke 2be1b754ba
gnu: python-sqlalchemy: Update to 1.2.11.
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
2018-08-21 17:24:30 +02:00
Marius Bakke 9871a896aa
gnu: python-sqlalchemy: Use 'invoke'.
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE
instead of SYSTEM*.
2018-08-21 17:24:30 +02:00
Tobias Geerinckx-Rice 8327ffcc7f
gnu: unixodbc: Update to 2.3.7.
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
2018-08-21 07:04:05 +02:00
Tobias Geerinckx-Rice 8ecf3f7ea5
gnu: mysql: Update to 5.7.23.
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 7cbf06d8c2
gnu: mysql: Fix build.
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 725449bd7a
gnu: python-pyodbc: Update to 4.0.24.
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 28635e5266
gnu: python-mysqlclient: Update to 1.3.13.
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20 20:17:19 +02:00
Roel Janssen e63da346cf
gnu: Update virtuoso-ose to 7.2.5.
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
2018-08-20 16:13:45 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke 0a1f520d40
gnu: r-rmysql: Add missing dependency on OpenSSL.
* gnu/packages/databases.scm (r-rmysql)[inputs]: Add OPENSSL.
2018-08-16 17:39:10 +02:00
Tobias Geerinckx-Rice 7fe3a57ac5
gnu: mysql: Use HTTPS.
* gnu/packages/databases.scm (mysql)[source, home-page]: Use HTTPS.
2018-08-16 00:58:27 +02:00
Pierre Langlois 7bcc34050b
gnu: clementine: Fix creating initial database.
It seems a recent version of sqlite broke Clementine's first startup. It turns
out we can patch clementine to fix the problem instead of providing a different
sqlite package:
<https://github.com/clementine-player/Clementine/pull/5669>

* gnu/packages/databases.scm (sqlite-with-fts3): Remove.
* gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with
sqlite.
[source]: Add clementine-fix-sqlite.patch.
* gnu/packages/patches/clementine-fix-sqlite.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-15 14:29:56 -04:00
Tobias Geerinckx-Rice 34ba1b8fc5
gnu: perl-db-file: Update to 1.842.
* gnu/packages/databases.scm (perl-db-file): Update to 1.842.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice 61d996b921
gnu: memcached: Fix typos in description.
* gnu/packages/databases.scm (memcached)[synopsis, description]:
Hyphenate.
2018-08-15 00:30:04 +02:00
Tobias Geerinckx-Rice b432c05203
gnu: memcached: Update to 1.5.10.
* gnu/packages/databases.scm (memcached): Update to 1.5.10.
2018-08-14 15:54:31 +02:00
Ricardo Wurmus b86c019efb
Merge branch 'staging' into core-updates 2018-08-13 20:39:32 +02:00
Tobias Geerinckx-Rice 9aba9b1278
Migrate search.cpan.org home pages to metacpan.org.
The venerable search.cpan.org has retired[0].

[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html

* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
2018-08-11 17:22:31 +02:00
Marius Bakke 369d15674c
gnu: mariadb: Update to 10.1.35 [security fixes].
This release fixes CVE-2018-3058, CVE-2018-3063, CVE-2018-3064 and CVE-2018-3066.
See <https://mariadb.com/kb/en/library/mariadb-10135-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.35.
2018-08-10 15:23:50 +02:00
Marius Bakke 516fe8deb5
gnu: postgresql: Update to 10.5 [fixes CVE-2018-10915, CVE-2018-10925].
* gnu/packages/databases.scm (postgresql): Update to 10.5.
2018-08-10 15:23:50 +02:00
Efraim Flashner 62694caa44
gnu: mariadb: Remove test which fails on armhf-linux.
* gnu/packages/databases.scm (mariadb)[arguments]: Disable test
'mroonga/storage.index_read_multiple_double'.
2018-08-07 19:55:33 +03:00
Marius Bakke 71179b35b8
gnu: mariadb: Further increase test timeouts.
* gnu/packages/databases.scm (mariadb)[arguments]: Allow 40 minutes for single
tests, and 600 in total.
2018-08-07 13:41:08 +02:00
Marius Bakke 3418e43bf5
gnu: mariadb: Adjust to test failures on Hydra.
* gnu/packages/patches/mariadb-client-test-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
[arguments]: Increase retry count and test timeout.  Disable test
main.myisampack.
2018-08-07 00:51:48 +02:00
Marius Bakke 4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Ben Woodcroft 19601e895b
gnu: python2-psycopg2: Update to 2.7.5.
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-29 22:53:10 +10:00
Marius Bakke 0333582477
gnu: mariadb: Move GCC ICE patch to the usual location.
* gnu/packages/databases.scm (mariadb)[source](patches): New field.
[arguments]: Don't disable semisync plugin.
[inputs]: Remove 'mariadb-gcc-ice.patch'.
2018-07-28 18:37:37 +02:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Ludovic Courtès 5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux.
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-28 15:08:07 +02:00
Marius Bakke 963157f1cc
gnu: mariadb: Delete test files and static libraries.
* gnu/packages/databases.scm (mariadb)[arguments]: Adapt 'post-install' phase
  to purge static archives and test executables.
2018-07-26 14:38:03 +02:00
Marius Bakke 2001d2dac4
gnu: mariadb: Remove some bundled libraries.
* gnu/packages/databases.scm (mariadb)[source](snippet, modules): New fields.
[arguments]: Add explicit #:configure-flags for system libraries.  Add
'unbundle' phase.  Remove 'pre-configure' phase.
[inputs]: Add SNAPPY and XZ.
2018-07-26 14:38:03 +02:00
Marius Bakke 03aed90b86
gnu: mariadb: Update to 10.1.34.
* gnu/packages/databases.scm (mariadb): Update to 10.1.34.
2018-07-26 14:38:02 +02:00
Marius Bakke 3869f39e6d
gnu: mariadb: Run the full test suite.
* gnu/packages/databases.scm (mariadb)[arguments]: Override 'check' phase.
Add phase 'adjust-tests'.  Disable one more plugin.
[properties]: New field.
2018-07-26 14:38:02 +02:00
Marius Bakke 5b4d2e40f1
gnu: mariadb: Disable plugin that fails on armhf.
* gnu/packages/databases.scm (mariadb)[arguments]: Add 'disable-plugins' phase.
2018-07-26 14:38:02 +02:00
Marius Bakke 4c27ea06d4
gnu: mariadb: Install pkg-config file to a standard location.
* gnu/packages/databases.scm (mariadb)[#:configure-flags]: Set
INSTALL_SHAREDIR to "share".
2018-07-26 14:37:29 +02:00
Marius Bakke 706ae8e15c
Merge branch 'master' into core-updates 2018-07-24 19:56:35 +02:00
Efraim Flashner 97dd1b154b
gnu: postgresql@9.6: Update to 9.6.9.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.9.
2018-07-15 22:59:24 +03:00
Marius Bakke 9761aca95c
gnu: unixodbc: Update to 2.3.6.
* gnu/packages/databases.scm (unixodbc): Update to 2.3.6.
2018-07-13 00:51:06 +02:00
Marius Bakke 49b6dc2b4e
Merge branch 'staging' 2018-07-13 00:25:45 +02:00
Marius Bakke b7a2d2d9a9
gnu: tdb: Update to 1.3.16.
* gnu/packages/databases.scm (tdb): Update to 1.3.16.
2018-07-12 17:21:16 +02:00
Efraim Flashner cb9a84bd89
gnu: gdbm: Update to 1.16.
* gnu/packages/databases.scm (gdbm): Update to 1.16.
2018-07-03 10:43:06 +03:00
Ricardo Wurmus f1728d4346
Merge branch 'master' into core-updates 2018-06-29 22:51:23 +02:00
Marius Bakke 4dfea1010a
Merge branch 'master' into staging 2018-06-21 15:52:26 +02:00
Tobias Geerinckx-Rice cd0750fcf2
gnu: memcached: Update to 1.5.8.
* gnu/packages/databases.scm (memcached): Update to 1.5.8.
2018-06-20 04:56:33 +02:00
Marius Bakke 0106d6b40d
Merge branch 'master' into staging 2018-06-19 17:02:16 +02:00
Marius Bakke 793a66e5fe
gnu: redis: Update to 4.0.10 [fixes CVE-2018-11218, CVE-2018-11219].
* gnu/packages/databases.scm (redis): Update to 4.0.10.
2018-06-19 15:54:49 +02:00
Marius Bakke 6969c4de44
Merge branch 'master' into staging 2018-06-18 15:29:38 +02:00
Tobias Geerinckx-Rice f71619648c
gnu: perl-dbi: Update to 1.641.
* gnu/packages/databases.scm (perl-dbi): Update to 1.641.
2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice d30e9e6109
gnu: sqlite: Update to 3.24.0.
* gnu/packages/databases.scm (sqlite): Update to 3.24.0.
2018-06-12 15:06:23 +02:00
Marius Bakke a032b4454b
Merge branch 'master' into staging 2018-06-11 23:52:15 +02:00
宋文武 cd8ece22bf
gnu: redis: Update to 4.0.9.
* gnu/packages/database.scm (redis): Update to 4.0.9.
2018-06-08 20:27:30 +08:00
Ricardo Wurmus 8709624756
Merge branch 'origin/core-updates-next' into core-updates 2018-06-06 23:01:48 +02:00
Ricardo Wurmus 116ca65b58
Merge branch 'master' into core-updates 2018-06-06 22:43:37 +02:00
Tobias Geerinckx-Rice 3b295d3f4b
gnu: python-lmdb: Update to 0.94.
* gnu/packages/databases.scm (python-lmdb): Update to 0.94.
2018-06-06 06:12:22 +02:00
Ricardo Wurmus 59f87b44da
Merge branch 'master' into core-updates 2018-05-31 13:23:49 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
Efraim Flashner d2dde99e99
gnu: mariadb: Update to 10.1.33.
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31 08:45:58 +03:00
Efraim Flashner 03d9031962
gnu: mariadb: Update to 10.1.33.
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-30 22:46:31 +03:00
Tobias Geerinckx-Rice 1fbad3ad22
gnu: postgresql: Use INVOKE.
* gnu/packages/databases.scm (postgresql)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-24 23:59:14 +02:00
Tobias Geerinckx-Rice 7e0f04635b
gnu: postgresql: Update to 10.4 [fixes CVE-2018-1115].
* gnu/packages/databases.scm (postgresql): Update to 10.4.
2018-05-24 23:59:14 +02:00
Mark H Weaver f0ae90cbbb
Merge branch 'master' into core-updates 2018-04-30 16:48:15 -04:00
Tobias Geerinckx-Rice 1672e7e714
gnu: perl-dbix-class-schema-loader: Update to 0.07049.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader): Update to 0.07049.
2018-04-30 21:36:11 +02:00
Tobias Geerinckx-Rice 435897c0f2
gnu: perl-dbix-class: Update to 0.082841.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082841.
2018-04-30 21:36:10 +02:00
Marius Bakke 30d900d4ee
gnu: sqlite: Update to 3.23.1.
* gnu/packages/databases.scm (sqlite): Update to 3.23.1.
2018-04-30 20:48:55 +02:00
Mark H Weaver 3d5ad159b3
Merge branch 'master' into core-updates 2018-04-30 04:03:54 -04:00
Marius Bakke 8bf8dedc9a
gnu: rocksdb: Update to 5.12.4.
* gnu/packages/databases.scm (rocksdb): Update to 5.12.4.
2018-04-25 15:09:22 +02:00
Mark H Weaver f89aa1521a
Merge branch 'master' into core-updates 2018-04-10 00:42:22 -04:00
Tobias Geerinckx-Rice 4bac91e1d8
gnu: perl-db-file: Update to 1.841.
* gnu/packages/databases.scm (perl-db-file): Update to 1.841.
2018-04-05 06:39:02 +02:00
Tobias Geerinckx-Rice f560acf8d9
gnu: lmdb: Update to 0.9.22.
* gnu/packages/databases.scm (lmdb): Update to 0.9.22.
2018-04-05 06:39:01 +02:00
Roel Janssen ea09f99f7f
gnu: 4store: Remove preprocessor directive.
* gnu/packages/databases.scm (4store): Add patch to remove preprocessor
  directive.
* gnu/packages/patches/4store-unset-preprocessor-directive.patch: New file.
* gnu/local.mk: Register patch.
2018-04-04 14:54:02 +02:00
Roel Janssen 6d09a7b5ec
gnu: virtuoso-ose: Unbundle zlib and build with readline support.
* gnu/packages/databases.scm (virtuoso-ose):
  [inputs]: Add zlib, and readline;
  [arguments]: Add --without-internal-zlib, and --with-readline.
2018-04-03 13:07:21 +02:00
Marius Bakke bce2206021
gnu: sqlite: Update to 3.23.0.
* gnu/packages/databases.scm (sqlite): Update to 3.23.0.
2018-04-02 16:23:32 +02:00
Mark H Weaver 5114c83a24
gnu: bdb: Use invoke.
* gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Use invoke in the
custom configure phase.
2018-03-25 05:01:32 -04:00
Mark H Weaver 2c48ed4e97
gnu: postgresql: Use invoke.
* gnu/packages/databases.scm (postgresql)[arguments]: Use invoke in the
'build-contrib' and 'install-contrib' phases.
2018-03-23 04:43:35 -04:00
Mark H Weaver a0b06671c6
gnu: mysql: Return #t from all phases.
* gnu/packages/databases.scm (mysql)[arguments]: Return #t from
the 'patch-boost-version' phase.
2018-03-23 04:43:07 -04:00
Mark H Weaver 841ee2a878
gnu: mariadb: Return #t from all phases.
* gnu/packages/databases.scm (mariadb)[arguments]: Return #t from
the 'post-install' phase.
2018-03-23 04:42:55 -04:00
Mark H Weaver ac21be848a
Merge branch 'master' into core-updates 2018-03-20 14:22:06 -04:00
ng0 4a78fd4617
Correct name and Email for ng0.
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-20 17:17:58 +01:00
Mark H Weaver 647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Tobias Geerinckx-Rice 3def739da1
gnu: Use the CMake build system's #:build-type key.
* gnu/packages/code.scm (rtags)[arguments]: Move the CMAKE_BUILD_TYPE
from #:configure-flags to #:build-type.
* gnu/packages/databases.scm (apache-arrow)[arguments]: Likewise
* gnu/packages/engineering.scm (kicad)[arguments]: Likewise
* gnu/packages/flashing-tools.scm (heimdall)[arguments]: Likewise
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Likewise
* gnu/packages/linux.scm (rdma-core)[arguments]: Likewise
* gnu/packages/music.scm (portmidi)[arguments]: Likewise
* gnu/packages/photo.scm (rawtherapee)[arguments]: Likewise
* gnu/packages/rdesktop.scm (freerdp)[arguments]: Likewise
* gnu/packages/serialization.scm (flatbuffers)[arguments]: Likewise
* gnu/packages/web.scm (tidy-html)[arguments]: Likewise
2018-03-17 16:37:28 +01:00
Tobias Geerinckx-Rice 93e8731dcb
gnu: perl-sql-abstract: Update to 1.85.
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.85.
2018-03-17 16:37:19 +01:00
Mark H Weaver 9f388b1ee1
Merge branch 'master' into core-updates 2018-03-17 01:18:37 -04:00
Mark H Weaver 6cbee49d66
gnu: All snippets report errors using exceptions, else return #t.
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm,
gnu/packages/bioinformatics.scm, gnu/packages/cdrom.scm,
gnu/packages/chez.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/cross-base.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm,
gnu/packages/databases.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm,
gnu/packages/emulators.scm, gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm, gnu/packages/fpga.scm,
gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm,
gnu/packages/gcc.scm, gnu/packages/geo.scm, gnu/packages/ghostscript.scm,
gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm, gnu/packages/graphics.scm, gnu/packages/gtk.scm,
gnu/packages/guile.scm, gnu/packages/irc.scm, gnu/packages/java.scm,
gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm,
gnu/packages/lxde.scm, gnu/packages/machine-learning.scm,
gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/messaging.scm,
gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/music.scm,
gnu/packages/netpbm.scm, gnu/packages/networking.scm, gnu/packages/node.scm,
gnu/packages/nvi.scm, gnu/packages/ocaml.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/php.scm, gnu/packages/plotutils.scm,
gnu/packages/pretty-print.scm, gnu/packages/profiling.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/robotics.scm,
gnu/packages/sawfish.scm, gnu/packages/scanner.scm, gnu/packages/scheme.scm,
gnu/packages/scribus.scm, gnu/packages/sdl.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/slang.scm, gnu/packages/smalltalk.scm, gnu/packages/ssh.scm,
gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/tbb.scm,
gnu/packages/terminals.scm, gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm, gnu/packages/textutils.scm,
gnu/packages/tls.scm, gnu/packages/unrtf.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm:
In all snippets, report errors using exceptions, or else return #t.
2018-03-16 09:08:31 -04:00
Leo Famulari 5e5ac7102c
gnu: Add python-pyarrow.
* gnu/packages/databases.scm (python-pyarrow, python2-pyarrow): New variables.
2018-03-15 10:57:52 -04:00
Leo Famulari dae7661a0d
gnu: Add apache-arrow.
* gnu/packages/databases.scm (apache-arrow): New variable.
2018-03-15 10:57:52 -04:00
Marius Bakke 9a92b9e61a
gnu: gdbm: Update to 1.14.1.
* gnu/packages/databases.scm (gdbm): Update to 1.14.1.
2018-03-14 22:11:34 +01:00
Ricardo Wurmus 8c72ed923d
Merge branch 'master' into core-updates 2018-03-14 17:37:20 +01:00
Ludovic Courtès 189be331ac
build-system/gnu: Add 'bootstrap' phase.
This factorizes what has become a widespread idiom.

* guix/build/gnu-build-system.scm (%bootstrap-scripts): New variable.
(bootstrap): New procedure.
(%standard-phases): Add it after 'unpack'.
* guix/build/ant-build-system.scm (%standard-phases): Delete 'bootstrap.
* guix/build/asdf-build-system.scm (%standard-phases/source)
(%standard-phases): Likewise.
* guix/build/cargo-build-system.scm (%standard-phases): Likewise.
* guix/build/cmake-build-system.scm (%standard-phases): Likewise.
* guix/build/dub-build-system.scm (%standard-phases): Likewise.
* guix/build/emacs-build-system.scm (%standard-phases): Likewise.
* guix/build/font-build-system.scm (%standard-phases): Likewise.
* guix/build/go-build-system.scm (%standard-phases): Likewise.
* guix/build/haskell-build-system.scm (%standard-phases): Likewise.
* guix/build/minify-build-system.scm (%standard-phases): Likewise.
* guix/build/ocaml-build-system.scm (%standard-phases): Likewise.
* guix/build/perl-build-system.scm (%standard-phases): Likewise.
* guix/build/python-build-system.scm (%standard-phases): Likewise.
* guix/build/r-build-system.scm (%standard-phases): Likewise.
* guix/build/ruby-build-system.scm (%standard-phases): Likewise.
* guix/build/scons-build-system.scm (%standard-phases): Likewise.
* guix/build/texlive-build-system.scm (%standard-phases): Likewise.
* guix/build/waf-build-system.scm (%standard-phases): Likewise.
* gnu/packages/audio.scm (faad2)[arguments]: Replace 'bootstrap.
(soundtouch, cuetools, bluez-alsa): Remove 'arguments'.
(cava)[arguments]: Replace 'bootstrap.
* gnu/packages/backup.scm (rdup): Remove 'bootstrap.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Replace
'bootstrap.
* gnu/packages/bioinformatics.scm (htslib-for-sambamba): Remove
'arguments'.
* gnu/packages/ci.scm (hydra, cuirass): Remove 'bootstrap'.
* gnu/packages/crypto.scm (libb2): Remove #:phases.
* gnu/packages/databases.scm (guile-wiredtiger): Likewise.
* gnu/packages/debug.scm (stress-make): Remove 'bootstrap'.
* gnu/packages/documentation.scm (asciidoc): Likewise.
* gnu/packages/fontutils.scm (libuninameslist): Remove 'arguments'.
* gnu/packages/ftp.scm (weex): Remove 'arguments'.
* gnu/packages/game-development.scm (ois): Remove 'arguments'.
* gnu/packages/games.scm (pioneer): Remove 'bootstrap.
* gnu/packages/gnome.scm (vte-ng, byzanz): Replace 'bootstrap.
(arc-theme): Remove 'arguments'.
(faba-icon-theme): Remove 'bootstrap.
(arc-icon-theme): Remove 'arguments'.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/gtk.scm (guile-rsvg): Likewise.
* gnu/packages/guile.scm (mcron2): Remove 'bootstrap.
(guile-bash): Remove #:phases.
(guile-git): Remove 'bootstrap.
(guile-syntax-highlight): Remove 'arguments'.
(guile-sjson): Likewise.
* gnu/packages/java.scm (classpath-devel): Remove 'bootstrap.
* gnu/packages/kodi.scm (libdvdnav/kodi)
(libdvdread/kodi, libdvdcss/kodi): Likewise.
* gnu/packages/libreoffice.scm (hunspell): Remove 'arguments'.
* gnu/packages/libusb.scm (hidapi): Likewise.
* gnu/packages/linux.scm (bridge-utils): Rename 'bootstrap' to
'patch-stuff'; move it before 'bootstrap', without autoreconf
invocation.
(eudev): Rename 'bootstrap' to 'patch-file-names', without 'autogen.sh'
invocation; move it before 'bootstrap.
(gpm): Replace 'bootstrap'.
(f2fs-tools): Remove 'arguments'.
(rng-tools): Remove #:phases.
* gnu/packages/messaging.scm (hexchat): Rename 'bootstrap' to
'copy-intltool-makefile'; remove "autoreconf" invocation and move before
'bootstrap'.
(libmesode): Remove 'arguments'.
(libstrophe): Likewise.
* gnu/packages/microcom.scm (microcom): Likewise.
* gnu/packages/networking.scm (libnet): Remove 'bootstrap.
* gnu/packages/onc-rpc.scm (libnsl): Remove 'arguments'.
* gnu/packages/package-management.scm (guix): Replace 'bootstrap.
* gnu/packages/sawfish.scm (librep): Remove 'arguments'.
* gnu/packages/version-control.scm (findnewest): Likewise.
* gnu/packages/video.scm (liba52, handbrake, motion): Replace
'bootstrap.
* gnu/packages/web.scm (fcgiwrap): Remove #:phases.
(tidy): Replace 'bootstrap.
(gumbo-parser): Remove #:phases.
* gnu/packages/wget.scm (wget2): Replace 'bootstrap.
* gnu/packages/wm.scm (i3lock-color): Remove #:phases.
* gnu/packages/xdisorg.scm (xclip): Likewise.
* gnu/packages/xml.scm (libxls): Replace 'bootstrap'.
* gnu/packages/xorg.scm (xf86-video-freedreno)
(xf86-video-intel): Remove #:phases.
* gnu/packages/zile.scm (zile-on-guile): Replace 'bootstrap.
2018-03-11 22:04:40 +01:00
Marius Bakke 7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
Efraim Flashner c553b08b49
gnu: python-apsw: Use invoke.
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
Efraim Flashner f5c847ebd0
gnu: python-apsw: Declare a source file-name.
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Leo Famulari 703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
2018-03-01 20:01:48 -05:00
Leo Famulari bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql): Update to 10.3.
2018-03-01 20:01:48 -05:00
Leo Famulari e9802319f7
gnu: memcached: Update to 1.5.6.
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
2018-03-01 20:00:12 -05:00
Ricardo Wurmus 29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01 21:28:53 +01:00
Marius Bakke ff856cfdcc
gnu: python-pickleshare: Run the tests.
* gnu/packages/databases.scm (python-pickleshare)[arguments]: Replace CHECK-PHASE.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-26 04:50:30 +01:00
Marius Bakke ed519b3c1f
gnu: python-pickleshare: Update to 0.7.4.
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.4.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove.
[properties]: Delay python2 variant.
(python2-pickleshare)[propagated-inputs]: Add PYTHON2-PATHLIB2.
2018-02-26 04:49:52 +01:00
Ludovic Courtès cff07bde98
gnu: sqlite: Fix source URL.
* gnu/packages/databases.scm (sqlite)[source]: Change "/2017" to
"/2018".
2018-02-24 23:11:49 +01:00
Marius Bakke eaa7b9664e
gnu: gdbm: Update to 1.14.
* gnu/packages/databases.scm (gdbm): Update to 1.14.
2018-02-20 19:54:24 +01:00
Marius Bakke e83f62f947
gnu: sqlite: Update to 3.22.0.
* gnu/packages/databases.scm (sqlite): Update to 3.22.0.
2018-02-20 16:01:46 +01:00
Mark H Weaver 150062f190
Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
Tobias Geerinckx-Rice 8c078ddec4
gnu: perl-dbd-pg: Update to 3.7.4.
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.4.
2018-02-16 11:15:02 +01:00
Mark H Weaver efe2a2833c
Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
Leo Famulari 2c433a1612
gnu: postgresql: Update to 10.2 [CVE-2018-{1052,1053}].
* gnu/packages/databases.scm (postgresql): Update to 10.2.
2018-02-08 17:47:52 -05:00
Mark H Weaver e7ca634912
Merge branch 'master' into core-updates 2018-02-03 22:46:07 -05:00
Christopher Baines 9b32bf6e6c
gnu: Fix and improve the mongo-tools package.
The hash of the source for this package is wrong. Most probably because the
source was changed from a tarball to a git repository without updating the
hash. Fixing this seems to break the check phase, so I rewrote that as well,
making changes to the build and install phases as needed.

* gnu/packages/databases.scm (mongo-tools)[source]: Update the hash value.
  [arguments]: Remove the different unpack path, as this isn't necessary when
  using the git repository as a source. Move the list of tools to make it
  accessible from multiple phases. Rewrite the build phase, getting it to
  install the tools in to the location the tests seem to expect to find
  them. Replace the check phase to run the tests for each tool
  individually. Add an install phase to install the tools, now that go install
  is not being run in the build phase.
  [native-inputs]: Add go-github.com-smartystreets-goconvey as a native-input
  as this is required for running the tests.
2018-02-01 20:21:25 +00:00
Marius Bakke bee7bb315c
Merge branch 'master' into core-updates 2018-02-01 13:18:47 +01:00
Christopher Baines 33c88fcb25
gnu: Add mongo-tools.
* gnu/packages/databases.scm (mongo-tools): New variable.
2018-01-30 07:41:31 +00:00
Christopher Baines 5807172300
gnu: Add go-gopkg.in-mgo.v2.
* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): New variable.
2018-01-30 07:41:30 +00:00
Mark H Weaver b9ed5ef3fb
gnu: Add sqlite-with-fts5.
* gnu/packages/databases.scm (sqlite-with-fts5): New variable.
2018-01-28 00:23:32 -05:00
Mark H Weaver b89d8a4271
Merge branch 'master' into core-updates 2018-01-26 00:15:26 -05:00
Tobias Geerinckx-Rice bbf9092b9d
gnu: 4store: Update URI.
* gnu/packages/databases.scm (4store)[source, home-page]: Update URI.
2018-01-26 00:09:19 +01:00
Mark H Weaver e074a655dd
Merge branch 'master' into core-updates 2018-01-19 23:59:20 -05:00
Efraim Flashner 8d7b476ba9
gnu: mongodb: Fix indentation.
* gnu/packages/databases.scm (mongodb): Replace tabs with spaces.
2018-01-18 15:12:04 +02:00
Efraim Flashner 7f6a607e2a
gnu: mysql: Update to 5.7.21.
* gnu/packages/databases.scm (mysql): Update to 5.7.21.
2018-01-18 15:12:02 +02:00
Christopher Baines 0076f5a98c
gnu: Remove redundant wrapping from packages using ruby-build-system.
Now that the build system does wrapping automatically, it can be removed from
the packages that do it manually.

* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove #:phases.
* gnu/packages/ruby.scm (ruby-redcloth)[arguments]: Remove #:phases.
  (ruby-httpclient)[arguments]: Remove 'wrap-bin-httpclient from the modified
  phases.
2018-01-14 22:16:26 +00:00
Christopher Baines 3cb3fa6747
guix: build: ruby-build-system: Install to the vendor directory
* guix/build/ruby-build-system.scm (install): Install gems to the vendor
  directory, rather than the GEM_HOME. The vendor directory does not include
  the version of ruby used to install the gem in the path, which makes it
  easier to add it to the GEM_PATH for all versions of ruby to use.
  (gem-home): Remove procedure.
* gnu/packages/ruby.scm (ruby, ruby-2.1)[native-search-paths]: Switch to
  lib/ruby/vendor_ruby.
  (ruby-1.8)[native-search-paths]: Remove native-search-paths.
  (gem-directory): Remove procedure.
  (ruby-ansi, ruby-ae)[arguments]: Remove use of gem-directory.
  (ruby-metaclass, ruby-instantiator, ruby-introspection, ruby-mocha,
  ruby-nokogiri, ruby-minitest-tu-shim, ruby-redcloth)[arguments]: Remove use
  of gem-home.
  (ruby-git, ruby-httpclient)[arguments]: Remove use of GEM_HOME.
* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove use of
  GEM_HOME.
2018-01-14 22:16:08 +00:00
Leo Famulari 4adb40bffc
Merge branch 'master' into core-updates 2018-01-11 14:22:50 -08:00
amirouche 3926a099b4
gnu: guile-wiredtiger: Update to 0.6.3.
* gnu/package/databases.scm (guile-wiredtiger): Update to 0.6.3.
[arguments]: Enable tests; disable parallel tests; remove
'remove-bundled-dependencies' phase.
[synopsis, description]: Improve them.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-01-08 12:46:53 -05:00
Efraim Flashner 23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
Christopher Baines 90205b625e
gnu: Run some tests in the mongodb package check phase.
Previously the mongodb dbtests and unittests were only built, and not actually
run.

* gnu/packages/databases.scm (mongodb)[native-inputs]: Add python2-minimal,
  python2-pymongo and python2-pyyaml for running the resmoke.py program, and
  add tzdata as some tests fail without this.
  [arguments]: Run the tests through the resmoke.py script in the check phase,
  set TZDIR as a couple of tests seem to depend on this, add a comment about
  the resource requirements of the tests, as they require a large amount of
  disk space, and disable the async_stream_test, as it seems to hang.
2017-12-27 13:28:34 +00:00
Christopher Baines a469c69508
gnu: Build wiredtiger with builtin compressors.
WiredTiger is used by MongoDB, and it seems to require it to be built with
builtin support for snappy compression.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Replace --enable-zlib
  and --enable-snappy with --with-builtins=snappy,zlib.
2017-12-27 13:28:24 +00:00
Tobias Geerinckx-Rice 53ae35e443
gnu: python-sqlalchemy-utils: Update to 0.32.21.
* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.32.21.
2017-12-26 16:44:52 +01:00
Tobias Geerinckx-Rice bcdc5caed7
gnu: python-sadisplay: Update to 0.4.8.
* gnu/packages/databases.scm (python-sadisplay): Update to 0.4.8.
2017-12-26 16:43:57 +01:00
Tobias Geerinckx-Rice a7f27da7f2
gnu: check, databases: Use HTTPS for bitbucket.org.
* gnu/packages/check.scm (python-pytest-capturelog)[home-page]: Likewise.
* gnu/packages/databases.scm (python-alembic)[home-page]: Likewise.
2017-12-26 02:27:42 +01:00
Tobias Geerinckx-Rice 08455a3464
gnu: python-redis: Update to 2.10.6.
* gnu/packages/databases.scm (python-redis): Update to 2.10.6.
2017-12-26 02:03:41 +01:00
Tobias Geerinckx-Rice 030274ccac
gnu: python-alembic: Update to 0.9.6.
* gnu/packages/databases.scm (python-alembic): Update to 0.9.6.
2017-12-26 02:03:41 +01:00
Christopher Baines 3faa422d5f
gnu: Build wiredtiger with snappy support.
This is probably necessary to get the MongoDB package in Guix to successfully
use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by
default.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to
  #:configure-flags.
  [inputs]: Add snappy.
2017-12-22 19:23:53 +00:00
Leo Famulari 0054564b85
gnu: mariadb: Update to 10.1.29.
* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
2017-12-22 10:53:50 -05:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Efraim Flashner 439980b707
gnu: perl-sql-abstract: Update source uri.
* gnu/packages/databases.scm (perl-sql-abstract)[source]: Update source uri.
2017-12-10 11:35:28 +02:00
Marius Bakke 9e111db453
Merge branch 'master' into core-updates 2017-12-07 18:26:11 +01:00
Tobias Geerinckx-Rice b10ac21511
gnu: perl-dbd-pg: Update to 3.7.0.
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.0
2017-12-07 02:59:24 +01:00
Tobias Geerinckx-Rice 47b059197d
gnu: perl-sql-abstract: Update to 1.84.
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.84
2017-12-07 02:59:24 +01:00
Tobias Geerinckx-Rice b2b995622a
gnu: perl-dbix-class-schema-loader: Update to 0.07047.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader): Update to
0.07047
2017-12-07 02:59:17 +01:00
Tobias Geerinckx-Rice 84a0008ae7
gnu: perl-dbi: Update to 1.637.
* gnu/packages/databases.scm (perl-dbi): Update to 1.637
2017-12-07 02:57:28 +01:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Arun Isaac 6e385b76e6
gnu: mongodb: Use scons-build-system.
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30 18:21:23 +05:30
Efraim Flashner 51b0f09e05
gnu: mongodb: Remove some bundled sources.
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove
some of the bundled sources.
[input]: Remove unused boost input.
2017-11-26 14:16:08 +02:00
Efraim Flashner 319b52c382
gnu: mongodb: Use system wiredtiger when available.
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on
64-bit systems.
[arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26 14:16:08 +02:00
Efraim Flashner 29cfbfca43
gnu: mongodb: Build without wiredtiger on 32-bit systems.
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag
to build without wiredtiger support on 32-bit systems.
2017-11-26 14:16:04 +02:00
Leo Famulari f1c49e75f4
gnu: mongodb: Update to 3.4.10.
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-25 20:28:11 -05:00
Danny Milosavljevic 41916bea1b
gnu: Add python-pyodbc.
* gnu/packages/databases.scm (python-pyodbc, python2-pyodbc): New variables.
2017-11-20 20:47:59 +01:00
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Ricardo Wurmus a8714bf680
gnu: Move database packages from python.scm to databases.scm.
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite,
python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils,
python2-sqlalchemy-utils, python-alembic, python2-alembic,
python-pickleshare, python2-pickleshare, python-apsw, python2-apsw,
python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2,
python-sadisplay, python2-sadisplay, python-mysqlclient,
python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis,
python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq,
python-trollius-redis, python2-trollius-redis, python-sqlparse,
python2-sqlparse, python-sql, python2-sql): Move from here...
* gnu/packages/databases.scm: ...to here.
* gnu/packages/tryton.scm,
gnu/packages/python-web.scm,
gnu/packages/nutrition.scm,
gnu/packages/medical.scm: Adjust accordingly.
2017-11-17 22:36:27 +01:00
Kristofer Buffington 1697307185
gnu: Add guile-wiredtiger.
* gnu/packages/databases.scm (guile-wiredtiger): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-14 23:46:53 +01:00
Ricardo Wurmus 5ccde2079e
gnu: Move test packages from perl to perl-check.
* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
2017-11-13 23:03:01 +01:00
Efraim Flashner 179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.

* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
Rutger Helling 1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.

* gnu/packages/databases.scm (postgresql): Update to 10.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
Ricardo Wurmus 74248d22a0
gnu: Add r-rmysql.
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
Marius Bakke aa70cf8c36
gnu: redis: Update to 4.0.2.
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
Marius Bakke 4527a97fac
gnu: sqlite: Update to 3.21.0.
* gnu/packages/databases.scm (sqlite): Update to 3.21.0.
2017-11-01 23:35:12 +01:00
Efraim Flashner eda8a841ac
Merge remote-tracking branch 'origin/python-updates' into core-updates 2017-10-26 12:45:11 +03:00
Tobias Geerinckx-Rice b7883b111d
Merge branch 'master' into core-updates 2017-10-25 20:02:08 +02:00
Ricardo Wurmus 6a23c8b183
gnu: Add sqlite-with-fts3.
* gnu/packages/databases.scm (sqlite-with-fts3): New variable.

Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
2017-10-25 15:13:38 +02:00
Marius Bakke ca4fd41de8
Merge branch 'master' into core-updates 2017-10-24 22:00:23 +02:00
Tobias Geerinckx-Rice 57af0d13b2
gnu: python-lmdb: Update to 0.93.
* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
2017-10-23 14:49:32 +02:00
Tobias Geerinckx-Rice afd845368a
gnu: python-peewee: Update to 2.10.2.
* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
2017-10-23 14:49:31 +02:00
Marius Bakke 119a749db9
Merge branch 'master' into core-updates 2017-10-22 20:12:52 +02:00
Leo Famulari 48f8b07082
gnu: mysql: Update to 5.7.20.
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
2017-10-20 15:36:42 -04:00
Marius Bakke 928da609b5
gnu: Remove python-pytest@2.
* gnu/packages/python.scm (python-pytest): Update to 3.0.7.
[source]: Move substitution to ...
[arguments]: ... here. Incorporate phase from pytest-3.0.
[native-inputs]: Add PYTHON-HYPOTHESIS.
(python-pytest-3.0): Remove variable.
(python2-pytest-3.0): Rename to ...
(python2-pytest): ... this.
[native-inputs]: Add PYTHON2-ENUM34.
* gnu/packages/backup.scm (borg)[native-inputs]: Replace PYTHON-PYTEST-3.0
with PYTHON-PYTEST.
* gnu/packages/calendar.scm (khal): Likewise.
* gnu/packages/databases.scm (python-orator): Likewise.
* gnu/packages/python.scm (python-sphinx-1.6, python-sphinx-1.5.3,
python-pexpect, python-cryptography, python-pyopenssl, python-pytest-warnings,
python-pytest-capturelog, python-pytest-catchlog, python-marshmallow,
python-apispec, python-flasgger, python-pyjwt, python-grako,
python-honcho): Likewise.
* gnu/packages/web.scm (python-internetarchive): Likewise.
2017-10-19 00:16:49 +02:00
Thomas Danckaert 8cff2e7aed
Merge 'master' into core-updates 2017-10-16 19:52:30 +02:00
Efraim Flashner 7658d89bb7
gnu: Add postgresql@9.6.
* gnu/packages/databases.scm (postgresql@9.6): New variable.
2017-10-12 23:39:35 +03:00
Marius Bakke c01ef97594
Merge branch 'master' into core-updates 2017-10-10 22:33:28 +02:00
Marius Bakke 1c055d7258
Merge branch 'staging' 2017-10-10 21:44:32 +02:00
Rutger Helling 231123ee16
gnu: postgresql: Update to 10.0.
* gnu/packages/databases.scm (postgresql): Update to 10.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-10 10:33:26 -04:00