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93833 Commits (9fe1ba50e9b0ea9e8fce63e392a25625fa57d48b)

Author SHA1 Message Date
Ricardo Wurmus 9fe1ba50e9
gnu: r-magic: Update to 1.6-0.
* gnu/packages/cran.scm (r-magic): Update to 1.6-0.
2022-03-15 20:18:44 +01:00
Ricardo Wurmus 7ed3d5d2bd
gnu: r-cvst: Update to 0.2-3.
* gnu/packages/cran.scm (r-cvst): Update to 0.2-3.
2022-03-15 20:18:44 +01:00
Ricardo Wurmus 87981e94f7
gnu: r-circlize: Update to 0.4.14.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.14.
2022-03-15 20:18:44 +01:00
Ricardo Wurmus a743923d23
gnu: r-rcppthread: Update to 2.0.2.
* gnu/packages/cran.scm (r-rcppthread): Update to 2.0.2.
2022-03-15 20:18:44 +01:00
Ricardo Wurmus 79a8f31d8f
gnu: r-glue: Update to 1.6.2.
* gnu/packages/cran.scm (r-glue): Update to 1.6.2.
2022-03-15 20:18:44 +01:00
Ricardo Wurmus 77470c2a34
gnu: r-colorspace: Update to 2.0-3.
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-3.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 86ad25e9ab
gnu: r-jsonlite: Update to 1.8.0.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.0.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus ba4a6487f6
gnu: r-ashr: Update to 2.2-54.
* gnu/packages/cran.scm (r-ashr): Update to 2.2-54.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 17349440cb
gnu: r-clipr: Update to 0.8.0.
* gnu/packages/cran.scm (r-clipr): Update to 0.8.0.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 09957aa2c7
gnu: r-v8: Update to 4.1.0.
* gnu/packages/cran.scm (r-v8): Update to 4.1.0.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 4989e09cc0
gnu: Add r-fstcore.
* gnu/packages/cran.scm (r-fstcore): New variable.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 70c8a412f6
gnu: Add r-spatstat-random.
* gnu/packages/cran.scm (r-spatstat-random): New variable.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 0d5a01ab0f
gnu: r-torch: Update to 0.7.0.
* gnu/packages/cran.scm (r-torch): Update to 0.7.0.
2022-03-15 20:18:43 +01:00
Ricardo Wurmus 95f9c44362
gnu: liblantern: Update to 0.7.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
2022-03-15 20:18:42 +01:00
Ricardo Wurmus d7636c8bb7
gnu: python-pytorch-for-r-torch: Reuse python-pytorch.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use
definition on python-pytorch, thereby updating to 1.10.2.
2022-03-15 20:18:42 +01:00
Ricardo Wurmus 6472ccf4db
gnu: r-leaflet: Update to 2.1.0.
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.0.
2022-03-15 20:18:42 +01:00
Ricardo Wurmus feb6bb28b4
gnu: apache-arrow: Update to 7.0.0.
* gnu/packages/databases.scm (apache-arrow): Update to 7.0.0.
2022-03-15 20:18:42 +01:00
Ricardo Wurmus 79607549e2
gnu: r-shinyjqui: Update to 0.4.1.
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.1.
[source]: Delete minified JavaScript file.
[arguments]: Minify additional JavaScript file from source.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add jquery.ui.touch-punch.js.
2022-03-15 20:18:38 +01:00
Mathieu Othacehe 2543cb4854
images: novena: Fix build.
* gnu/system/images/novena.scm (novena-barebones-os)[kernel]: Use the
linux-libre-arm-generic kernel.
[initrd-modules]: Do not specify any modules as sdhci-esdhc-imx, ahci_imx and
i2c-dev are built-in in the arm-generic kernel.
2022-03-15 13:14:29 +01:00
Vagrant Cascadian af8d568f82
gnu: diffoscope: Update to 207.
* gnu/packages/diffoscope.scm (diffoscope): Update to 207.
2022-03-14 16:06:05 -07:00
Brendan Tildesley 57fe92dded
gnu: crypto++: Update to 8.6.0.
* gnu/packages/crypto.scm (crypto++): Update to 8.6.0.

Note: This release includes a fix for a bug where code using AVX2
instructions produced incorrect encrypted files:

https://github.com/weidai11/cryptopp/issues/1069
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-14 23:32:30 +01:00
Ludovic Courtès 3b80e79f21
transformations: '--tune' prints supported micro-architectures upon error.
* guix/transformations.scm (build-system-with-tuning-compiler): Add
&fix-hint condition when asked for an unsupported micro-architecture.
2022-03-14 23:32:30 +01:00
Ludovic Courtès 15bb35d0c4
gnu: gcc@11: Inherit supported micro-architectures from gcc@10.
Previously, gcc@11 would inherit the 'compiler-cpu-architectures'
property from gcc@8.

* gnu/packages/gcc.scm (gcc-11)[properties]: New field.
2022-03-14 23:32:26 +01:00
Ludovic Courtès e86293d250
gnu: ocaml-lacaml: Do not build with "-march=native".
* gnu/packages/ocaml.scm (ocaml-lacaml)[origin]: Add 'snippet'.
[properties]: New field.
2022-03-14 23:32:19 +01:00
Ludovic Courtès a359f3a49c
build-system/ocaml: Use standard packages as "build inputs".
Conceptually, "standard packages" (GCC, Coreutils, etc.) are "build
inputs".  In the absence of cross-compilation support, this change has
no effect, except for things like '--tune' that expect the compiler to
be among the build inputs.

* guix/build-system/ocaml.scm (lower): Move (standard-packages) from
'host-inputs' to 'build-inputs'.
2022-03-14 23:32:18 +01:00
Guillaume Le Vaillant f8aa76ab1f
gnu: rtl-sdr: Fix udev rules.
This is a followup to bcc13ee8a1.

* gnu/packages/radio.scm (rtl-sdr)[arguments]: Add 'fix-udev-rules' phase.
2022-03-14 15:42:46 +01:00
Efraim Flashner 9ba64d70f1
gnu: gcompris-qt: Update to 2.3.
* gnu/packages/education.scm (gcompris-qt): Update to 2.3.
2022-03-14 16:05:03 +02:00
Guillaume Le Vaillant bcc13ee8a1
gnu: rtl-sdr: Update to 0.6.0.1-5e73f90.
* gnu/packages/radio.scm (rtl-sdr): Update to 0.6.0.1-5e73f90.
2022-03-14 14:23:50 +01:00
Efraim Flashner c0ca63b4da
gnu: coeurl: Add source file-name.
* gnu/packages/curl.scm (coeurl)[source]: Add file-name field.
2022-03-14 12:10:30 +02:00
Mathieu Othacehe 4ba35ccd18
gnu: isc-dhcp: Fix cross-compilation.
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Move config to ...
[native-inputs]: ... here.
2022-03-14 09:46:01 +01:00
Pradana AUMARS 857e5ab222
gnu: Add python-ansicolors.
* gnu/packages/python-xyz.scm (python-ansicolors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13 23:26:31 +01:00
Maxime Devos 2e5c3d91fe
gexp: Correctly handle #$output in 'gexp->approximate-sexp'.
This addresses the following backtrace from
"guix lint -c wrapper-inputs hostapd":

Backtrace:ostapd@2.10 [wrapper-inputs]...
[...]
    174:9  3 (gexp->approximate-sexp #<gexp (modify-phases %standard?>)
In srfi/srfi-1.scm:
   586:17  2 (map1 (#<gexp-output out> #<gexp-input "pkg-config":o?>))
In guix/gexp.scm:
   175:16  1 (_ _)
In ice-9/boot-9.scm:
  1685:16  0 (raise-exception _ #:continuable? _)

ice-9/boot-9.scm:1685:16: In procedure raise-exception:
Throw to key `match-error' with args `("match" "no matching pattern" #<gexp-output out>)'.

* guix/gexp.scm (gexp->approximate-sexp): Handle the case where 'reference' is
  a <gexp-output>,, by returning (*approximate*).
* tests/gexp.scm ("gexp->approximate-sexp, outputs"): Test it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13 23:20:07 +01:00
Maxime Devos 5aec62ee0f
gexp: Correctly handle unquoting S-exp objects.
This fixes a false-positive in the linter:

  guix lint -c 'wrapper-inputs' libaio

* guix/gexp.scm (gexp->approximate-sexp): Allow the 'thing' in <gexp-input> to
  be a sexp, without approximation, by testing if it is a record.
* tests/gexp.scm ("unquoted sexp (not a gexp!)"): Test it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13 23:18:14 +01:00
Cees de Groot fce9f13b54
gnu: elixir: Don't fix Git executable location during Elixir build.
The removed code below affected two locations where Elixir uses Git:

* At build-time, Git is used to see if the build is inside a Git repo and if so, git info
  is added to the build information that Elixir returns with `System.build_info()`. The code
  uses PATH + `git` so the Git version from the inputs is used which is just fine.
* At run-time, Git is used by Mix if, and only if, there are any Git-based dependencies. This
  is not the normal case, and in that sense Git is an optional dependency of Elixir - most
  projects will work just fine without Git being present. Here, too, PATH + `git` is used
  so if there is a need on a user's system to use Git-based dependencies, the user can just
  add the package to the profile and things will just work.

I feel that leaving this alone is cleaner than trying to fix the dependency (if we want to
keep it, it needs to be in propagated-inputs in order to keep Git around; I stumbled upon
this building a project with Git dependencies after doing a `guix gc`. However, given that
using Git dependencies is the exception and I think that minimizing dependencies is nicer
I opted to just remove the substition completely).

* gnu/packages/elixir.scm (elixir)[arguments]: In 'replace-paths' phase,
remove substitutions of "git".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13 23:13:46 +01:00
Julien Lepiller 7bdead3fce
gnu: maven: Update to 3.8.5.
* gnu/packages/maven.scm (maven-pom): Update to 3.8.5.
(maven-model-builder)[arguments]: Build from the subdirectory to work
around a test issue.
(maven-3.0-model-builder)[arguments]: Fix accordingly.
2022-03-13 22:42:19 +01:00
Julien Lepiller 6dbce7d815
gnu: Add maven-parent-pom-35.
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-35): New variable.
2022-03-13 22:41:54 +01:00
Julien Lepiller ecd735f33d
gnu: Add apache-parent-pom-25.
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-25): New
variable.
2022-03-13 22:41:48 +01:00
Julien Lepiller 67a2f6d6d9
gnu: ocaml-ppx-tools: Update to 6.5.
* gnu/packages/ocaml.scm (ocaml-ppx-tools): Update to 6.5.
2022-03-13 22:41:25 +01:00
Julien Lepiller bd9eb9ef27
gnu: dune: Update to 3.0.3.
* gnu/packages/ocaml.scm (dune): Update to 3.0.3.
(dune-configurator)[arguments]: Remove vendored dependencies.
(ocaml4.09-dune-configurator)[arguments]: Extend from dune-configurator.
2022-03-13 22:41:20 +01:00
Jelle Licht c49b410344
gnu: python-pgpy: Update dependencies.
* gnu/packages/python-crypto.scm (python-pgpy)[native-inputs]: Move
python-cryptography, python-pyasn1, python-singledispatch, python-six from
here ...
[propagated-inputs]: ... to here.
2022-03-13 18:09:22 +01:00
Florian Pelz 101ba64904
doc: Fix inappropriate escapes.
* doc/guix.texi (Shells Home Services): Change \" to ".
2022-03-13 14:38:20 +01:00
Ekaitz Zarraga 178ca9ef13
gnu: Add spike.
* gnu/packages/virtualization.scm (spike): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-13 11:02:25 +02:00
jgart f69727278b
gnu: cl-find-port: Update to 0.1-2.811727f and use git-version.
* gnu/packages/lisp-xyz.scm (cl-find-port): Update to 0.1-2.811727f.
[version]: Use git-version.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-03-13 04:41:51 -04:00
jgart 1a36fb51a8
gnu: janet: Update to 1.20.0.
* gnu/packages/lisp.scm (janet): Update to 1.20.0.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-03-13 03:25:50 -04:00
Leo Famulari 44cd0a4f37
gnu: linux-libre 4.9: Update to 4.9.306.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.306.
(linux-libre-4.9-pristine-source): Update hash.
2022-03-12 17:40:10 -05:00
Leo Famulari 5960d07847
gnu: linux-libre 4.14: Update to 4.14.271.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.271.
(linux-libre-4.14-pristine-source): Update hash.
2022-03-12 17:40:10 -05:00
Leo Famulari 1a5f9fe746
gnu: linux-libre 4.19: Update to 4.19.234.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.234.
(linux-libre-4.19-pristine-source): Update hash.
2022-03-12 17:40:10 -05:00
Leo Famulari 7822c77930
gnu: linux-libre 5.4: Update to 5.4.184.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.184.
(linux-libre-5.4-pristine-source): Update hash.
2022-03-12 17:40:09 -05:00
Leo Famulari 317752fedf
gnu: linux-libre 5.10: Update to 5.10.105.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.105.
(linux-libre-5.10-pristine-source): Update hash.
2022-03-12 17:40:09 -05:00
Leo Famulari d642f0b80e
gnu: linux-libre 5.15: Update to 5.15.28.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.28.
(linux-libre-5.15-pristine-source): Update hash.
2022-03-12 17:40:09 -05:00