2c15cb5898
gnu: python-pexpect: Update to 4.8.0.
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* gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0.
[arguments]: Disable failing test.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
5e44011bfb
gnu: perl-mail-sendmail: Add line above definition.
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* gnu/packages/perl.scm (perl-mail-sendmail): Add line.
2020-03-24 20:08:05 +00:00
25022bfd3a
gnu: Add perl-mail-sendmail.
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* gnu/packages/perl.scm (perl-mail-sendmail): New variable.
2020-03-24 19:59:43 +00:00
57e12aad6d
scripts: lint: Handle store connections for lint checkers.
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Rather than individual checkers opening up a connection to the store for each
package to check, if any checker requires a store connection, open a
connection and pass it to all checkers that would use it. This makes running
the derivation checker much faster for multiple packages.
* guix/scripts/lint.scm (run-checkers): Add a #:store argument, and pass the
store to checkers if they require a store connection.
(guix-lint): Establish a store connection if any checker requires one, and
pass it through to run-checkers.
2020-03-24 19:47:46 +00:00
7826fbc02b
lint: Add a #:store argument to check-derivation
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This can then be used to avoid opening up a store connection each time a
package needs checking.
* guix/lint.scm (check-derivation): Add a #:store argument, and pull the
handling of the store connection out of the try function.
2020-03-24 19:47:46 +00:00
d84ad6a24e
lint: Mark the derivation checker as requiring a store connection.
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* guix/lint.scm (%local-checkers): Mark the derivation checker as requiring a
store connection.
2020-03-24 19:47:46 +00:00
3874dc5ef2
lint: Add a requires-store? field to the checker record.
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This can then be used to mark checkers that require a store connection, which
will enable passing a connection in, avoiding the overhead of establishing a
connection inside the check function when it's run for lots of different
packages.
* guix/lint.scm (<lint-checker>): Add requires-store? to the record type.
2020-03-24 19:47:43 +00:00
b14c234c0d
gnu: Add Docusign API Python client.
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* gnu/packages/python-xyz.scm (python-docusign-esign): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 15:36:20 -04:00
be743fc0fd
doc: Document that a working environment for building Guix requires "--pure".
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* doc/guix.texi (Invoking guix environment): Document that a working
environment for building Guix requires "--pure".
2020-03-24 19:25:25 +01:00
637db76d7a
guix system: Fix mistaken 'guix pull' warning upon 'reconfigure'.
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Fixes <https://bugs.gnu.org/38196 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* guix/scripts/system.scm (maybe-suggest-running-guix-pull): Check
whether 'current-profile' returns true instead of checking for the
existence of ~root/.config/guix/current. That way, "sudo guix system
reconfigure" no longer emits a warning in that case.
2020-03-24 18:54:41 +01:00
72a5cc5358
gnu: automake: Add version 1.16.2.
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* gnu/packages/autotools.scm (automake-1.16.2): New variable.
2020-03-24 18:03:18 +01:00
53c594cb3f
pack: Do not store extended attributes in squashfs images.
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* guix/scripts/pack.scm (squashfs-image)[build](mksquashfs): Pass "-no-xattrs".
2020-03-24 16:56:19 +01:00
8465f1f680
ui: 'show-manifest-transaction' tabulates package lists for install/remove.
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It also removes the store file name from the output.
* guix/ui.scm (show-manifest-transaction)[package-strings]: Rewrite to
use 'tabulate'. Remove 'item' parameter and adjust callers.
2020-03-24 15:44:45 +01:00
3e5ab0a7a9
ui: 'show-manifest-transaction' tabulates upgraded package lists.
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This also changes "1.0.0 → 1.0.0" to "(dependencies changed)", which is
probably less confusing.
* guix/ui.scm (tabulate): New procedure.
(show-manifest-transaction)[upgrade-string]: Rewrite to take lists of
names, versions, and outputs instead of single elements. Use
'tabulate'. Adjust callers accordingly.
2020-03-24 15:44:45 +01:00
cf2b91aad0
import: crate: Deduplicate dependencies.
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* guix/import/crate.scm (crate-version-dependencies): Deduplicate crate dependencies.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
b488b64a3e
gnu: Add guile3.0-semver.
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* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
08d5341b1f
gnu: nano: Update to 4.9.
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* gnu/packages/nano.scm (nano): Update to 4.9.
2020-03-24 15:47:58 +02:00
54a9fe3429
doc: Fix typo in example.
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* doc/guix.texi (Base Services)[file->udev-rule]: Correct misspelt
"user-account".
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:10:43 +01:00
022767d7c1
doc: Fix typo.
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* doc/guix.texi (Invoking guix time-machine): Fix typo.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:07:17 +01:00
151f3d416c
gnu: Add qgis.
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* gnu/packages/geo.scm (qgis): New variable.
Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2020-03-24 11:42:41 +01:00
d13d28265f
licenses: Add QWT 1.0 license.
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* guix/licenses.scm (qwt1.0): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:41 +01:00
5d33e789c2
licenses: Add Open Government Licence for Public Sector Information.
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* guix/licenses.scm (ogl-psi1.0): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:40 +01:00
f7ac2fe1ce
gnu: Add saga.
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* gnu/packages/geo.scm (saga): New variable.
2020-03-24 11:42:40 +01:00
9fce591479
gnu: Add grass.
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* gnu/packages/geo.scm (grass): New variable.
2020-03-24 11:42:40 +01:00
efcb05083f
gnu: Add python-owslib.
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* gnu/packages/python-xyz.scm (python-owslib): New variable.
2020-03-24 11:42:40 +01:00
b0d1da986b
gnu: r-harmony: Update to 0.1.
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* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
2020-03-24 11:06:01 +01:00
8ff6386491
gnu: r-shiny: Update to 1.4.0.2.
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* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
2020-03-24 11:06:01 +01:00
5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
c649d31957
gnu: r-tximport: Update to 1.14.2.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
c10bef9bd3
gnu: r-caret: Update to 6.0-86.
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* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
1e40a27465
gnu: r-batchtools: Update to 0.9.13.
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* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
6005efa40f
gnu: r-mcmc: Update to 0.9-7.
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* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
d3836473de
gnu: r-proc: Update to 1.16.2.
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* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
2020-03-24 11:06:00 +01:00
c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1.
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* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
2f445f0da3
gnu: r-radiant-data: Update to 1.3.4.
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* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
2020-03-24 11:06:00 +01:00
ff248f41cb
gnu: r-patchwork: Update to 1.0.0.
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* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5.
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* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
2020-03-24 11:06:00 +01:00
f7a21df523
gnu: r-robustbase: Update to 0.93-6.
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* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
2020-03-24 11:06:00 +01:00
7e349066e6
gnu: r-hmisc: Update to 4.4-0.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
2020-03-24 11:06:00 +01:00
670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1.
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* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
2020-03-24 11:06:00 +01:00
d16a4d1f96
gnu: r-dt: Update to 0.13.
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* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:05:59 +01:00
f871696911
gnu: r-locfit: Update to 1.5-9.2.
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* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
2020-03-24 11:05:59 +01:00
e0d6a7da74
gnu: Add r-randomizr.
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* gnu/packages/cran.scm (r-randomizr): New variable.
2020-03-24 11:05:59 +01:00
47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb.
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* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
option in the build phase.
2020-03-24 09:31:43 +01:00
0f96fd6454
gnu: dialog: Update to 1.3-20200228.
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* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-23 21:17:55 -04:00
aae5f89db0
gnu: Git: Update to 2.26.0.
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* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
2020-03-23 21:17:46 -04:00
acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input."
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This reverts commit 4233e74b39
2020-03-23 21:51:25 +01:00
Tanguy Le Carrour
Paul Garlick
Christopher Baines
Josh Marshall
Danny Milosavljevic
Ludovic Courtès
Ludovic Courtès
Martin Becze
Efraim Flashner
Naga Malleswari
Guillaume Le Vaillant
Arun Isaac
Ricardo Wurmus
Michael Rohleder
Leo Famulari
Mathieu Othacehe