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Author SHA1 Message Date
Ricardo Wurmus
7cdad00e30
gnu: r-scran: Update to 1.30.2.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2.

Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
2024-01-30 16:59:52 +01:00
Ricardo Wurmus
aa7950070b
gnu: r-bioccheck: Update to 1.38.2.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest.

Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
8d8eec7f9d
gnu: r-flowcore: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1.

Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
9e1e462746
gnu: r-rsubread: Update to 2.16.1.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1.

Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
ca6e432089
gnu: r-edger: Update to 4.0.12.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.

Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
4df162962d
gnu: r-biostrings: Update to 2.70.2.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.

Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.

Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1.
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.

Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
6064758fdf
gnu: r-conos: Update to 1.5.1.
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.1.

Change-Id: If05dea04f6abb3c78504ab46aa052aeb288a7c8c
2024-01-25 09:43:02 +01:00
Ricardo Wurmus
bafc6efe48
gnu: r-flowstats: Update to 4.14.1.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.1.

Change-Id: I0a5d93cb08d169759b3f3817ab9b68b76fd5883f
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
1849ed7487
gnu: r-flowworkspace: Update to 4.14.2.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.2.

Change-Id: I7d47b89fedf207b930fc8bef6aedcbce4628a2d9
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
522a646714
gnu: r-gosemsim: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.1.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Idf93e061ef43c2900a96fa9cafeaff95d13fa3be
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
500fc9e891
gnu: r-rhtslib: Update to 2.4.1.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.1.

Change-Id: If0da0bbfbbfcb2f41b354ba1772967f9fee778ca
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
c61e835022
gnu: r-edger: Update to 4.0.11.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.11.

Change-Id: I27638e6082286fa6e7876ce29ecf272d88402946
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
2d331f9ba0
gnu: r-tximportdata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.30.0.

Change-Id: Id02981fc94304cade5dbdc4c13a78d7155e62408
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
2c5ea54d89
gnu: r-tcgabiolinksgui-data: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.22.0.

Change-Id: Icb4d98fb51bea7d14500b84928c3cd8876161d7c
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
ab9f9b582e
gnu: r-sesamedata: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.20.0.

Change-Id: Idc8ff7679495ede0dd037ef393300c7fe4787610
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
196e1f9025
gnu: r-parathyroidse: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.40.0.

Change-Id: I2a012832f1d0ea4468497ed82c528af10d660391
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
71c4d03835
gnu: r-curatedtcgadata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.0.

Change-Id: If094ca958ff73b6aecd39c3d91042e9e75eb2075
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
ffd1da975f
gnu: r-gagedata: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.40.0.

Change-Id: Ifdbcee3c7c6c354530d62cc79f05cf30be432f3a
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
e9a99d768b
gnu: r-affydata: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.50.0.

Change-Id: I653e146ff884bd72771ed779c4d9d65b03a7fdd9
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
aef69bfc03
gnu: r-all: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.44.0.

Change-Id: I9f2817b571d2c42d57927370b51319e52388a3b5
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
1d0674befe
gnu: r-hsmmsinglecell: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.22.0.

Change-Id: I541a4637f7ec9b6e85e52c8f222002adef230a50
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
54efc5bd86
gnu: r-pasilla: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.30.0.

Change-Id: I3d309814bc0237181540e1c84ad8feca34f2fcef
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
1deaa74a6f
gnu: r-msigdb: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.10.0.

Change-Id: I32ad805ff92e7084eb682c239037978f183c323e
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
88beafd5dc
gnu: r-msdata: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0.

Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
13c2e3c9e4
gnu: r-minfidata: Update to 0.48.0.
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.48.0.

Change-Id: I8485d570629d23b294a9ea4143a88ed91ae737af
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
cbb019eef6
gnu: r-mousegastrulationdata: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0.

Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
55b3f66131
gnu: r-macrophage: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0.

Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
0af8e69b32
gnu: r-italicsdata: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0.

Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f4f7b82c5e
gnu: r-illumina450probevariants-db: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0.

Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
da790d92e5
gnu: r-hdcytodata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0.

Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
c916f39b5c
gnu: r-genomationdata: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0.

Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
8369898fb0
gnu: r-genelendatabase: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0.

Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
95c3baf59f
gnu: r-flowsorted-blood-epic: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0.

Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
43e6cc3189
gnu: r-flowsorted-blood-450k: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0.

Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
4c4f07ca26
gnu: r-copyhelper: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0.

Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f0591739ce
gnu: r-chromstardata: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0.

Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
225f49fb30
gnu: r-champdata: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0.

Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
7b5db44490
gnu: r-celldex: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0.

Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
1aac5e7bc8
gnu: r-breakpointrdata: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0.

Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
6c1bb9047e
gnu: r-biscuiteerdata: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0.
[propagated-inputs]: Add r-genomicranges.

Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
cd5a4ac6df
gnu: r-bladderbatch: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0.

Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
09ee801fe9
gnu: r-bcellviper: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0.

Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
ee966f03d5
gnu: r-arrmdata: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0.

Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
9512db59ab
gnu: r-aneufinderdata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0.

Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
8f70c2352d
gnu: r-adductdata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0.

Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
b6fb97a250
gnu: r-pfam-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0.

Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f16f8105e8
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0.

Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
5265421826
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5.
[propagated-inputs]: Add r-genomeinfodb.

Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
2024-01-22 13:54:45 +01:00