Ricardo Wurmus
505aac07c4
gnu: r-org-mm-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0.
Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f13e407689
gnu: r-org-dr-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0.
Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
8445ad15ec
gnu: r-org-dm-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0.
Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
0adeabcf53
gnu: r-org-ce-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0.
Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
297fc0d76c
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1.
Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
c5a934df85
gnu: r-go-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0.
Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
d9de950ac6
gnu: r-genomeinfodbdata: Update to 1.2.11.
...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11.
Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
2ee9cce50f
gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3.
Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
6ee0d63dfc
gnu: r-reactome-db: Update to 1.86.2.
...
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2.
Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
287c5b085b
gnu: r-org-sc-sgd-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0.
Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
8ec5a25eff
gnu: r-org-bt-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0.
Change-Id: I4385882eeb83326af88141b301f892632f6cf678
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
d2573f4e28
gnu: r-org-eck12-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0.
Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
2024-01-22 13:54:44 +01:00
Ricardo Wurmus
e775f704c8
gnu: Add r-bodymaprat.
...
* gnu/packages/bioconductor.scm (r-bodymaprat): New variable.
Change-Id: I6843b957d5722f4c5460796ba41effee5717ae45
2024-01-21 23:54:23 +01:00
Ricardo Wurmus
1d00a9edff
gnu: Add r-protgear.
...
* gnu/packages/bioconductor.scm (r-protgear): New variable.
Change-Id: Ic6d5cae65d4f76df4488ee2462071ba68b50c184
2024-01-21 11:08:13 +01:00
Ricardo Wurmus
0facea431a
gnu: Add r-netgsa.
...
* gnu/packages/bioconductor.scm (r-netgsa): New variable.
Change-Id: I79b842854db80bbacdb8ff4c9fccfabdfc04d779
2024-01-21 08:33:56 +01:00
Ricardo Wurmus
6648e34342
gnu: Add r-rcy3.
...
* gnu/packages/bioconductor.scm (r-rcy3): New variable.
Change-Id: Ia295e8a174f65c8378ae83bdc1dde2877a48ff45
2024-01-21 08:30:40 +01:00
Ricardo Wurmus
8ca35ca44f
gnu: r-cytolib: Update to 2.14.1.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1.
[source]: Do not unbundle included boost.
[arguments]: Remove.
[inputs]: Remove boost.
Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895
2024-01-21 00:17:45 +01:00
Ricardo Wurmus
9072f27f5d
gnu: r-org-hs-eg-db: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0.
Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed
2024-01-20 19:52:40 +01:00
Ricardo Wurmus
d441454ba8
gnu: Add r-methylclockdata.
...
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable.
Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
2024-01-20 19:52:24 +01:00
Ricardo Wurmus
2b3a21c55f
gnu: Add r-experimenthubdata.
...
* gnu/packages/bioconductor.scm (r-experimenthubdata): New variable.
Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18
2024-01-20 19:52:05 +01:00
Ricardo Wurmus
c4838027b4
gnu: Add r-jaspar2016.
...
* gnu/packages/bioconductor.scm (r-jaspar2016): New variable.
Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2
2024-01-20 19:50:13 +01:00
Ricardo Wurmus
6f93502ced
gnu: Add r-genomicstate.
...
* gnu/packages/bioconductor.scm (r-genomicstate): New variable.
Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
2024-01-20 19:45:26 +01:00
Ricardo Wurmus
c410d4e268
gnu: Add r-ensdb-hsapiens-v79.
...
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable.
Change-Id: I773615df66194ddb195f013f7000d175ac07d095
2024-01-20 19:45:26 +01:00
Ricardo Wurmus
eb1d80ac77
gnu: Add r-trnadbimport.
...
* gnu/packages/bioconductor.scm (r-trnadbimport): New variable.
Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea
2024-01-19 23:55:43 +01:00
Ricardo Wurmus
74ce9d7e3b
gnu: Add r-trna.
...
* gnu/packages/bioconductor.scm (r-trna): New variable.
Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0
2024-01-19 23:55:43 +01:00
Ricardo Wurmus
1d56a24509
gnu: Add r-modstrings.
...
* gnu/packages/bioconductor.scm (r-modstrings): New variable.
Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499
2024-01-19 23:55:43 +01:00
Ricardo Wurmus
5c10649a50
gnu: Add r-structstrings.
...
* gnu/packages/bioconductor.scm (r-structstrings): New variable.
Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27
2024-01-19 23:55:43 +01:00
Ricardo Wurmus
d8c718d44c
gnu: Add r-flames.
...
* gnu/packages/bioconductor.scm (r-flames): New variable.
Change-Id: I551a8f9d7de16e2281898b9541572dd244aadc36
2024-01-19 23:55:43 +01:00
Ricardo Wurmus
fdc6c6e29f
gnu: Add r-sictools.
...
* gnu/packages/bioconductor.scm (r-sictools): New variable.
Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7
2024-01-18 23:10:39 +01:00
Ricardo Wurmus
f1aaaf2ac1
gnu: r-tximeta: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2.
Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0
2024-01-18 16:01:55 +01:00
Ricardo Wurmus
b19e208c17
gnu: r-basilisk: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2.
Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99
2024-01-18 16:01:55 +01:00
Ricardo Wurmus
cde5a13151
gnu: r-scran: Update to 1.30.1.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1.
Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
eee867139c
gnu: r-xcms: Update to 4.0.2.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2.
Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
a162ff0fa4
gnu: r-genomicalignments: Update to 1.38.2.
...
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2.
Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
5ad5cb8c6e
gnu: r-edger: Update to 4.0.9.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9.
Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
c64c5a33b2
gnu: r-dss: Update to 2.50.1.
...
* gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1.
Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
e3efa67a2e
gnu: r-densvis: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1.
Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
85cc64bfb8
gnu: r-animalcules: Update to 1.18.2.
...
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2.
[propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit.
Change-Id: Idd769a9608154b66871a38701a49e84f008f849c
2024-01-18 16:01:54 +01:00
Ricardo Wurmus
59706daf02
gnu: r-cytolib: Unbundle boost.
...
* gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of
boost.
[arguments]: Change build system to link with existing boost library.
[inputs]: Add boost, openblas, protobuf, and zlib.
Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d
2024-01-11 17:10:24 +01:00
Ricardo Wurmus
002102983f
gnu: r-singler: Update to 2.4.1.
...
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1.
Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e
2024-01-11 14:41:31 +01:00
Ricardo Wurmus
c04ec0ed02
gnu: r-biocneighbors: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2.
Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f
2024-01-11 14:41:31 +01:00
Ricardo Wurmus
6972aba5ea
gnu: r-inspect: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1.
[propagated-inputs]: Remove r-gdata; add r-readxl.
Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd
2024-01-11 14:41:31 +01:00
Ricardo Wurmus
4ca94066f1
gnu: r-genomicalignments: Update to 1.38.1.
...
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1.
Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40
2024-01-11 14:41:31 +01:00
Ricardo Wurmus
6e21d78b32
gnu: r-edger: Update to 4.0.6.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6.
Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2
2024-01-11 14:41:31 +01:00
nafkhamdc
c1fda6cf61
gnu: Add r-jaspar2020.
...
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10 18:39:13 +01:00
nafkhamdc
feab3943c1
gnu: Add r-dsb.
...
* gnu/packages/bioconductor.scm (r-dsb): New variable.
Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10 18:39:13 +01:00
nafkhamdc
2ec29a8c11
gnu: Add r-escape.
...
* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-10 18:39:13 +01:00
Ricardo Wurmus
5cec983e04
gnu: r-edger: Update to 4.0.5.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5.
Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9
2024-01-05 17:17:33 +01:00
Ricardo Wurmus
d2a6480e8e
gnu: Add r-scrnaseq.
...
* gnu/packages/bioconductor.scm (r-scrnaseq): New variable.
Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c
2024-01-05 08:57:53 +01:00
Ricardo Wurmus
e8814809c2
gnu: Add r-toast.
...
* gnu/packages/bioconductor.scm (r-toast): New variable.
Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
2024-01-02 19:23:51 +01:00
