aa7eeabe9a
gnu: Add r-naturalsort.
...
* gnu/packages/cran.scm (r-naturalsort): New variable.
2021-05-04 21:34:24 +02:00
4ca8a00263
gnu: Exim: Update to 4.94.2 [security fixes].
...
Fixes CVE-2020-{27216,28007,28008,28009,28010,28011,28012,28013,28014,28015,
28016,28017,28018,28019,28020,28021,28022,28023,28024,28025,28026}.
See the upstream security advisory for more information:
https://exim.org/static/doc/security/CVE-2020-qualys/21nails.txt
* gnu/packages/mail.scm (exim): Update to 4.94.2.
2021-05-04 11:42:07 -04:00
721c5a8709
gnu: s6-linux-init: Update to 1.0.6.3.
...
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.6.3.
2021-05-04 16:14:15 +02:00
9a12fbebb9
gnu: ethtool: Update to 5.12.
...
* gnu/packages/networking.scm (ethtool): Update to 5.12.
2021-05-04 16:12:44 +02:00
8ff0d32df6
gnu: gthumb: Update to 3.10.3.
...
* gnu/packages/gnome.scm (gthumb): Update to 3.10.3.
2021-05-04 16:09:03 +02:00
9432c40f8d
gnu: libhandy: Update to 1.2.2.
...
* gnu/packages/gnome.scm (libhandy): Update to 1.2.2.
2021-05-04 15:58:38 +02:00
06cf2fc01f
gnu: busybox: Update to 1.33.1.
...
* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-04 15:56:27 +02:00
a49a007328
gnu: indi: Stop returning #t from phases.
...
* gnu/packages/astronomy.scm (indi)[arguments]: Remove #t phase return values.
2021-05-04 15:40:33 +02:00
9a40c1d5bb
gnu: indi: Respect #:tests?.
...
* gnu/packages/astronomy.scm (indi)[arguments]: Respect #:tests? in the
'check phase.
2021-05-04 15:40:33 +02:00
7f540e3ce0
gnu: indi: Check slightly more functionally.
...
* gnu/packages/astronomy.scm (indi)[arguments]: Substitute
WITH-DIRECTORY-EXCURSION for double CHDIR.
2021-05-04 15:40:33 +02:00
ead465a312
gnu: indi: Update to 1.9.0.
...
* gnu/packages/astronomy.scm (indi): Update to 1.9.0.
2021-05-04 15:40:32 +02:00
abdb0210bd
gnu: bcachefs-tools: Prepare for cross-compilation.
...
* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]:
Use CC-FOR-TARGET and PKG-CONFIG-FOR-TARGET.
2021-05-04 15:40:32 +02:00
3d25bc8ae4
gnu: bcachefs-tools: Update to 0.1-6.a14d39d.
...
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-6.a14d39d.
2021-05-04 15:40:32 +02:00
71f15ca871
file-systems: Rewrite comment.
...
* gnu/build/file-systems.scm (read-bcachefs-superblock): Make comment
less damned negative.
2021-05-04 15:40:32 +02:00
b6269fb7bc
file-systems: Handle abnormal ‘bcachefs fsck’ exits.
...
* gnu/build/file-systems.scm (check-bcachefs-file-system): Handle a STATUS:EXIT-VAL of #F.
2021-05-04 15:40:32 +02:00
2fc9d51381
gnu: bitcoin-core@0.21: Update to 0.21.1.
...
* gnu/packages/finance.scm (bitcoin-core-0.21): Update to 0.21.1.
2021-05-04 15:40:31 +02:00
bee797fa93
gnu: Add r-guitar.
...
* gnu/packages/bioconductor.scm (r-guitar): New variable.
2021-05-04 15:37:04 +02:00
6cd9cb0e13
gnu: python-nbconvert: Simplify build phase.
...
* gnu/packages/python-xyz.scm (python-nbconvert)[arguments]: Simplify build
phase "fix-paths-and-tests" by using WHICH; remove final boolean and reindent.
2021-05-04 15:17:18 +02:00
82c5d929b9
gnu: python-nbconvert: Use modular texlive packages.
...
* gnu/packages/python-xyz.scm (python-nbconvert)[inputs]: Remove texlive.
[native-inputs]: Add texlive-union.
2021-05-04 15:17:18 +02:00
d7ef77c8ed
gnu: Add texlive-eurosym.
...
* gnu/packages/tex.scm (texlive-eurosym): New variable.
2021-05-04 15:17:17 +02:00
50bc363a76
gnu: Add texlive-tcolorbox.
...
* gnu/packages/tex.scm (texlive-tcolorbox): New variable.
2021-05-04 15:17:17 +02:00
be50619b30
gnu: Add texlive-adjustbox.
...
* gnu/packages/tex.scm (texlive-adjustbox): New variable.
2021-05-04 15:17:17 +02:00
9855f2b975
gnu: Add texlive-collectbox.
...
* gnu/packages/tex.scm (texlive-collectbox): New variable.
2021-05-04 15:17:17 +02:00
2f99cf3f38
gnu: Add texlive-storebox.
...
* gnu/packages/tex.scm (texlive-storebox): New variable.
2021-05-04 15:17:17 +02:00
8e92a17431
gnu: Add texlive-ifoddpage.
...
* gnu/packages/tex.scm (texlive-ifoddpage): New variable.
2021-05-04 15:17:17 +02:00
3c51abe059
gnu: Add texlive-titling.
...
* gnu/packages/tex.scm (texlive-titling): New variable.
2021-05-04 15:17:17 +02:00
7ca996c3f5
gnu: sbcl-trivial-backtrace: Move lift to native-inputs.
...
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to...
[native-inputs]: ... here.
2021-05-04 13:58:31 +02:00
4c2f810f97
gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bd
...
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update
to 1.1.0-1.6eb65bd.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04 13:53:03 +02:00
f46b6d6487
gnu: sbcl-static-dispatch: Update to 0.5.
...
* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5.
[version]: Use annotated tag of the latest release in upstream.
[native-inputs]: Remove prove, add fiveam.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04 13:43:02 +02:00
36d4877041
gnu: sbcl-cl-environments: Update to 0.4.
...
* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4.
[version]: Use annotated tag instead of direct commit, there are
upstream releases available now.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04 13:36:55 +02:00
570b3d32b9
etc: Break long lines in commit messages.
...
* etc/committer.scm.in (break-string): New procedure.
(change-commit-message): Use it.
2021-05-04 11:52:23 +02:00
7694acebd1
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
2021-05-04 10:11:34 +02:00
b602ec9fba
gnu: r-mixomics: Update to 6.14.1.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1.
[propagated-inputs]: Add r-biocparallel.
2021-05-04 09:47:37 +02:00
4286233e77
gnu: r-catalyst: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
2021-05-04 09:47:37 +02:00
2191a414ea
gnu: r-scran: Update to 1.18.7.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
2021-05-04 09:47:37 +02:00
3c59d34107
gnu: r-biocpkgtools: Update to 1.8.2.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
2021-05-04 09:47:36 +02:00
b75b3ba2c7
gnu: r-experimenthub: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
2021-05-04 09:47:36 +02:00
c1942727cf
gnu: r-bioassayr: Update to 1.28.3.
...
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
2021-05-04 09:47:36 +02:00
5bd5f755f2
gnu: r-universalmotif: Update to 1.8.5.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
2021-05-04 09:47:36 +02:00
b410f072b5
gnu: r-icobra: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
2021-05-04 09:47:36 +02:00
b2bdc2f130
gnu: r-interactionset: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
2021-05-04 09:47:36 +02:00
390098ddd4
gnu: r-systempiper: Update to 1.24.6.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
2021-05-04 09:47:36 +02:00
fc1aef2ccd
gnu: r-genomeinfodb: Update to 1.26.7.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
2021-05-04 09:47:36 +02:00
8bd3170bcf
gnu: r-biocgenerics: Update to 0.36.1.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
2021-05-04 09:47:36 +02:00
d4051161e7
gnu: r-ensembldb: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1.
2021-05-04 09:47:36 +02:00
7072dc8c53
gnu: r-gage: Update to 2.40.2.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2.
2021-05-04 09:47:36 +02:00
3b002a49d4
gnu: r-annotationhub: Update to 2.22.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1.
2021-05-04 09:47:36 +02:00
8ddbf984a2
gnu: r-future-apply: Set HOME directory variable.
...
* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME".
2021-05-04 09:47:36 +02:00
553767d02a
gnu: r-matrixstats: Set HOME directory variable.
...
* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase
"set-HOME".
2021-05-04 09:47:32 +02:00
ec4012c582
gnu: sequoia: Update to 1.1.0.
...
* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove
phase "package", add phases "fix-rand-dependency" and "fix-permissions".
2021-05-04 09:44:14 +02:00
Roel Janssen
Leo Famulari
Tobias Geerinckx-Rice
Ricardo Wurmus
Guillaume Le Vaillant
Sharlatan Hellseher
Hartmut Goebel