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51336 Commits (aebcbb27bc2f192cc06163251bab66a4ceb7b7d6)

Author SHA1 Message Date
Jan Nieuwenhuizen aaa4cb0cad
gnu: commencement: glibc-final: Allow gnumach-headers references.
* gnu/packages/commencement.scm (glibc-final): Allow gnumach-headers-boot0
references for the Hurd.
2020-03-26 12:59:33 +01:00
Jan Nieuwenhuizen 1320885ffa
gnu: commencement: gnumach-headers-boot0: Update to 1.8-116-g28b53508.
* gnu/packages/commencement.scm (gnumach-headers-boot0): Update to
1.8-116-g28b53508.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen 61249ba27c
gnu: commencement: hurd-source: Update to latest git.
* gnu/packages/commencement.scm (hurd-source-version): Update to
0.9-229-ga1efcee8.
(hurd-source-boot0): Update url to updated lilypond tarball.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen 05a852d8dd
gnu: commencement: glibc-intermediate: Build fixes for the Hurd.
* gnu/packages/commencement.scm (glibc-intermediate): Configure with
--disable-werror, update pthreads workaround.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen 0c7b63e065
gnu: commencement: hurd-minimal-boot0: Build from tarball.
The 'hurd-minimal' package (via hurd-headers) now uses a git checkout and
added dependencies on autoconf, automake and teiinfo to build.  Using those in
commencement creates a bootstrap loop.  So, revert to a tarball release.

* gnu/packages/commencement.scm (hurd-minimal-boot0): Build from tarball;
remove autoconf, automake, texinfo bootstrap dependencies.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen c9c5e032c3
gnu: commencement: hurd-headers-boot0: Build from tarball.
The 'hurd-headers' package now uses a git checkout and added dependencies on
autoconf and automake to build.  Using those in commencement creates a
bootstrap loop.  So, revert to a tarball release.

* gnu/packages/commencement.scm (hurd-version-boot0, hurd-source-boot0): New
variable.
(hurd-headers-boot0): Use it to build from tarball; remove autoconf, automake,
texinfo bootstrap dependencies.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen a50bbf44c7
gnu: commencement: gnumach-headers-boot0: Build from tarball.
The 'gnumach-headers' package now uses a git checkout and added dependencies
on autoconf, automake and texinfo to build.  Using those in commencement
creates a bootstrap loop.  So, revert to a tarball release.

* gnu/packages/commencement.scm (gnumach-headers-boot0): Build from tarball;
remove autoconf, automake, texinfo bootstrap dependencies.
2020-03-26 12:59:32 +01:00
Jan Nieuwenhuizen 846f5da129
gnu: make: Support for the Hurd.
* gnu/packages/base.scm (gnu-make): Use fork/exec rather than posix_spawn on
the Hurd.  Also, add __alloca linkage workaround.
2020-03-26 12:59:31 +01:00
Jan Nieuwenhuizen 9820d6eda6
gnu: java-jansi-native: Compile fix for the Hurd.
* gnu/packages/java.scm (java-jansi-native): Add catch-all clause;
fixes running guix refresh.
2020-03-26 12:59:31 +01:00
Efraim Flashner 6741f543e6
gnu: bootstrap: Add support for the Hurd.
On 3342a1182b
   gnu: make-bootstrap: Use _IOLBF on Guile 2.0 only.

Run
    ./pre-inst-env guix build --target=i586-pc-gnu bootstrap-tarballs --verbosity=1

Producing

    /gnu/store/lhca65c997pvic5cfrpm0dasniwqlg2a-bootstrap-tarballs-0

With guix hash -rx /gnu/store/lhca65c997pvic5cfrpm0dasniwqlg2a-bootstrap-tarballs-0

    07jnq2by98f2a45k8wd2gj62iazvwfa4z7p3w3id4m1g0fdsvc3b

* gnu/packages/bootstrap.scm (%bootstrap-executables): Add entries for the
Hurd.
(bootstrap-executable-url): Use lilypond url for the Hurd.
(bootstrap-guile-url-path): Likewise.
(bootstrap-guile-hash): Add entry for the Hurd.
(%bootstrap-coreutils&co): Likewise.
(%bootstrap-binutils): Likewise.
(%bootstrap-glibc): Likewise.
(%bootstrap-gcc): Likewise.
* guix/packages.scm (%supported-systems): Add i586-gnu.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2020-03-26 12:58:51 +01:00
Efraim Flashner 315b98b9eb
gnu: youtube-viewer: Don't build gtk3 front-end.
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
2020-03-26 12:56:10 +02:00
Efraim Flashner b5a26299f7
gnu: youtube-viewer: Update to 3.7.5.
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
2020-03-26 12:56:07 +02:00
Mathieu Othacehe b03ebdbc7c
tests: install: Add %test-gui-installed-desktop-os-encrypted.
* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services,
(installation-target-os-for-gui-tests): new procedure,
(installation-target-desktop-os-for-gui-tests): new procedure,
(guided-installation-test): add target-os and desktop? arguments. Use
target-os instead of the previous os variable. Pass desktop? argument to
gui-test-program.
(%test-gui-installed-os): Adapt accordingly,
(%test-gui-installed-os-encrypted): ditto,
(%test-gui-installed-desktop-os-encrypted): new exported variable.
2020-03-26 11:53:50 +01:00
Mathieu Othacehe 7a1a10dbd4
installer: tests: Use a filter to select desktop-environments.
* gnu/installer/tests.scm (choose-services): Turn desktop-environments list
into a choose-desktop-environment procedure. This way, it is easier to select
all desktop-environments or none, in the same way as choose-network-service?
and choose-network-management-tool? arguments.
2020-03-26 11:53:50 +01:00
Pierre Neidhardt 62c27e09f0
gnu: emacs-helm-exwm: Update to 0.0.2.
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26 09:00:46 +01:00
Ricardo Wurmus 90fb592321
gnu: r-argon2: Fix case in synopsis and use full sentence in description.
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 5c3902a762
gnu: r-getpass: Change case in synopsis and adjust indentation.
* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus f03e62c12d
gnu: r-remoter: Fix indentation.
* gnu/packages/cran.scm (r-remoter): Fix indentation.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 9bde1b1348
gnu: r-remoter: Use lower case in the synopsis.
* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
2020-03-26 08:28:41 +01:00
Jan Nieuwenhuizen 3342a1182b
gnu: make-bootstrap: Use _IOLBF on Guile 2.0 only.
* gnu/packages/make-bootstrap.scm (%binutils-static-stripped, %gcc-stripped,
%bootstrap-tarballs)[arguments]: Wrap use of '_IOLBF' in 'cond-expand' and use
'line instead on Guile > 2.0.
2020-03-26 07:43:36 +01:00
Vagrant Cascadian 730a4b10fa
gnu: linux-libre-5.4-source: Add patch to support pinebook pro.
* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
2020-03-25 18:59:25 -07:00
Mark H Weaver 2a57b72251
gnu: linux-libre: Update deblob scripts.
* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
2020-03-25 20:39:05 -04:00
Mark H Weaver 5cc6271d22
gnu: linux-libre: Update to 5.4.28.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-25 20:37:38 -04:00
Mark H Weaver 1d777c7837
gnu: linux-libre@4.19: Update to 4.19.113.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-25 20:36:25 -04:00
Leo Famulari 7d57a190f6
gnu: icu4c: Fix CVE-2020-10531.
* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
2020-03-25 17:53:59 -04:00
Todor Kondić 0c549393b9
gnu: Add r-remoter.
* gnu/packages/cran.scm (r-remoter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
Todor Kondić 6ad80b2a6b
gnu: Add r-getpass.
* gnu/packages/cran.scm (r-getpass): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
Todor Kondić 49a8ef8ae1
gnu: Add r-argon2.
* gnu/packages/cran.scm (r-argon2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:45:54 -04:00
Nicolas Goaziou 0557618dbe
gnu: Add emacs-chronometrist.
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
2020-03-25 17:34:38 +01:00
Ricardo Wurmus 8b19fa51a4
gnu: abseil-cpp: Update to 20200225.1.
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
2020-03-25 16:29:26 +01:00
Ludovic Courtès 98e9ed8a3f
gnu: gnu-pw-mgr: Build reproducibly.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove
AUTOGEN so that man pages are not regenerated with a fresh date.
2020-03-25 16:02:53 +01:00
Ricardo Wurmus eb019af8d8
tests/nfs: Fix use of WAIT-FOR-FILE.
* gnu/tests/nfs.scm ("nfs services are running"): Pass marionette to
WAIT-FOR-FILE.
2020-03-25 14:17:24 +01:00
Ricardo Wurmus b3c083b985
services/nfs: Mount nfsd pseudo file system.
* gnu/services/nfs.scm (nfs-shepherd-services): Add shepherd-service providing
/proc/fs/nfsd and make other shepherd services require it.
2020-03-25 14:17:24 +01:00
Guillaume Le Vaillant 620c756443
gnu: electron-cash: Update to 4.0.14.
* gnu/packages/finance.scm (electron-cash): Update to 4.0.14.
2020-03-25 11:09:45 +01:00
Ricardo Wurmus 2fcd2e1a5f
gnu: r-shiny: Add missing inputs.
* gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises,
r-rlang, and r-withr.
[native-inputs]: Add gfortran.
2020-03-25 09:40:05 +01:00
Ricardo Wurmus 51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs.
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
2020-03-25 09:40:05 +01:00
Jan Nieuwenhuizen fef7710937
gnu: bootstrap: Use fall-back mechanism for bootstrap-executables.
* gnu/packages/bootstrap.scm (%bootstrap-executable-base-urls): New variable.
Add lilypond.org url as a fall-back.
(bootstrap-executable-file-name): New function.
(bootstrap-executable): Use them to implement fall-back for donwloads of
bootstrap executables.
2020-03-24 23:31:34 +01:00
Jan Nieuwenhuizen 25bc0f34c6
gnu: bootstrap: gcc-static: Use gcc-5.
* gnu/packages/make-bootstrap.scm (gcc-static): Use gcc-5.  This fixes
building libstdc++-boot0 with a newly built %bootstrap-gcc.
(%gcc-stripped): Likewise.
(gcc-for-bootstrap): Likewise.
* gnu/packages/patches/gcc-5-hurd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5): Use it.
2020-03-24 23:31:34 +01:00
Jan Nieuwenhuizen eef44fea17
Revert "gnu: guile-static-stripped: Update to 2.2."
As discussed on IRC, keeping bootstrap Guile on 2.0 simplifies adding new
architectures and removes the need for parameterizing
gnu/packages/bootstrap.scm.

This reverts commit 2acfe022a7.

* gnu/packages/make-bootstrap.scm (%guile-static): Revert to guile-2.0.  Retain
build recipe.
* gnu/packages/patches/guile-relocatable.patch: Update for Guile 2.0.14.
2020-03-24 23:31:34 +01:00
Jan Nieuwenhuizen ee1cf1dd80
gnu: cross-libc: Build fix for the Hurd.
This fixes cross building of coreutils, e.g.

    ./pre-inst-env guix build --target=i586-pc-gnu coreutils

* gnu/packages/cross-base.scm (cross-libc): Add -lhurduser, -lmachuser for the
Hurd.
2020-03-24 23:31:34 +01:00
Jan Nieuwenhuizen 096a8e35e7
gnu: glibc: Add signal SA_SIGINFO support for the Hurd.
* gnu/packages/patches/glibc-hurd-signal-sa-siginfo.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc): Use it.
2020-03-24 23:31:34 +01:00
Jan Nieuwenhuizen 974c42a70a
gnu: glibc: Add clock patches for the Hurd.
* gnu/packages/patches/glibc-hurd-clock_t_centiseconds.patch: New file.
* gnu/packages/patches/glibc-hurd-clock_gettime_monotonic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update them.
* gnu/packages/base.scm (glibc): Use them.
2020-03-24 23:31:33 +01:00
Jan Nieuwenhuizen 9b943db357
gnu: hurd: Fix hurd-target?, add hurd-system?.
* gnu/packages/hurd.scm (hurd-target?): Bugfix; the arguments to
string-suffix? to test (%current-system) were transposed, always resulting
in #f.  Use hurd-triplet?.
(hurd-system?): New exported variable.
2020-03-24 23:31:33 +01:00
Jan Nieuwenhuizen 654de94e74
gnu: grub: Support for the Hurd.
* gnu/packages/virtualization.scm (qemu)[supported-systems]: Remove the Hurd.
* gnu/packages/linux.scm (mdadm)[supported-systems]: Likewise.
(lvm2)[supported-systems]: Likewise.
(fuse)[supported-systems]: Likewise.
* gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch:
New file
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bootloaders.scm (grub): Use it.
[inputs, native-inputs]: Remove non-supported dependencies on non-supported
systems.  Fixes build for the Hurd.
2020-03-24 23:31:29 +01:00
Tanguy Le Carrour 97b1366d49
gnu: poetry: Update to 1.0.5.
* gnu/packages/python-xyz.scm (poetry): Update to 1.0.5.
[propagated-inputs] Add python-clikit, python-importlib-metadata,
python-keyring, and python-pexpect. Remove python-msgpack and python-glob2.
[home-page] Update URL.
[arguments] Remove 'patch-setup-py' phase, and adjust required versions of
keyring, pyrsistent and importlib-metadata.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:16:50 -04:00
Tanguy Le Carrour c298118860
gnu: python-cachy: Update to 0.3.0.
* gnu/packages/python-xyz.scm (python-cachy): Update to 0.3.0.
[arguments]: Replace the 'check' phase.
[native-inputs]: Add memcached and python-pifpaf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
Tanguy Le Carrour f5879f158c
gnu: Add python-pifpaf.
* gnu/packages/python-xyz.scm (python-pifpaf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
Tanguy Le Carrour 20c9df4e46
gnu: Add python-daiquiri.
* gnu/packages/python-xyz.scm (python-daiquiri): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour 3b3edfa8e3
gnu: Add python-json-logger.
* gnu/packages/python-xyz.scm (python-json-logger): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour f6c784806e
gnu: Add python-xattr.
* gnu/packages/python-xyz.scm (python-xattr): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour 1655e7be78
gnu: python-fakeredis: Update to 1.2.1.
* gnu/packages/databases.scm (python-fakeredis): Update to 1.2.1.
[propagated-inputs]: Add python-sortedcontainers.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour eac978eef8
gnu: python-clikit: Update to 0.4.2.
* gnu/packages/python-xyz.scm (python-clikit): Update to 0.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 01e3044200
gnu: python-sortedcontainers: Add missing propagated-inputs.
* gnu/packages/python-xyz.scm (python-sortedcontainers):
[propagated-inputs] Add python-appdirs, python-distlib, python-filelock,
python-importlib-metadata and python-six.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 6dcbd20afa
gnu: python-cachecontrol: Add missing propagated-input.
* gnu/packages/python-web.scm (python-cachecontrol):
[propagated-inputs]: Add python-msgpack.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 66ab2f5e3a
gnu: python-msgpack: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.0.
(python-msgpack-transitional)[version,source]: New fields to avoid updating this
package.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 67c8b6448e
gnu: python-pastel: Update to 0.2.0.
* gnu/packages/graphics.scm (python-pastel): Update to 0.2.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Tanguy Le Carrour a356d1b68d
gnu: python-jsonschema: Update to 3.2.0.
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
[propagated-inputs]: Add python-importlib-metadata.
[arguments]: Use add-installed-pythonpath to make a test pass.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Tanguy Le Carrour 2c15cb5898
gnu: python-pexpect: Update to 4.8.0.
* gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0.
[arguments]: Disable failing test.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Paul Garlick 5e44011bfb
gnu: perl-mail-sendmail: Add line above definition.
* gnu/packages/perl.scm (perl-mail-sendmail): Add line.
2020-03-24 20:08:05 +00:00
Paul Garlick 25022bfd3a
gnu: Add perl-mail-sendmail.
* gnu/packages/perl.scm (perl-mail-sendmail): New variable.
2020-03-24 19:59:43 +00:00
Josh Marshall b14c234c0d
gnu: Add Docusign API Python client.
* gnu/packages/python-xyz.scm (python-docusign-esign): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 15:36:20 -04:00
Ludovic Courtès 72a5cc5358
gnu: automake: Add version 1.16.2.
* gnu/packages/autotools.scm (automake-1.16.2): New variable.
2020-03-24 18:03:18 +01:00
Marius Bakke eac54126fb
gnu: GHC: Enable RUNPATH validation.
* gnu/packages/haskell.scm (ghc-7, ghc-8.0, ghc-8.4)[arguments]: Remove
 #:validate-runpath?.
2020-03-24 18:02:44 +01:00
Marius Bakke f4e1833205
gnu: ghc@8.0: Remove obsolete patch.
* gnu/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/haskell.scm (ghc-8.0)[source](patches): Remove it.
2020-03-24 18:02:43 +01:00
Marius Bakke c75db69371
gnu: ghc: Really disable test that fails with glibc 2.30 and later.
This follows up commit 2e9c43aa9a, which was
incomplete.  Fixes <https://bugs.gnu.org/39358>.

* gnu/packages/patches/ghc-testsuite-dlopen-pie.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.  Also use tabs instead
of spaces on surrounding patches.
* gnu/packages/haskell.scm (ghc-8.6)[native-inputs]: Add patch for
"ghc-testsuite".
[arguments]: Remove incomplete workaround for the same issue.
2020-03-24 18:02:43 +01:00
Martin Becze b488b64a3e
gnu: Add guile3.0-semver.
* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
Efraim Flashner 08d5341b1f
gnu: nano: Update to 4.9.
* gnu/packages/nano.scm (nano): Update to 4.9.
2020-03-24 15:47:58 +02:00
Mathieu Othacehe 53de3e74fa
gnu: cross-gcc: Add a "lib" output.
Add a "lib" output to cross-gcc. This requires an upstream GCC patch adding
support for --with-toolexeclibdir configure option. This option allows to
install cross-built GCC libraries in a specific location.

This also fixes the computation of TOOLDIR_BASE_PREFIX, that fails when
/gnu/store/... directories are involved.

* gnu/packages/patches/gcc-7-cross-toolexeclibdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cross-base.scm (cross-gcc)[source]: Apply it,
[outputs]: add a "lib" output,
(cross-gcc-snippet): fix TOOLDIR_BASE_PREFIX.
2020-03-24 13:55:10 +01:00
Guillaume Le Vaillant 151f3d416c
gnu: Add qgis.
* gnu/packages/geo.scm (qgis): New variable.

Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2020-03-24 11:42:41 +01:00
Guillaume Le Vaillant f7ac2fe1ce
gnu: Add saga.
* gnu/packages/geo.scm (saga): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant 9fce591479
gnu: Add grass.
* gnu/packages/geo.scm (grass): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant efcb05083f
gnu: Add python-owslib.
* gnu/packages/python-xyz.scm (python-owslib): New variable.
2020-03-24 11:42:40 +01:00
Ricardo Wurmus b0d1da986b
gnu: r-harmony: Update to 0.1.
* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 8ff6386491
gnu: r-shiny: Update to 1.4.0.2.
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus c649d31957
gnu: r-tximport: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c10bef9bd3
gnu: r-caret: Update to 6.0-86.
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 1e40a27465
gnu: r-batchtools: Update to 0.9.13.
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 6005efa40f
gnu: r-mcmc: Update to 0.9-7.
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d3836473de
gnu: r-proc: Update to 1.16.2.
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 2f445f0da3
gnu: r-radiant-data: Update to 1.3.4.
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus ff248f41cb
gnu: r-patchwork: Update to 1.0.0.
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus f7a21df523
gnu: r-robustbase: Update to 0.93-6.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 7e349066e6
gnu: r-hmisc: Update to 4.4-0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1.
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d16a4d1f96
gnu: r-dt: Update to 0.13.
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus f871696911
gnu: r-locfit: Update to 1.5-9.2.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus e0d6a7da74
gnu: Add r-randomizr.
* gnu/packages/cran.scm (r-randomizr): New variable.
2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant 47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb.
* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
  option in the build phase.
2020-03-24 09:31:43 +01:00
Michael Rohleder 0f96fd6454
gnu: dialog: Update to 1.3-20200228.
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-23 21:17:55 -04:00
Leo Famulari aae5f89db0
gnu: Git: Update to 2.26.0.
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
2020-03-23 21:17:46 -04:00
Mathieu Othacehe acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input."
This reverts commit 4233e74b39.
2020-03-23 21:51:25 +01:00
Leo Famulari a11237e40a
gnu: Mutt: Update to 1.13.4.
* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
2020-03-23 15:53:11 -04:00
Alexandros Theodotou 0a6f68982b
gnu: sord: Add pcre to inputs.
* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
2020-03-23 20:48:49 +01:00
Marius Bakke 2e9c43aa9a
gnu: GHC: Disable test that fails with glibc 2.30 and later.
Fixes <https://bugs.gnu.org/39358>.

* gnu/packages/haskell.scm (ghc-8.6)[arguments]: Add substitution to disable
broken test.
2020-03-23 19:42:56 +01:00