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Author SHA1 Message Date
Nicolas Goaziou 5e44ec69d6
gnu: Add perl-text-haml. 
* gnu/packages/perl.scm (perl-text-haml): New variable.
 2020-06-14 12:19:43 +02:00
Nicolas Goaziou c158ab3067
gnu: Add perl-tie-simple. 
* gnu/packages/perl.scm (perl-tie-simple): New variable.
 2020-06-14 12:19:43 +02:00
Nicolas Goaziou f463868898
gnu: Add perl-data-section-simple. 
* gnu/packages/perl.scm (perl-data-section-simple): New variable.
 2020-06-14 12:19:43 +02:00
Nicolas Goaziou 6897699611
gnu: Add perl-test-subcalls. 
* gnu/packages/perl-check.scm (perl-test-subcalls): New variable.
 2020-06-14 12:19:42 +02:00
Nicolas Goaziou e72b40af3e
gnu: Add perl-test-object. 
* gnu/packages/perl-check.scm (perl-test-object): New variable.
 2020-06-14 12:19:42 +02:00
Nicolas Goaziou 25985c6957
gnu: Add perl-hook-lexwrap. 
* gnu/packages/perl.scm (perl-hook-lexwrap): New variable.
 2020-06-14 12:19:42 +02:00
Ivan Kozlov 8331e2357b
gnu: xl2tpd: Add pppd support. 
* gnu/packages/vpn.scm (xl2tpd)[inputs]: Add "linux-libre-headers" and "ppp",
[arguments]: add a 'setup-environment phase to set "PPPD" and "KERNELSRC"
variables.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-06-14 11:53:45 +02:00
Ricardo Wurmus d291b454bd
gnu: r-survival: Update to 3.2-3. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-3.
 2020-06-14 09:13:32 +02:00
Ricardo Wurmus cb935a0377
gnu: r-sf: Update to 0.9-4. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-4.
 2020-06-14 09:13:32 +02:00
Ricardo Wurmus b8ea08feb8
gnu: r-units: Update to 0.6-7. 
* gnu/packages/cran.scm (r-units): Update to 0.6-7.
 2020-06-14 09:13:32 +02:00
Ricardo Wurmus dfe1a36465
gnu: r-calibrate: Update to 1.7.6. 
* gnu/packages/cran.scm (r-calibrate): Update to 1.7.6.
 2020-06-14 09:13:32 +02:00
Ricardo Wurmus 214ee82742
gnu: r-flowworkspace: Update to 4.0.6. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.6.
 2020-06-14 09:13:22 +02:00
Kei Kebreau 13d962b9a6
gnu: starfighter: Update to 2.2. 
* gnu/packages/games.scm (starfighter): Update to 2.2.
 2020-06-13 18:54:58 -04:00
Tobias Geerinckx-Rice ae89d96c08
gnu: wesnoth: Update to 1.14.12. 
* gnu/packages/games.scm (wesnoth): Update to 1.14.12.
 2020-06-14 00:05:12 +02:00
Tobias Geerinckx-Rice b9587aa3c7
gnu: snd: Update to 20.4. 
* gnu/packages/audio.scm (snd): Update to 20.4.
 2020-06-14 00:05:12 +02:00
Tobias Geerinckx-Rice b97b8b44ca
gnu: progress: Fix cross-compilation. 
* gnu/packages/admin.scm (progress)[arguments]: Use CC-FOR-TARGET and a
target-specific pkg-config when cross-compiling.
 2020-06-14 00:05:12 +02:00
Tobias Geerinckx-Rice 4187e5401f
gnu: s6-portable-utils: Update to 2.2.2.4. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.4.
 2020-06-14 00:05:11 +02:00
Tobias Geerinckx-Rice 69300c0d70
gnu: gnome-boxes: Update to 3.36.5. 
* gnu/packages/gnome.scm (gnome-boxes): Update to 3.36.5.
 2020-06-14 00:05:11 +02:00
Tobias Geerinckx-Rice de08b5b23f
gnu: evince: Update to 3.36.5. 
* gnu/packages/gnome.scm (evince): Update to 3.36.5.
 2020-06-14 00:05:11 +02:00
Tobias Geerinckx-Rice a5d40ee7ac
gnu: python-shellingham: Update to 1.3.2. 
* gnu/packages/python-xyz.scm (python-shellingham): Update to 1.3.2.
[arguments]: Add ‘restore-setup.py’ phase.
 2020-06-14 00:05:11 +02:00
Tobias Geerinckx-Rice 238e2e457f
gnu: xapian: Update to 1.4.16. 
* gnu/packages/search.scm (xapian): Update to 1.4.16.
(python-xapian-bindings)[source]: Update content hash.
 2020-06-14 00:05:10 +02:00
Tobias Geerinckx-Rice 36384fd2f8
gnu: rclone: Update to 1.52.1. 
* gnu/packages/sync.scm (rclone): Update to 1.52.1.
 2020-06-14 00:05:10 +02:00
Tobias Geerinckx-Rice c668a8809a
gnu: cogl: Update to 1.22.8. 
* gnu/packages/gnome.scm (cogl): Update to 1.22.8.
 2020-06-14 00:05:10 +02:00
Tobias Geerinckx-Rice 483ce0d3c7
gnu: gimp: Update to 2.10.20. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.20.
 2020-06-14 00:05:10 +02:00
Tobias Geerinckx-Rice e76d190788
gnu: gegl: Update to 0.4.24. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.24.
 2020-06-14 00:05:10 +02:00
Tobias Geerinckx-Rice ee385c5837
gnu: babl: Update to 0.1.78. 
* gnu/packages/gimp.scm (babl): Update to 0.1.78.
 2020-06-14 00:05:09 +02:00
Tobias Geerinckx-Rice e51101ecda
gnu: libtextstyle: Update to 0.20.2. 
* gnu/packages/gettext.scm (libtextstyle): Update to 0.20.2.
 2020-06-14 00:05:09 +02:00
Tobias Geerinckx-Rice b4bfd66b9a
gnu: ltris: Update to 1.0.20. 
* gnu/packages/games.scm (ltris): Update to 1.0.20.
 2020-06-14 00:05:09 +02:00
Tobias Geerinckx-Rice d7822dc677
gnu: julius: Update to 1.4.1. 
* gnu/packages/games.scm (julius): Update to 1.4.1.
 2020-06-14 00:05:09 +02:00
Tobias Geerinckx-Rice d321d35aa9
gnu: angband: Use HTTPS. 
* gnu/packages/games.scm (angband)[source, home-page]: Use HTTPS.
 2020-06-14 00:05:09 +02:00
Tobias Geerinckx-Rice 4c9577443f
gnu: angband: Update to 4.2.1. 
* gnu/packages/games.scm (angband): Update to 4.2.1.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice fbbaf04d88
gnu: libolm: Update to 3.1.5. 
* gnu/packages/crypto.scm (libolm): Update to 3.1.5.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice 8c07da61e7
gnu: gnome-chess: Update to 3.36.1. 
* gnu/packages/games.scm (gnome-chess): Update to 3.36.1.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice 0c716128d3
gnu: gnome-chess: Don't use NAME in source URI. 
* gnu/packages/games.scm (gnome-chess)[source]: Hard-code NAME.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice ac6f1c777a
gnu: facter: Update to 4.0.26. 
* gnu/packages/admin.scm (facter): Update to 4.0.26.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice d22dc5f728
gnu: rust-tokio: Update to 0.2.21. 
* gnu/packages/crates-io.scm (rust-tokio): Update to 0.2.21.
 2020-06-14 00:05:07 +02:00
Tobias Geerinckx-Rice 33678aee91
gnu: rust-serde-bytes: Fix typo in synopsis. 
* gnu/packages/crates-io.scm (rust-serde-bytes)[synopsis]: Remove ‘of’.
 2020-06-14 00:05:07 +02:00
Tobias Geerinckx-Rice 449bac5b4d
gnu: rust-serde-bytes: Update to 0.11.5. 
* gnu/packages/crates-io.scm (rust-serde-bytes): Update to 0.11.5.
 2020-06-14 00:05:07 +02:00
Ricardo Wurmus ea7882b2e3
gnu: alsa-modular-synth: Hide default GCC. 
* gnu/packages/audio.scm (alsa-modular-synth)[native-inputs]: Distinguish
GCC-5.
[arguments]: Add build phase "hide-default-gcc".
 2020-06-13 23:50:02 +02:00
Ricardo Wurmus 401e6ccb12
gnu: alsa-modular-synth: Add patch to fix vocoder build error. 
* gnu/packages/patches/alsa-modular-synth-fix-vocoder.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (alsa-modular-synth)[source]: Add it.
 2020-06-13 23:50:01 +02:00
Marius Bakke 29961439aa
gnu: check@0.12: Do not inherit replacements from check. 
* gnu/packages/check.scm (check-0.12): Use INHERIT instead of PACKAGE/INHERIT.
 2020-06-13 23:29:22 +02:00
Marius Bakke cce6b76416
gnu: libnet: Update home page. 
* gnu/packages/networking.scm (libnet)[home-page]: Adjust to current, as
referred to from the previous.
 2020-06-13 23:29:22 +02:00
Marius Bakke 41cb238281
gnu: libnet: Update to 1.2. 
* gnu/packages/networking.scm (libnet): Update to 1.2.
[source]: Switch to URL-FETCH.
[arguments]: Remove chdir phase.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.  Add PERL.
 2020-06-13 23:29:21 +02:00
Marius Bakke dd61cd85f1
gnu: jucipp: Build with Clang 10. 
* gnu/packages/text-editors.scm (jucipp)[inputs]: Change from CLANG to CLANG-10.
 2020-06-13 23:29:21 +02:00
Marius Bakke 4723766b93
gnu: ghc-regex-pcre-builtin: Update home page. 
* gnu/packages/haskell-xyz.scm (ghc-regex-pcre-builtin)[home-page]: Set to the
correct home page, not the alternative 'ghc-regex-pcre' library.
 2020-06-13 23:29:21 +02:00
Marius Bakke 1a6d0d8c2d
gnu: perl-net-dns-resolver-programmable: Remove "v" prefix from version string. 
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable)[version]:
Remove "v" prefix.
[source](uri): Adjust accordingly.
 2020-06-13 23:29:21 +02:00
Marius Bakke 8ab70bae52
Merge branch 'staging' 2020-06-13 22:52:25 +02:00
Ricardo Wurmus 9bc516bada
gnu: Add r-pcatools. 
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
 2020-06-13 22:35:29 +02:00
Ricardo Wurmus e8521f0b95
gnu: libnode: Delete unused phase. 
This is a follow-up to commit bb310a1976.

* gnu/packages/node.scm (libnode)[arguments]: Delete phase
"patch-npm-shebang".
 2020-06-13 20:04:51 +02:00
Ekaitz Zarraga 2c74e87079
gnu: Add meshlab. 
* gnu/packages/engineering.scm (meshlab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-13 19:16:14 +02:00
Ludovic Courtès ff30860b63
gnu: perf: Set 'CC'. 
* gnu/packages/linux.scm (perf)[arguments]: Add "CC=gcc" to #:make-flags.
This fixes a (harmless?) error message during the 'configure' phase.
 2020-06-13 19:16:14 +02:00
Ludovic Courtès 221a104248
gnu: perf: Restore use of dependencies. 
* gnu/packages/linux.scm (perf)[arguments]: Remove C_INCLUDE_PATH from
 #:make-flags.  It is no longer needed since the switch to C_INCLUDE_PATH
in 2073b55e6b and would prevent
dependencies from being found.
 2020-06-13 19:16:14 +02:00
Danny Milosavljevic 1eec6b0c01
gnu: guile-sqlite3: Update to 0.1.2. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.2.
 2020-06-13 17:16:03 +02:00
Ricardo Wurmus 2f38e38fb5
Revert "gnu: node: Build shared library." 
This reverts commit f9311eaa7c.
Adding "--shared" replaces the executable with the shared library, breaking
all users of the nodejs executable.
 2020-06-13 17:02:26 +02:00
Ricardo Wurmus e602e7f271
gnu: r-v8: Use libnode instead of node. 
* gnu/packages/cran.scm (r-v8)[inputs]: Replace node with libnode.
 2020-06-13 17:02:26 +02:00
Ricardo Wurmus bb310a1976
gnu: Add libnode. 
* gnu/packages/node.scm (libnode): New variable.
 2020-06-13 17:02:26 +02:00
Mathieu Othacehe 4a04d49c2e
image: Remove 'maybe-with-target'. 
* gnu/system/image.scm (maybe-with-target): Remove,
(system-image): adapt accordingly.
 2020-06-13 16:58:57 +02:00
Mathieu Othacehe 478d1270ce
install: final: Add some logging. 
* gnu/installer/final.scm (umount-cow-store): Add some logging.
 2020-06-13 15:21:20 +02:00
Mathieu Othacehe f292d4719d
image: Add 'target' support. 
* gnu/image.scm (<image>)[target]: New field,
(image-target): new public method.
* gnu/system/image.scm (hurd-disk-image): Set "i586-pc-gnu" as image 'target'
field,
(maybe-with-target): new procedure,
(system-image): honor image 'target' field using the above procedure.
 2020-06-13 15:20:52 +02:00
Jan (janneke) Nieuwenhuizen 7ca533c723
image: Make 'find-image' non-monadic. 
* gnu/system/image.scm (find-image): Make non-monadic.  Add 'target'
parameter.
* gnu/tests/install.scm (run-install): Update caller,
passing (%current-target-system).
* guix/scripts/system.scm (perform-action): Likewise.
 2020-06-13 15:03:55 +02:00
Christopher Baines 3857aba7ab
gnome: gnome-desktop: Add bubblewrap as an input. 
This is expected to be available, oddly as libseccomp is available.  These
changes fix thumbnails for Nautilus.

* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Add 'patch-bubblewrap
phase.
[inputs]: Add bubblewrap.
 2020-06-13 12:02:13 +01:00
Michael Rohleder e51175f686
gnu: emacs-debbugs: Update to 0.23. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.23.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-06-13 17:19:21 +08:00
Jan (janneke) Nieuwenhuizen 7304cb0a23
services: hurd: Remove deprecated 'hurd-getty-service' wrapper. 
* gnu/services/hurd.scm (hurd-getty-service): Remove.
 2020-06-13 10:04:51 +02:00
Jan (janneke) Nieuwenhuizen 60fdd9e389
system: hurd: Remove 'cross-hurd-image' hack. 
The initial

    guix build -f gnu/system/hurd.scm

hack has been superseded by regular guix system (cross) build.

* gnu/system/hurd.scm (compile-manifest, cross-hurd-image): Remove.
 2020-06-13 09:11:47 +02:00
Jan (janneke) Nieuwenhuizen edbc067138
system: bare-hurd.tmpl: Add openssh-sans-x client and service. 
* gnu/system/examples/bare-hurd.tmpl (%hurd-os)[packages]: Add openssh-sans-x.
[services]: Add openssh-service.  Add example usage.
 2020-06-13 09:11:47 +02:00
Ricardo Wurmus 9ae4bd0b77
gnu: r-mzr: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 6b9e3b92c4
gnu: r-biodist: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 6a88291d1a
gnu: r-biocworkflowtools: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 723fa00d11
gnu: r-biocset: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 1759a13d6e
gnu: r-biocpkgtools: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 132abe5fcc
gnu: r-biocor: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 1c51821593
gnu: r-bioconcotk: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 4091eae2bc
gnu: r-multiassayexperiment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus b56a3462ad
gnu: r-experimenthub: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 543c63f2ae
gnu: r-biocgraph: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 8b71b14158
gnu: r-bioccasestudies: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus a74a427bd8
gnu: r-ebarrays: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus affb4ab351
gnu: r-reactomepa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 29b1702799
gnu: r-graphite: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus e09ca033f4
gnu: r-biobroom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 06908a73fc
gnu: r-chemminer: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus d0badcc180
gnu: r-bigpint: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus f31edb0191
gnu: r-biggr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 3116998610
gnu: r-hyperdraw: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 0ff724616b
gnu: r-hypergraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a54fd40994
gnu: r-bifet: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 7642517336
gnu: r-bicare: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 2415576ecb
gnu: r-bhc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus de91f15a74
gnu: r-bgx: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 296992be08
gnu: r-bgmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a9148d0686
gnu: r-unifiedwmwqpcr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 518050a75b
gnu: r-htqpcr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus fbbaf5ae64
gnu: r-variancepartition: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 41f7fe4aa9
gnu: r-variantfiltering: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 49dd504192
gnu: r-timeseriesexperiment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 12b255f213
gnu: r-wavcluster: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus efb44ebca4
gnu: r-reqon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 83b7625cae
gnu: r-seqbias: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 8112796db1
gnu: r-bigmelon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 939ace9624
gnu: r-watermelon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus cad8a5099a
gnu: r-roc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus b32808831c
gnu: r-genie3: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus e677c9b501
gnu: r-cicero: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 93235b1eb3
gnu: r-rcistarget: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus af66e35d31
gnu: r-depecher: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 7bec32fe53
gnu: r-mixomics: Update to 6.12.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 32bd0295c8
gnu: r-flowsom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8f5e16742d
gnu: r-opencyto: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 372caae6a9
gnu: r-flowstats: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus a9af09df17
gnu: r-flowworkspace: Update to 4.0.3. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus b347d6c32b
gnu: r-flowclust: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 062789b87a
gnu: r-flowviz: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 3407dfa61f
gnu: r-ggcyto: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 631b12ca71
gnu: r-ncdfflow: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 76b163d616
gnu: r-flowmeans: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus faff2de0da
gnu: r-flowcore: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 6954950f4a
gnu: r-flowutils: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5d63f69be9
gnu: r-rsubread: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5ca991bff9
gnu: r-annotatr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 8b6f26e634
gnu: r-biosigner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 77334168cf
gnu: r-ropls: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 905bbb13da
gnu: r-multidataset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus cb941ca06d
gnu: r-birta: Update to 1.31.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus f50609aba5
gnu: r-birewire: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 1c5360ac3d
gnu: r-rqc: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus a84abf434d
gnu: r-quasr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 2aff2724ef
gnu: r-rhisat2: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 201902bc05
gnu: r-sgseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 568c3929b6
gnu: r-rbowtie: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 173844fc75
gnu: r-biocfilecache: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8e5933a8e4
gnu: r-progeny: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 1ec10e1987
gnu: r-roar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus a37a6ffb2d
gnu: r-yarn: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 70d90ae76d
gnu: r-quantro: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus f0439a1767
gnu: r-gcrma: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 8a5abc62d5
gnu: r-yapsa: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus a471def062
gnu: r-gtrellis: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6e397aad32
gnu: r-yamss: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e059ab2503
gnu: r-aucell: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6314938884
gnu: r-allelicimbalance: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 231898d5b9
gnu: r-annotationtools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 7866994c03
gnu: r-annotationfuncs: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 19b39ac579
gnu: r-gofuncr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus a007de81e5
gnu: r-atacseqqc: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 785c759617
gnu: r-genomicscores: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e65783e032
gnu: r-motifbreakr: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus da6a75fe00
gnu: r-motifdb: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 352cfa3434
gnu: r-motiv: Update to 1.43.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6d02e17139
gnu: r-rgadem: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 7450edca0d
gnu: r-bacon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 35bcfaefae
gnu: r-abseqr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus b391b1e47c
gnu: r-a4: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 2a91c987fd
gnu: r-a4base: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6afea4ea93
gnu: r-a4preproc: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 33c9c8563d
gnu: r-a4classif: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 4f2112add9
gnu: r-a4core: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus d200b4dc48
gnu: r-annaffy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 500f7df840
gnu: r-mlinterfaces: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 43fb14cedc
gnu: r-enrichplot: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 3a80f1cfae
gnu: r-dose: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1dec455cb8
gnu: r-fgsea: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 8d30d59adf
gnu: r-anota: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 621cd90406
gnu: r-gosemsim: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 65e0a7b181
gnu: r-heatplus: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.34.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus f2b686f61a
gnu: r-varianttools: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.30.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ecb4e16519
gnu: r-triform: Update to 1.29.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.29.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 293fb8a147
gnu: r-ioniser: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1465873c6c
gnu: r-linnorm: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ae1c51a1c1
gnu: r-lumi: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.40.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 5f25d5f80d
gnu: r-methylumi: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 83e6ffdac1
gnu: r-minfi: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus e3fbcb28a4
gnu: r-bumphunter: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus debaa0f3ba
gnu: r-siggenes: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.62.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d784a4784f
gnu: r-illuminaio: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 159e427c9f
gnu: r-geoquery: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.56.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 3fc1e03949
gnu: r-scone: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ce9e19bc9b
gnu: r-scdd: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 22c084ba9d
gnu: r-noiseq: Update to 2.31.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.31.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d1f3c37134
gnu: r-monocle: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 97cba97aa1
gnu: r-mast: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.14.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ee1e8fee89
gnu: r-icobra: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 359a084aa3
gnu: r-ihw: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 0653b8b082
gnu: r-lpsymphony: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.16.0.
[inputs]: Remove gfortran.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 6e2dc9e385
gnu: r-karyoploter: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 1e37caca52
gnu: r-ebseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 6a7cfd5f1f
gnu: r-dnacopy: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.62.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 866939b76d
gnu: r-copynumber: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 9697afb10e
gnu: r-chipexoqual: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 784d1670b7
gnu: r-savr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.26.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 265b645075
gnu: r-destiny: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.2.0.
[propagated-inputs]: Add r-nbconvertr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus a8351d467c
gnu: r-biocsingular: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus f5864c11a4
gnu: r-biocneighbors: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ae0fcaa6fd
gnu: r-ruvseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 14f40ae830
gnu: r-dnabarcodes: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 437bc4dda9
gnu: r-inspect: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.18.0.
[propagated-inputs]: Add r-rtracklayer.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 46a973bc24
gnu: r-plgem: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.60.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ee73dea61b
gnu: r-rots: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.16.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus a6251d6e8b
gnu: r-glimma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7fbd97745b
gnu: r-goseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.40.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus c7be592fb4
gnu: r-ctc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.62.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 76dd036e16
gnu: r-genomicinteractions: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 861a903f14
gnu: r-interactionset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 6b78a91b75
gnu: r-riboseqr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7aae05a953
gnu: r-riboprofiling: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus ef1d3231c3
gnu: r-chipcomp: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.18.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 9834c36724
gnu: r-bayseq: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus f4ef564595
gnu: r-qdnaseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.24.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus de4a352e8a
gnu: r-cghcall: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.50.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus bd93ec4cf0
gnu: r-cghbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.48.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 49d589e530
gnu: r-marray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.66.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus dc24de46ad
gnu: r-chippeakanno: Update to 3.22.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7d37c6d914
gnu: r-graph: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 8cadf253c3
gnu: r-multtest: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.44.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b47b649ae5
gnu: r-diffbind: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus f9a247590e
gnu: r-qvalue: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus ace82f805f
gnu: r-oligo: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b628842f7e
gnu: r-oligoclasses: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 53e4201937
gnu: r-geneplotter: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f94cf0184
gnu: r-reportingtools: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f34dd58e9
gnu: r-regioner: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 07bea01092
gnu: r-hpar: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus c2f4ad96f5
gnu: r-annotate: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus acaf8a2342
gnu: r-affxparser: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus fa61069781
gnu: r-affycoretools: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 36d4ca410d
gnu: r-affycontam: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 251c18f1ed
gnu: r-affycompatible: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 66aeb1b46d
gnu: r-affycomp: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus bc217e4c0c
gnu: r-biocversion: Update to 3.11.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 1ab0380db9
gnu: r-cummerbund: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 751fa8ff71
gnu: r-coverageview: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 725eea00da
gnu: r-ideoviz: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus a3b55161c7
gnu: r-delayedmatrixstats: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 47c7670c43
gnu: r-scran: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0.
[propagated-inputs]: Add r-iranges.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 7039b53945
gnu: r-scater: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.1.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 9e7acf2f14
gnu: r-singlecellexperiment: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.10.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 16dd6bacaa
gnu: r-beachmat: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 87d5444d9f
gnu: r-rhdf5lib: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0.
[source]: Update snippet.
[arguments]: Replace ZLIB variables in Makevars.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus cf907680e8
gnu: r-hdf5array: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 46f188d1df
gnu: r-hitc: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.32.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 6be25cc2db
gnu: r-fithic: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus a811751f49
gnu: r-sushi: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.26.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus ddef43a29d
gnu: r-gwascat: Update to 2.20.1. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.20.1.
[propagated-inputs]: Remove r-homo-sapiens; add r-ggplot2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 522da60b29
gnu: r-gviz: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.32.0.
[propagated-inputs]: Add r-ensembldb.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus a97897bc3d
gnu: r-gqtlstats: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 6caad43c18
gnu: r-ldblock: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 87772ab4dd
gnu: r-erma: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus aab0e28fc1
gnu: r-snpstats: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.38.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 42d8cd9f97
gnu: r-gqtlbase: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7038aeb210
gnu: r-ggbio: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 07518c3a34
gnu: r-biovizbase: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.36.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7c26687871
gnu: r-organismdbi: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.30.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 39da6fbc40
gnu: r-ensembldb: Update to 2.12.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.12.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7a9e7e4844
gnu: r-dirichletmultinomial: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.30.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus ca5c92c0c7
gnu: r-complexheatmap: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 8323ff3376
gnu: r-genomicfiles: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.24.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 817e4c8b68
gnu: r-gage: Update to 2.37.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.37.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus d80a6cacaf
gnu: r-keggrest: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 3422533bd9
gnu: r-fastseg: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.34.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 5fce232977
gnu: r-annotationhub: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 334e8d7b79
gnu: r-interactivedisplaybase: Update to 1.26.3. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.26.3.
[propagated-inputs]: Add r-dt.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 15990617eb
gnu: r-edaseq: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus c9059a3b0e
gnu: r-deseq: Update to 1.39.0. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.39.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 019bc36732
gnu: r-aroma-light: Update to 3.18.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.18.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus f6ddf20891
gnu: r-msnid: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.22.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 10a7ee2609
gnu: r-msnbase: Update to 2.14.2. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.14.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 7b4fc6ae0a
gnu: r-pcamethods: Update to 1.80.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.80.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 8eb579883d
gnu: r-mzid: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 8e0d11d88b
gnu: r-vsn: Update to 3.56.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.56.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 736f6cfe66
gnu: r-affy: Update to 1.66.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.66.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus d93af7d632
gnu: r-affyio: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.58.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 157eb89707
gnu: r-protgenerics: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.20.0.
 2020-06-13 01:19:43 +02:00