e069c6df5e
gnu: Add r-dada2.
...
* gnu/packages/bioconductor.scm (r-dada2): New variable.
2022-10-06 12:38:34 +02:00
17134b9ec1
gnu: r-tximeta: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03 19:08:09 +02:00
94693d1980
gnu: r-bionero: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03 19:08:09 +02:00
202fd44ca0
gnu: r-biodb: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03 19:08:09 +02:00
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
6bf59194a6
gnu: r-basilisk: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2.
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* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03 19:08:09 +02:00
869b1f9f5c
gnu: r-pathview: Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03 19:08:09 +02:00
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03 19:08:08 +02:00
cc719399c9
gnu: r-scran: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1527d2e9df
gnu: r-scuttle: Update to 1.6.3.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03 19:08:08 +02:00
d66a466909
gnu: r-hdf5array: Update to 1.24.2.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03 19:08:08 +02:00
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03 19:08:08 +02:00
9af834ad37
gnu: r-biocviews: Update to 1.64.1.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03 19:08:08 +02:00
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03 19:08:08 +02:00
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03 19:08:08 +02:00
10c006c21d
gnu: r-opencyto: Update to 2.8.4.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03 19:08:08 +02:00
bceed10243
gnu: r-flowstats: Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03 19:08:08 +02:00
eed76ad91a
gnu: r-flowviz: Update to 1.60.2.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03 19:08:08 +02:00
f82d20caae
gnu: r-ggcyto: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03 19:08:08 +02:00
23e42e77d4
gnu: r-rsubread: Update to 2.10.5.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03 19:08:07 +02:00
597106f234
gnu: r-rgadem: Update to 2.44.1.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03 19:08:07 +02:00
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03 19:08:07 +02:00
842431a036
gnu: r-dose: Update to 3.22.1.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03 19:08:07 +02:00
2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1.
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* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03 19:08:07 +02:00
1cb30ba714
gnu: r-ggtree: Update to 3.4.4.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03 19:08:07 +02:00
a047448aad
gnu: r-treeio: Update to 1.20.2.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03 19:08:07 +02:00
41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03 19:08:07 +02:00
e581479be8
gnu: r-diffbind: Update to 3.6.4.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03 19:08:07 +02:00
309cfcedca
gnu: r-zellkonverter: Update to 1.6.5.
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* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03 19:08:07 +02:00
039d894b9d
gnu: r-limma: Update to 3.52.4.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03 19:08:07 +02:00
a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03 19:08:06 +02:00
a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03 19:08:06 +02:00
ba6a3e7d39
gnu: r-gage: Update to 2.46.1.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03 19:08:06 +02:00
c82320aa21
gnu: r-complexheatmap: Update to 2.12.1.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03 19:08:06 +02:00
038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
2022-10-03 19:08:06 +02:00
15243c2f84
gnu: r-biostrings: Update to 2.64.1.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03 19:08:06 +02:00
29a947216c
gnu: r-annotationforge: Update to 1.38.1.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03 19:08:06 +02:00
96b560ac8b
gnu: r-dearseq: Update to 1.8.4.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-10-03 19:08:03 +02:00
93328f8b89
gnu: r-activedriverwgs: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
2022-09-20 17:02:09 +02:00
8f3787576c
gnu: r-htscluster: Update to 2.0.10.
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* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
2022-09-20 17:02:09 +02:00
b1dd1f221f
gnu: r-perfmeas: Update to 1.2.5.
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* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
2022-09-20 17:02:09 +02:00
9c91113ee7
gnu: r-valr: Update to 0.6.5.
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* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
2022-09-20 17:02:09 +02:00
47fb9d23ea
gnu: Add r-omicade4.
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* gnu/packages/bioconductor.scm (r-omicade4): New variable.
2022-09-15 15:22:11 +02:00
d3f3968e65
gnu: Add r-made4.
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* gnu/packages/bioconductor.scm (r-made4): New variable.
2022-09-15 15:22:11 +02:00
ad1d3f98b1
gnu: Add comments to the bottom of a few package modules.
...
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.
If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.
* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
2022-09-10 10:45:27 +01:00
9fa3e90789
gnu: r-edger: Update to 3.38.4.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.4.
[propagated-inputs]: Remove r-statmod.
2022-09-06 08:42:20 +03:00
9626ca8126
gnu: r-genomicalignments: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.1.
2022-09-05 22:58:12 +03:00
3bf7bdccee
gnu: Add r-milor.
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* gnu/packages/bioconductor.scm (r-milor): New variable.
2022-08-31 23:06:45 +02:00
Ricardo Wurmus
Christopher Baines
Efraim Flashner