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2155 Commits (b8d52fe2771220742bf7e55700d0a91e05d8536c)

Author SHA1 Message Date
Ludovic Courtès 94fea21b21
gnu: hdf5@1.10: Update to 1.10.5.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13 18:04:04 +01:00
Tobias Geerinckx-Rice 79a3925355
gnu: libnftnl: Update to 1.1.5.
* gnu/packages/linux.scm (libnftnl): Update to 1.1.5.
[source]: Add patch.
* gnu/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-12-12 03:02:31 +01:00
Mark H Weaver 04b33ce205
gnu: nss: Fix CVE-2019-11745 via graft.
* gnu/packages/patches/nss-CVE-2019-11745.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable.
(nss)[replacement]: Add field.
2019-12-11 01:52:10 -05:00
Ludovic Courtès 4bd6f1d1d6
gnu: guile: Add 2.2.6-1 with a finalization crash bug-fix.
* gnu/packages/patches/guile-finalization-crash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.2/bug-fix): New variable.
2019-12-09 18:32:05 +01:00
Guillaume Le Vaillant 4427417bd7
gnu: websocketpp: Add patch for Boost >= 1.70.
* gnu/packages/patches/websocket-fix-for-boost-1.70.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (websocketpp): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-09 18:32:04 +01:00
Evan Straw 9beec2173f
gnu: stumpwm: Remove obsolete patch.
* gnu/local.mk (stumpwm-fix-broken-read-one-line.patch): Remove obsolete.

Co-authored-by: Brett Gilio <brettg@posteo.net>
Signed-off-by: Brett Gilio <brettg@posteo.net>
2019-12-08 21:26:21 -06:00
Björn Höfling 7fa83fa860
gnu: ruby-safe-yaml: Update to 1.0.5.
* gnu/packages/ruby.scm(ruby-save-yaml): Update to 1.0.5.
* gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-09 00:35:42 +01:00
Andrew Miloradovsky 327bfe8db9
gnu: glusterfs: Update to 7.0
* gnu/packages/file-systems.scm (glusterfs): Update to 7.0.
[source]: Update URL.
[arguments]: Add "PYTHON=" and"--enable-cmocka" configure flags.
Remove 'replace-config.sub and 'fix-lex phases.  Add 'autogen.
[native-inputs]: Add libtirpc, rpcsvc-proto, autoconf, automake, and
libtool.
[inputs]: Add fuse, libaio, and rdma-core.  Remove lvm2 and sqlite.
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch:
Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-08 00:47:26 +01:00
Kei Kebreau 05b29d8494
gnu: python-pyatspi: Update to 2.32.1.
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.32.1.
[source]: Remove patch.
* gnu/packages/patches/python-pyatspi-python-37.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-07 14:04:13 -05:00
Kei Kebreau 995ef5ea11
gnu: totem: Update to 3.32.1.
* gnu/packages/gnome.scm (totem): Update to 3.32.1.
[source]: Remove patches.
[arguments]: Add 'pre-check' phase.  Remove #:parallel-build?.
[native-inputs]: Add python-pylint and xorg-server-for-tests.
[inputs]: Replace python2-pygobject with python-pygobject.
* gnu/packages/patches/totem-meson-easy-codec.patch,
gnu/packages/patches/totem-meson-compat.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-12-07 14:04:11 -05:00
Kei Kebreau a6938bac22
gnu: gnome-control-center: Update to 3.32.2.
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.32.2.
[source]: Remove patch.
[arguments]: Adjust 'patch-paths' phase accordingly.
[native-inputs]: Add hicolor-icon-theme, python-dbusmock and
xorg-server-for-tests.
[inputs]: Add gnome-session and gsound.
* gnu/packages/patches/gnome-control-center-udisks.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2019-12-07 14:04:10 -05:00
Jan Nieuwenhuizen 8c0dcf3e89
gnu: mes: Add patch to remove store name from binary.
* gnu/packages/patches/mes-remove-store-name.patch: New file, from upstream.
* gnu/packages/mes.scm (mes): Use it.  Add `www.' to homepage.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-12-07 19:30:04 +01:00
Jan Nieuwenhuizen 9720104c43
gnu: Add ncompress.
* gnu/packages/compression.scm (ncompress): New variable.
* gnu/packages/patches/compress-fix-softlinks.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-12-06 06:52:36 +01:00
Pierre Neidhardt 88f06fd015
gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
2019-12-05 16:23:06 +01:00
Tobias Geerinckx-Rice d9544d91a6
Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm."
This reverts commit ac1ee30f4f, which
still breaks ‘guix pull’.
2019-12-05 15:38:52 +01:00
Pierre Neidhardt ac1ee30f4f
gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
2019-12-05 13:48:47 +01:00
Marius Bakke 0fa9f29a51
gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image.scm (libjpeg-turbo/fixed): New variable.
(libjpeg-turbo)[replacement]: New field.
2019-12-04 23:18:24 +01:00
Marius Bakke 63e8df382f
gnu: feh: Update to 3.3.
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image-viewers.scm (feh): Update to 3.3.
[source](patches): Remove.
2019-12-04 21:26:50 +01:00
Marius Bakke 33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Mark H Weaver 34369f3103
gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008,
CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012.

* gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update hash for the firefox source tarball.  Update to the
latest from gnuzilla.git.  Don't apply icecat-gnuzilla-fixes.patch.  Remove
determinism fix in makeicecat that is now upstream.  Tweak a status message.
(icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt.
2019-12-04 06:36:45 -05:00
Eric Bavier dc3e62a494
gnu: handbrake: Upgrade to 1.3.0.
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0.  Remove
patch.
[native-inputs]: Remove cmake and curl.
[inputs]: Add dav1d and numactl.
[arguments]: Add "--disable-nvenc" to configure flags in place of patch.
Adjust "bootstrap" phase in response to upstream changes.
Add "patch-SHELL" and "relax-reqs" phases.
2019-12-03 22:20:22 -06:00
Tobias Geerinckx-Rice bc134c77e0
gnu: pugixml: Update to 1.10.
* gnu/packages/xml.scm (pugixml): Update to 1.10.
[source]: Remove obsolete patch.
* gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-03 01:52:44 +01:00
Ricardo Wurmus ca7c365312
gnu: python-scikit-image: Move to (gnu packages python-science).
* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image):
Move these two from here...
* gnu/packages/python-science.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-12-02 15:25:12 +01:00
Tobias Geerinckx-Rice 4d441ca174
gnu: thermald: Update to 1.9.
* gnu/packages/admin.scm (thermald): Update to 1.9.
[source]: Remove patch.
* packages/patches/thermald-make-int-max32-visible.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-01 03:14:01 +01:00
Tobias Geerinckx-Rice c7164ad65f
gnu: fcgi: Update to 2.4.2.
* gnu/packages/web.scm (fcgi): Update to 2.4.2.
[source]: Use GIT-FETCH and GIT-FILE-NAME.  Remove obsolete patches.
[native-inputs]: Add autoconf, automake, and libtool.
* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch,
gnu/packages/patches/fcgi-2.4.0-poll.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2019-12-01 00:49:15 +01:00
Tobias Geerinckx-Rice 775497549c
gnu: retroarch: Disable the on-line updater.
Addresses <http://issues.guix.gnu.org/issue/38360>.

* gnu/packages/emulators.scm (retroarch)[source]: Add patch and snippet.
* packages/patches/retroarch-disable-online-updater.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-30 22:14:09 +01:00
Julien Lepiller 05fe0a587a
gnu: ocaml-piqilib: Update to 0.6.15.
* gnu/packages/ocaml.scm (ocaml-piqilib): Update to 0.6.15.
[source]: Remove patch.
[native-inputs]: Remove camlp4.
[propagated-inputs]: Replace ulex with sedlex.
* gnu/packages/patches/ocaml-piqilib-Update-base64.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-30 15:50:30 +01:00
Ludovic Courtès 68ac34e120
gnu: openmpi: Increase priority of the PSM component.
* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to...
* gnu/packages/patches/openmpi-mtl-priorities.patch: ... this.  Add hunk
to change the priority of PSM.
* gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-29 15:54:19 +01:00
Tobias Geerinckx-Rice e00d5b6bbf
gnu: xinetd: Update to 2.3.15.4 [fix build].
* gnu/packages/web.scm (xinetd): Update to 2.3.15.4.
[source]: Switch to openSUSE (and Debian) maintenance fork.
Remove obsolete patches.
[native-inputs]: Add automake, autoconf, libtool, and pkg-config.
[home-page]: Update.
* gnu/packages/patches/xinetd-CVE-2013-4342.patch,
gnu/packages/patches/xinetd-fix-fd-leak.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2019-11-29 06:08:18 +01:00
Ricardo Wurmus 076527c354
Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm."
This reverts commit abf43a67d5 as it broke "guix pull".
2019-11-28 21:09:24 +01:00
Pierre Neidhardt abf43a67d5
gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
2019-11-28 19:36:12 +01:00
Ludovic Courtès d8f8adfebf
gnu: psm: Disable memory statistics code.
* gnu/packages/patches/psm-disable-memory-stats.patch: New file.
* gnu/packages/linux.scm (psm)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-28 18:43:54 +01:00
Marius Bakke 34f849a945
Merge branch 'master' into staging 2019-11-28 16:47:01 +01:00
Guillaume Le Vaillant c1c6650e28
services: Add pam-mount.
* gnu/services/pam-mount.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (PAM Mount Service): New subsection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-28 13:30:53 +01:00
Marius Bakke 0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Pierre Langlois 9943d238e9
gnu: feh: Adapt tests for imlib2 1.6.
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file.
* gnu/packages/image-viewers.scm (feh)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-28 00:33:49 +01:00
Guillaume Le Vaillant cd2ce8abae
gnu: Add pam-mount.
* gnu/packages/admin.scm (pam-mount): New variable.
* gnu/packages/patches/pam-mount-luks2-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-26 00:16:54 +01:00
Tobias Geerinckx-Rice 99b106022c
gnu: xsane: Fix snprintf buffer length.
* gnu/packages/scanner.scm (xsane)[source]: Add patch.
* gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-22 22:16:32 +01:00
Tobias Geerinckx-Rice 61abb11481
gnu: Register xsane patches.
This follows up on commit a608666d74.

* gnu/local.mk (dist_patch_DATA): Add missing patches.
2019-11-22 22:15:38 +01:00
Ludovic Courtès cf87919657
gnu: libseccomp: Fix build on AArch64.
This is a followup to d100d5d544.

* gnu/packages/patches/libseccomp-open-aarch64.patch: New file.
* gnu/packages/linux.scm (libseccomp)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-22 15:13:25 +01:00
Marius Bakke b60d2bfff9
Merge branch 'master' into staging 2019-11-21 22:44:15 +01:00
Julien Lepiller 8da527d5bc
gnu: hexchat: Fix crash on exit.
* gnu/packages/patches/hexchat-crash-exit.patch: New file.
* gnu/packages/hexchat.scm (orgin): Add patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-21 22:28:04 +01:00
Timothy Sample 1b84d8ef34
gnu: ghc-haddock-api: Update to 2.22.0.
* gnu/packages/patches/ghc-haddock-api-fix-haddock.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-haddock-api): Update to 2.22.0.
[source]: Use the new patch.
[arguments]: Change the 'update-constraints' phase to allow newer
versions of 'QuickCheck' and 'hspec'.
2019-11-20 20:48:55 -05:00
Timothy Sample eef308d62a
gnu: elm-compiler: Fix Cabal dependency constraints.
This package used a patch to update the Cabal version constraints for
'language-glsl'.  This is now done in a phase for consistency with
other Haskell packages.

* gnu/packages/elm.scm (elm-compiler): Add a phase that updates the
Cabal file to allow for newer versions of 'ansi-terminal',
'containers', 'http-client', 'language-glsl', and 'network'.
[source]: Remove 'elm-compiler-relax-glsl-bound.patch'.
* gnu/packages/patches/elm-compiler-relax-glsl-bound.patch: Delete file.
* gnu/local.mk: Remove it.
2019-11-20 20:48:50 -05:00
Timothy Sample b4a00fecfd
gnu: ghc-microlens-aeson: Patch tests for i686-linux.
* gnu/packages/patches/ghc-microlens-aeson-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-microlens-aeson): Use it.
2019-11-20 20:48:48 -05:00
Timothy Sample d9b1567a07
gnu: ghc-pandoc: Update to 2.7.3.
* gnu/packages/haskell-xyz.scm (ghc-pandoc): Update to 2.7.3.
[source]: Add patches to fix tests.
[arguments]: Remove '#:phases'.
[inputs]: Remove 'ghc-deepseq-generics', 'ghc-old-locale', and
'ghc-yaml'; add 'ghc-hslua-module-system', 'ghc-hsyaml', 'ghc-ipynb',
and 'ghc-unicode-transforms'.
[native-inputs]: Add 'ghc-tasty-lua'.
* gnu/packages/patches/ghc-pandoc-fix-html-tests.patch: New file.
* gnu/packages/patches/ghc-pandoc-fix-latex-test.patch: New file.
* gnu/local.mk: Add them.
2019-11-20 20:48:46 -05:00
Timothy Sample 10707d5720
gnu: ghc-haddock-library: Update to 1.7.0.
The new source tarball does not have bundled dependencies, so it does
not need to be patched.

* gnu/packages/haskell-xyz.scm (ghc-haddock-library): Update to 1.7.0.
[source]: Remove 'patches', 'modules' and 'snippet'.
[arguments]: Update the 'relax-test-suite-dependencies' phase to allow
newer versions of 'hspec' and 'QuickCheck'; remove the
'add-examples-directory' phase.
* gnu/packages/patches/ghc-haddock-library-unbundle.patch: Delete file.
* gnu/local.mk: Remove it.
2019-11-20 20:48:44 -05:00
Timothy Sample 06344a3a39
gnu: ghc-hpack: Update to 0.31.2.
* gnu/packages/haskell-xyz.scm (ghc-hpack): Update to 0.31.2.
[source]: Use a patch to fix tests.
[inputs]: Add 'ghc-infer-license'.
* gnu/packages/patches/ghc-hpack-fix-tests.patch: New file.
* gnu/local.mk: Add it.
2019-11-20 20:48:38 -05:00
Timothy Sample faac56f3af
gnu: ghc-monad-par: Add a patch to fix tests on GHC 8.6.
* gnu/packages/patches/ghc-monad-par-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-monad-par): Use it.
2019-11-20 20:48:30 -05:00
Timothy Sample a531ff94c3
gnu: ghc-diff: Patch to work with newer QuickCheck.
* gnu/packages/patches/ghc-diff-swap-cover-args.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-diff): Use it.
2019-11-20 20:48:28 -05:00