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52044 Commits (bb357c509e1c017e1fef5aa5f4d05beea0c25157)

Author SHA1 Message Date
Pierre Neidhardt 143eaa82d6
gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:46 +02:00
Pierre Neidhardt 80d8c00c84
gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 2666a3361e
gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt d27f033f97
gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 8f46a9d67f
gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 6a7f366864
gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt eac71f54fe
gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt ef3cc2d883
gnu: Add emacs-trashed.
* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable.
2020-04-28 11:47:45 +02:00
Guillaume Le Vaillant 62d45e463c
gnu: gnuradio-osmosdr: Add hackrf support.
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf.
2020-04-28 10:17:08 +02:00
Christopher Howard 79c4fb4f36
gnu: Add hackrf.
* gnu/packages/radio.scm (hackrf): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2020-04-28 10:17:08 +02:00
Roel Janssen 0ae8505288
gnu: hpcguix-web: Use guile3.0-guix.
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use
  guile3.0 inputs.
2020-04-28 10:13:30 +02:00
Konrad Hinsen d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input.
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-28 09:34:29 +02:00
Ricardo Wurmus b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef.
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0.
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 9c726c485a
gnu: r-hdf5array: Update to 1.14.4.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus cda0683295
gnu: r-seurat: Update to 3.1.5.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5.
[propagated-inputs]: Remove r-metap.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus ed720abc26
gnu: r-topicmodels: Update to 0.2-11.
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 1d9e71ed29
gnu: r-stopwords: Update to 2.0.
* gnu/packages/cran.scm (r-stopwords): Update to 2.0.
[propagated-inputs]: Add r-desc and r-usethis.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 2c439cae92
gnu: r-fda: Update to 5.1.4.
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus e1fe5e9bed
gnu: r-abtest: Update to 0.2.1.
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1.
[propagated-inputs]: Add r-qgam; remove r-vgam.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 169f9fe13a
gnu: Add r-qgam.
* gnu/packages/cran.scm (r-qgam): New variable.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5ffe706b84
gnu: r-systemfonts: Update to 0.2.0.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0.
[inputs]: Remove freetype.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 8165bf6d90
gnu: r-dalex: Update to 1.2.0.
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0.
[propagated-inputs]: Add r-ibreakdown and r-ingredients.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 1816cb262c
gnu: r-rex: Update to 1.2.0.
* gnu/packages/cran.scm (r-rex): Update to 1.2.0.
[propagated-inputs]: Remove r-magrittr.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 838ec254a0
gnu: r-optparse: Update to 1.6.6.
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus bf4e440c19
gnu: r-sf: Update to 0.9-2.
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5123ec7858
gnu: r-future-apply: Update to 1.5.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus c6eb1fe616
gnu: r-etm: Update to 1.1.
* gnu/packages/cran.scm (r-etm): Update to 1.1.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus fbcbf8d586
gnu: r-future: Update to 1.17.0.
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus d62d838bf9
gnu: r-protviz: Update to 0.6.4.
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 71c0a61cac
gnu: r-rgl: Update to 0.100.54.
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus e2a50e5ec4
gnu: r-ggeffects: Update to 0.14.3.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09410f17d2
gnu: r-bayestestr: Update to 0.6.0.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 27588b365f
gnu: r-emmeans: Update to 1.4.6.
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09bb872aff
gnu: r-raster: Update to 3.1-5.
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 35f84a7f27
gnu: r-insight: Update to 0.8.3.
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus f1f77bb64e
gnu: r-tinytex: Update to 0.22.
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus e965442b38
gnu: r-tsp: Update to 1.1-10.
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 839c39b178
gnu: r-broom: Update to 0.5.6.
* gnu/packages/cran.scm (r-broom): Update to 0.5.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92d81a5e5b
gnu: r-distillery: Update to 1.0-7.
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 4c0cf66cfc
gnu: r-ff: Update to 2.2-14.2.
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus d911e22af3
gnu: r-powerlaw: Update to 0.70.6.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6.
[propagated-inputs]: Remove r-vgam; add r-pracma.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92f5ed2fd7
gnu: r-shinyfiles: Update to 0.8.0.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 50f298a54f
gnu: Add r-ibreakdown.
* gnu/packages/cran.scm (r-ibreakdown): New variable.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus befa394f45
gnu: Add r-ingredients.
* gnu/packages/cran.scm (r-ingredients): New variable.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus d29cd83bd8
gnu: r-purrr: Update to 0.3.4.
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 0e3003930e
gnu: r-plotrix: Update to 3.7-8.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 67aced6323
gnu: r-withr: Update to 2.2.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 7ef5f77b91
gnu: r-xml2: Update to 1.3.2.
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 568d1d7bfc
gnu: r-dbplyr: Update to 1.4.3.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 666d97964a
gnu: r-tibble: Update to 3.0.1.
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 288ab9039b
gnu: r-foreign: Update to 0.8-78.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus c1dc7858d7
gnu: r-with-tests, r-minimal: Update to 4.0.0.
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0.
(r-with-tests)[arguments]: Add phase "set-locales".
[native-inputs]: Add texlive-ae, texlive-inconsolata, and
texlive-latex-xkeyval to texlive-union.
[inputs]: Replace pcre with pcre2.
2020-04-28 08:44:01 +02:00
Björn Höfling 89909327d0
gnu: stellarium: Update to 0.20.1.
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
2020-04-28 00:23:35 +02:00
Roel Janssen 78799a6fdc
gnu: Update minimap2 to 2.17.
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27 21:34:10 +02:00
Oleg Pykhalov 693d0fffc8
gnu: Add sbcl-stumpwm-swm-gaps.
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
2020-04-27 22:21:35 +03:00
Vincent Legoll bb6d9e2633
gnu: tarsplitter: Fix typo in description (spilt/split).
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
2020-04-27 20:43:32 +02:00
Alex McGrath 58a361fef4
gnu: Add wf-recorder.
* gnu/packages/video.scm (wf-recorder): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-27 18:22:56 +02:00
Raghav Gururajan c53886a55a
gnu: ktsuss: Use setuid "su" and "sudo" commands.
This has ktsudo actually gain root access.

* gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo}
file names, use the setuid' verrsions.
2020-04-27 18:17:24 +02:00
Boris A. Dekshteyn 138896e1ea
gnu: herbstluftwm: Update to 0.8.1
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27 18:05:11 +02:00
Guillaume Le Vaillant f38ba7b65d
gnu: fldigi: Update to 4.1.12.
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
2020-04-27 16:54:34 +02:00
Jakub Kądziołka 2ef4d273d1
file-systems: mount the PID cgroup filesystem.
* gnu/system/file-systems.scm (%control-groups): Add "pids".
* gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO.

This has allowed me to make a specific configuration of nsjail work.
2020-04-27 14:14:47 +02:00
Roel Janssen 639ae3f20b
gnu: Add python-scikit-rebate.
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
2020-04-27 13:54:43 +02:00
Roel Janssen ccf70a80a1
gnu: Add python-deeptools.
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
2020-04-27 13:43:05 +02:00
Roel Janssen c43edf6f30
gnu: Add python-deeptoolsintervals.
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
2020-04-27 13:39:25 +02:00
Roel Janssen 4c24186ae0
gnu: Add python-bitarray.
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
2020-04-27 13:09:02 +02:00
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund.
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
2020-04-27 11:46:08 +02:00
Roel Janssen 91370829f4
gnu: Add r-inum.
* gnu/packages/cran.scm (r-inum): New variable.
2020-04-27 11:15:38 +02:00
Roel Janssen 415176e89d
gnu: Add r-ggpmisc.
* gnu/packages/cran.scm (r-ggpmisc): New variable.
2020-04-27 11:05:49 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview.
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
2020-04-27 10:57:22 +02:00
Ricardo Wurmus d4f86c8b66
gnu: Add peek.
* gnu/packages/video.scm (peek): New variable.
2020-04-27 10:46:12 +02:00
Ricardo Wurmus c170a15996
gnu: emacs-org-reveal: Fix syntax error in description.
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
2020-04-27 10:45:51 +02:00
Ricardo Wurmus 320dd1195e
gnu: Add texlive-inconsolata.
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
2020-04-27 10:45:51 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter.
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
2020-04-27 10:37:42 +02:00
Roel Janssen e658838c62
gnu: Add r-bezier.
* gnu/packages/cran.scm (r-bezier): New variable.
2020-04-27 10:28:50 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27 10:24:20 +02:00
Roel Janssen df6c7f0487
gnu: Add r-ecp.
* gnu/packages/cran.scm (r-ecp): New variable.
2020-04-27 10:18:48 +02:00
Roel Janssen 8521d93854
gnu: Add r-reordercluster.
* gnu/packages/cran.scm (r-reordercluster): New variable.
2020-04-27 10:11:21 +02:00
Maxim Cournoyer 9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs.
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
2020-04-27 00:54:44 -04:00
Maxim Cournoyer 1ae4325734
gnu: liblinphone: Fix the input type of some dependencies.
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
2020-04-27 00:54:30 -04:00
Maxim Cournoyer 8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
2020-04-27 00:54:30 -04:00
Brice Waegeneire 3b177a6c33
gnu: Add loadable module to wireguard-linux-compat.
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-26 18:24:28 -04:00
Ludovic Courtès 0e5c2d5e14
services: system: Initial entries are non-monadic.
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
2020-04-26 22:49:49 +02:00
Ludovic Courtès 45bd91334f
services: profile: Use a declarative profile.
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:48 +02:00
Ludovic Courtès cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'.
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
2020-04-26 21:34:49 +02:00
Maxim Cournoyer b58a22e5b7
gnu: Add hackneyed-x11-cursors.
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
2020-04-26 15:32:10 -04:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr.
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb.
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla.
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
2020-04-26 21:02:00 +02:00
Christopher Baines f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee.
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
2020-04-26 19:44:33 +01:00
Christopher Baines 53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
2020-04-26 19:41:56 +01:00
Lars-Dominik Braun 910bf1f7a1
gnu: Add tarsplitter.
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-26 21:07:43 +03:00
Leo Famulari ca4b55882a
gnu: Add rav1e.
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-26 19:57:46 +03:00
Efraim Flashner ee8de73814
gnu: python-scanpy: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
2020-04-26 15:03:50 +03:00
Marius Bakke 2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0.
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 52bdd30407
gnu: nim: Adjust for Guile 3.0.
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0.
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0.
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 02de4b1da1
gnu: calcurse: Adjust for Guile 3.0.
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:15 +02:00
Marius Bakke f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0.
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
2020-04-26 13:31:15 +02:00
Eric Brown 660611e5f6
gnu: Add sylpheed.
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:47:19 +02:00
Raghav Gururajan 0745e28d66
gnu: Add xarchiver.
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:25:59 +02:00
Giacomo Leidi 0bf66cbb72
gnu: Add python-osc.
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:15:09 +02:00
Evan Straw bb85018ceb
gnu: hugin: Update to 2019.2.0.
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:14:49 +02:00
Arun Isaac 018114baa7
gnu: maradns: Fix cross compilation.
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
2020-04-26 15:14:46 +05:30
Marius Bakke 796b387bc2
vm: Remove unused import.
* gnu/system/vm.scm: Do not import (gnu packages make-bootstrap).
2020-04-26 11:27:06 +02:00
Efraim Flashner 186f99f0f7
gnu: perl-glib: Update to 1.3292.
* gnu/packages/glib.scm (perl-glib): Update to 1.3292.
2020-04-26 10:22:14 +03:00
Leo Famulari a17e5092bc
gnu: svt-av1: Update to 0.8.2.
* gnu/packages/video.scm (svt-av1): Update to 0.8.2.
2020-04-25 22:26:49 -04:00
Vagrant Cascadian 9b7e41f2d7
gnu: arm-trusted-firmware: Update to 2.3.
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3.
  [source]: Remove hdcp patch.
* gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch.
* gnu/local.mk: Update accordingly.
2020-04-25 17:08:52 -07:00
Oleg Pykhalov 396eb9e1a9
gnu: Add sbcl-stumpwm-globalwindows.
* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable.
2020-04-26 01:59:33 +03:00
Raghav Gururajan 5cca16968e
gnu: pavucontrol: Fix icons.
* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons.
[build-system]: Use glib-or-gtk-build-system instead of gnu-build-system.
[inputs]: Add adwaita-icon-theme.  Re-order inputs.

Since the adwaita icon theme is hard-coded in the application, there is
no choice for the user anyway. So added adwaita-icon-theme to inputs and
changed build-system to glib-or-gtk to fix loading of icons.
2020-04-25 23:01:29 +02:00
Boris A. Dekshteyn 3a5d1c9b6b
gnu: fontmanager: Update to 0.7.7.
* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7.
2020-04-25 22:54:11 +02:00
Holger Peters b0ec8c675e
gnu: python-webob: Update to 1.8.3
* gnu/packages/python-web.scm (python-webob): Update to 1.8.3.
2020-04-25 22:38:11 +02:00
Holger Peters 82bd276d60
gnu: python-pastedeploy: Update to 2.1.0
* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0.
[arguments]: Add test-target.
[native-inputs]: Replace python-nose with python-pytest and python-pytest-runner.
2020-04-25 22:38:11 +02:00
Oskar Köök 731e92f0f8
gnu: elixir: Update to 1.10.3.
* gnu/packages/elixir.scm (elixir): Update to 1.10.3.
2020-04-25 22:26:48 +02:00
TomZ 813a88bb5a
gnu: flowee: Update to 2020.03.2
* gnu/packages/finance.scm (flowee): Update to 2020.03.2
2020-04-25 22:24:00 +02:00
Matthew Kraai ba11dddbfe
gnu: texlive-latex-pdfx: Fix typo.
* gnu/packages/tex.scm (texlive-latex-pdfx)[description]: Fix typo.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-25 22:23:20 +02:00
Efraim Flashner e56ab46ba0
gnu: python-reportlib: Update to 3.5.42.
* gnu/packages/pdf.scm (python-reportlib): Update to 3.5.42.
2020-04-25 22:51:37 +03:00
Efraim Flashner 2d8270ad56
gnu: python-reportlib: Add missing libraries.
* gnu/packages/pdf.scm (python-reportlib)[arguments]: Add
'use-system-libart' configure flag. Add custom phase to find libraries.
[inputs]: Add libart-lgpl, font-curve-files.
2020-04-25 22:46:34 +03:00
Pierre Neidhardt 8cf6d150b4
gnu: Add osicat.
* gnu/packages/lisp-xyz.scm (closicat, sbcl-osicat): New variables.
2020-04-25 19:45:29 +02:00
Mark H Weaver f84b036305
gnu: webkitgtk: Update to 2.28.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.2.
2020-04-24 23:20:09 -04:00
Mark H Weaver f2ce2d1274
gnu: linux-libre@5.6: Update deblob scripts.
* gnu/packages/linux.scm (deblob-scripts-5.6): Update to 5.6.7.
2020-04-24 19:06:13 -04:00
Pierre Langlois c10e8cf75e
gnu: u-boot: Update to 2020.04.
* gnu/packages/bootloaders (u-boot): Update to 2020.04.
  [native-inputs]: Replace sdl with sdl2.

Co-authored-by: Vagrant Cascadian <vagrant@debian.org>
2020-04-24 15:59:44 -07:00
Arun Isaac 0d36d0baea
gnu: Add maradns.
* gnu/packages/dns.scm (maradns): New variable.
2020-04-25 03:43:08 +05:30
Mark H Weaver 1317ff3259
gnu: linux-libre@4.14: Update to 4.14.177.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.177.
(linux-libre-4.14-pristine-source): Update hash.
2020-04-24 18:07:54 -04:00
Mark H Weaver 0c8941b504
gnu: linux-libre@4.9: Update to 4.9.220.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.220.
(linux-libre-4.9-pristine-source): Update hash.
2020-04-24 18:07:18 -04:00
Mark H Weaver 9c8b5d5e08
gnu: linux-libre@4.4: Update to 4.4.220.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.220.
(linux-libre-4.4-pristine-source): Update hash.
2020-04-24 18:06:14 -04:00
Jack Hill 45320ad808
gnu: pdfpc: Upgrade to 4.4.0
* gnu/packages/pdf.scm (pdfpc): Upgrade to 4.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-04-24 23:24:23 +02:00
Marius Bakke 5e57967652
gnu: python-pytest-timeout: Update to 1.3.4.
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.3.4.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PEXPECT.
2020-04-24 23:24:23 +02:00
Raghav Gururajan ddb0fef554
gnu: Add ktsuss.
* gnu/packages/admin.scm (ktsuss): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-24 22:10:57 +02:00
Raghav Gururajan bf37b49cdd
gnu: spacefm: Add dependencies for extra functionality.
* gnu/packages/lxde.scm (spacefm): Add dependencies for extra functionality.

Adding these inputs and making required changes to build-system+arguments;
provides icons, privilege-management and disk-management.
2020-04-24 22:03:09 +02:00
Marius Bakke 9b42918edd
gnu: guix: Update to 7dd0539.
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.7dd0539.
2020-04-24 16:53:43 +02:00
Ludovic Courtès 40fd909e3d
gnu: biber: Downgrade to 2.11.
Biber 2.12 is incompatible with biblatex 3.11, which is what's currently
packaged.  This is a followup to 41a010875b.

* gnu/packages/tex.scm (biber): Downgrade to 2.11.
2020-04-24 16:22:02 +02:00
Ludovic Courtès 122b3cd68d
gnu: biber: Address test failures.
* gnu/packages/patches/biber-sortinithash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (biber)[source]: Use it.
2020-04-24 16:21:13 +02:00
Ludovic Courtès 2520059bdb
pack: 'guix pack -R' wrapper correctly reports exit code.
Fixes <https://bugs.gnu.org/40816>.
Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>.

* gnu/packages/aux-files/run-in-namespace.c (main): In the 'default'
case, check 'WIFEXITED (status)' and exit with the corresponding code in
that case.  Exit with 255 in other cases.
* tests/guix-pack-relocatable.sh: Add test.
2020-04-24 16:21:13 +02:00
Ludovic Courtès 193192ca77
gnu: llvm: Add 10.0.0.
* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10)
(clang-toolchain-10, llvm-9, clang-runtime-9, clang-9)
(clang-toolchain-9): New variables.
(llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to
the '-9' bindings.
* gnu/packages/patches/clang-10.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-04-24 16:21:13 +02:00
Naga Malleswari 4ac3461a80
gnu: Add r-rxnat.
* gnu/packages/cran.scm (r-rxnat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:56:54 +02:00
Naga Malleswari 5b38f038f6
gnu: Add r-rcdd.
* gnu/packages/cran.scm (r-rcdd): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:54:42 +02:00
Naga Malleswari 53269e6971
gnu: Add r-dcv.
* gnu/packages/cran.scm (r-dcv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:53:21 +02:00
Ricardo Wurmus 3a8ee5ef42
gnu: r-tea: Fix typo.
* gnu/packages/cran.scm (r-tea)[description]: Fix typo.
2020-04-24 15:51:52 +02:00
Naga Malleswari 26e5dab74a
gnu: Add r-stam.
* gnu/packages/cran.scm (r-stam): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:51:39 +02:00
Naga Malleswari d234006b38
gnu: Add r-grouped.
* gnu/packages/cran.scm (r-grouped): New variable.
2020-04-24 15:51:39 +02:00
Naga Malleswari aa3fdca85c
gnu: Add r-sgloptim.
* gnu/packages/cran.scm (r-sgloptim): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:51:39 +02:00
Naga Malleswari ea43d299fa
gnu: Add r-aws.
* gnu/packages/cran.scm (r-aws): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:51:38 +02:00
Naga Malleswari fe14871edd
gnu: Add r-awsmethods.
* gnu/packages/cran.scm (r-awsmethods): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:43:01 +02:00
Naga Malleswari ba07c7f067
gnu: Add r-tea.
* gnu/packages/cran.scm (r-tea): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:40:10 +02:00
Ricardo Wurmus a1d369f139
gnu: Add texlive-csquotes.
* gnu/packages/tex.scm (texlive-csquotes): New variable.
2020-04-24 15:19:35 +02:00
Efraim Flashner 1e700c656a
gnu: datamash: Update to 1.7.
* gnu/packages/datamash.scm (datamash): Update to 1.7.
2020-04-24 14:52:32 +03:00
Efraim Flashner 2fea2b6414
gnu: java-eclipse-jetty-test-helper: Don't use unstable tarball.
* gnu/packages/web.scm (java-eclipse-jetty-test-helper)[source]: Download
using git-fetch.
2020-04-24 14:52:32 +03:00
Mark H Weaver 298c113134
gnu: linux-libre: Update to 5.4.35.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.35.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-23 19:57:00 -04:00
Mark H Weaver 3fdccd5ba6
gnu: linux-libre@5.6: Update to 5.6.7.
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.7.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-23 19:56:13 -04:00
Mark H Weaver 887c61e67f
gnu: linux-libre@4.19: Update to 4.19.118.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.118.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-23 19:55:15 -04:00
Guillaume Le Vaillant 5a91563221
gnu: Add wsjtx.
* gnu/packages/radio.scm (wsjtx-hamlib): New variable.
  (wsjtx): New variable.
2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant e6d141652c
gnu: fldigi: Add hamlib support.
* gnu/packages/radio.scm (fldigi)[inputs]: Add hamlib and libusb.
2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant 409dfdf03d
gnu: Add hamlib.
* gnu/packages/radio.scm (hamlib): New package.
2020-04-24 00:00:33 +02:00
Alexandros Theodotou b90b7f16ed
gnu: Add wolf-spectrum.
* gnu/packages/music.scm (wolf-spectrum): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-23 23:59:23 +02:00
Alexandros Theodotou 59be2959a6
gnu: Add wolf-shaper.
* gnu/packages/music.scm (wolf-shaper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-23 23:59:23 +02:00
Leo Famulari 0f25feb159
gnu: Squid: Update to 4.11 [fixes CVE-2020-{11945,12519,12521}].
* gnu/packages/networking.scm (squid): Update to 4.11.
2020-04-23 13:25:14 -04:00
Nicolas Goaziou 54b3d583af
gnu: grammalecte: Update to 1.9.0.
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.9.0.
2020-04-23 19:17:52 +02:00
Tobias Geerinckx-Rice 0fb2bc8392
gnu: liburcu: Update to 0.12.1.
* gnu/packages/datastructures.scm (liburcu): Update to 0.12.1.
2020-04-23 19:07:20 +02:00
Leo Famulari 8e2a423800
gnu: GNU FreeFont: Add a deprecated alias for "font-gnu-freefont-ttf".
This is a followup to commit 5483a2d0a9.

* gnu/packages/fonts.scm (font-gnu-freefont-ttf): New variable.
2020-04-23 12:35:43 -04:00
Ricardo Wurmus cf4a56d748
gnu: Add texlive-marginnote.
* gnu/packages/tex.scm (texlive-marginnote): New variable.
2020-04-23 15:04:12 +02:00
Mathieu Othacehe 938df0de73
Revert "gnu: u-boot: Update to 2020.04."
This reverts commit be0ecfb178.
2020-04-23 13:03:35 +02:00
Nicolas Goaziou 4eff273542
gnu: emacs-4clojure: Fix license.
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[license]: Use GPL3+.
2020-04-23 10:32:06 +02:00
Ryan Prior c47f48d972
gnu: Add visidata.
* gnu/packages/visidata.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-23 07:08:07 +02:00
Nicolas Goaziou 179c59c3d3
gnu: Add pyzo.
* gnu/packages/python-xyz.scm (pyzo): New variable.
2020-04-23 01:12:41 +02:00
Brendan Tildesley 50d31a40f1
gnu: Add piper.
* gnu/packages/gnome.scm (piper): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-23 00:55:51 +02:00
Brendan Tildesley 2cd1de321f
gnu: Add libratbag.
* gnu/packages/gnome.scm (libratbag): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-23 00:49:16 +02:00
Brendan Tildesley e74b2c8e68
gnu: Add python-evdev.
* gnu/packages/linux.scm (python-evdev): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-23 00:49:16 +02:00
Raghav Gururajan 159e9dce17
gnu: Add udevil.
* gnu/packages/disk.scm (udevil): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-23 00:19:21 +02:00
Nicolas Goaziou e36065c1a4
gnu: emacs-4clojure: Fix typos in description.
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[description]: Fix typos.
2020-04-23 00:13:11 +02:00
Nicolas Goaziou 034a3eacf7
gnu: emacs-4clojure: Fix version.
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[version]: Use `git-version' as
there is no proper release.
2020-04-23 00:10:08 +02:00
Alberto Eleuterio Flores Guerrero 4e74cef97a
gnu: Add emacs-4clojure.
* gnu/packages/emacs-xyz.scm (emacs-4clojure): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-23 00:06:23 +02:00
Raghav Gururajan 5483a2d0a9
gnu: font-gnu-freefont: Add otf and woff font types.
* gnu/packages/fonts.scm (font-gnu-freefont): Add otf and woff font types.
* gnu/packages/genealogy.scm (gramps)[inputs]: Replace font-gnu-freefont-tff
with font-gnu-freefont.
* doc/guix.texi: Adjust a reference to the package.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-22 17:59:44 -04:00
John Soo 9fb2b7eeab
gnu: clipmenu: Fix hash.
* gnu/packages/xdisorg.scm (clipmenu):[origin] Update hash.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-22 23:55:33 +02:00
John Soo 541ec4d6e8
gnu: Add emacs-xclip.
* gnu/packages/emacs-xyz.scm (emacs-xclip): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-22 23:47:59 +02:00
Danny Milosavljevic f91ad0b13d
system: Automatically adjust linux-module packages to use the
operating-system's kernel.

* gnu/system.scm (package-for-kernel): New procedure.
(operating-system-directory-base-entries): Use it.
* gnu/tests/linux-module.scm: Test it.
2020-04-22 22:59:39 +02:00
Efraim Flashner 2213d00fac
gnu: wget2: Add support for gnu updater.
* gnu/packages/wget.scm (wget2)[properties]: New field. Add
ftp-directory.
2020-04-22 23:35:54 +03:00
Efraim Flashner c9508c4337
gnu: commoncpp: Add support for gnu updater.
* gnu/packages/telephony.scm (commoncpp)[properties]: New field. Add
ftp-directory, upstream-name.
2020-04-22 23:34:20 +03:00
Efraim Flashner 6ecce47180
gnu: osip: Update to 5.1.1.
* gnu/packages/telephony.scm (osip): Update to 5.1.1.
2020-04-22 23:16:39 +03:00
Efraim Flashner 6439c340a8
gnu: osip: Add support for gnu updater.
* gnu/packages/telephony.scm (osip)[properties]: New field. Add
upstream-name, ftp-directory.
2020-04-22 23:14:19 +03:00
Efraim Flashner f13f02f8b3
gnu: gama: Update to 2.08.
* gnu/packages/gps.scm (gama): Update to 2.08.
2020-04-22 23:10:22 +03:00
Efraim Flashner a9164807bd
gnu: parallel: Update to 20200422.
* gnu/packages/parallel.scm (parallel): Update to 20200422.
2020-04-22 23:10:22 +03:00
Efraim Flashner eee4173ccc
gnu: guile-8sync: Add support for gnu updater.
* gnu/packages/guile-xyz.scm (guile-8sync)[properties]: New field. Add
upstream-name.
2020-04-22 23:10:22 +03:00
Brice Waegeneire 2b0c0d9301
services: Add udev-rules-service helper.
* doc/guix.texi (Base services): Add documentation for
'udev-rules-service'. Replace examples of 'udev-service-type' extension
with 'udev-rules-service'.
* gnu/services/base.scm (udev-rules-service): New procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
Felix Gruber 6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
Brice Waegeneire 93664feee1
system: Split %BASE-PACKAGES in smaller parts.
* gnu/system.scm: (%base-packages-interactive, %base-packages-linux,
%base-packages-networking, %base-packages-utils): New variables.
(%base-packages): Use those new variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:57 +02:00
Raghav Gururajan 3183148992
gnu: Add blueman.
* gnu/packages/networking.scm (blueman): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:57 +02:00
Ludovic Courtès 2e37d1583a
system: 'operating-system-boot-parameters-file' uses 'scheme-file'.
* gnu/system.scm (operating-system-boot-parameters-file): Use
'scheme-file' instead of 'gexp->file'.
(operating-system-directory-base-entries): Adjust accordingly.
2020-04-22 19:23:57 +02:00
Andreas Enge f916ac128a
gnu: pari-gp: Update to 2.11.4.
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.4.
2020-04-22 18:29:52 +02:00
Marius Bakke 8e61dbc828
gnu: ungoogled-chromium: Update to 81.0.4044.122-0.31d6e60 [security fixes].
This fixes CVE-2020-6459, CVE-2020-6460, and CVE-2020-6458.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.122.
(%ungoogled-revision): Set to 31d6e60c96481599b42072b4489e4468280198e3.
(%chromium-origin, %ungoogled-origin): Update hashes.
2020-04-22 16:08:26 +02:00
Marius Bakke 808d12bb08
gnu: qt@4: Update source URI.
* gnu/packages/qt.scm (qt-4)[source](uri): Adjust to current.
2020-04-22 16:08:26 +02:00
Ricardo Wurmus cbd2e1edc8
gnu: Remove mumimu.
* gnu/packages/mail.scm (mumimu): Remove variable.
2020-04-22 15:44:30 +02:00
Ricardo Wurmus decf7f6c41
gnu: mumi: Update to 0.0.0-16.9175199.
* gnu/packages/mail.scm (mumi): Update to 0.0.0-16.9175199.
[inputs]: Add guile-xapian; remove mumimu.
2020-04-22 15:44:30 +02:00
Guillaume Le Vaillant 618819aa2f
gnu: Add w-scan.
* gnu/packages/video.scm (w-scan): New variable.
2020-04-22 11:02:43 +02:00
Arun Isaac ed248424d8
gnu: Add font-meera-inimai.
* gnu/packages/fonts.scm (font-meera-inimai): New variable.
2020-04-22 09:58:38 +05:30
Arun Isaac d2b237d0cc
gnu: Add python-google-brotli.
* gnu/packages/compression.scm (python-google-brotli): New variable.
2020-04-22 09:58:28 +05:30
Mark H Weaver 6e8f58fe31
gnu: linux-libre: Update to 5.4.34.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.34.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-21 18:22:09 -04:00
Mark H Weaver 5800d54bee
gnu: linux-libre@5.6: Update to 5.6.6.
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.6.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-21 18:21:11 -04:00
Mark H Weaver fe8b2fc24a
gnu: linux-libre@4.19: Update to 4.19.117.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.117.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-21 18:20:03 -04:00
Leo Famulari 0b9a117765
gnu: OpenSSL: Update to 1.1.1g [fixes CVE-2020-1967].
* gnu/packages/tls.scm (openssl)[replacement]: Replace with openssl-1.1.1g.
(openssl-1.1.1e): Replace variable with ...
(openssl-1.1.1g): ... this.
2020-04-21 16:03:29 -04:00
Michael Rohleder a1c34680b3
gnu: emacs-dired-toggle-sudo: Update to 1.0-0.13bbe52.
* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): Update to 1.0-0.13bbe52.
* gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-21 12:53:56 -04:00
Ludovic Courtès 7681246325
gnu: shepherd: Add Guile 2.0 variant.
* gnu/packages/admin.scm (guile2.0-shepherd): New variable.
2020-04-21 16:33:21 +02:00
Ludovic Courtès e3358a831e
gnu: shepherd: Update to 0.8.0.
* gnu/packages/admin.scm (shepherd): Update to 0.8.0.
* gnu/services/shepherd.scm (shepherd-configuration-file): Use
'default-pid-file-timeout' instead of fiddling with '%pid-file-timeout'.
2020-04-21 16:33:21 +02:00
Ludovic Courtès aa7b3c6c0e
tests: web: Explicitly wait for the HTTP port.
* gnu/tests/web.scm (run-webserver-test)["HTTP port ready"]: New test.
2020-04-21 16:33:21 +02:00
Ludovic Courtès a295a1ca29
tests: ssh: Explicitly wait for port 22.
Previously we could occasionally try to connect before the server is
actually listening, both for OpenSSH and Dropbear.

* gnu/tests/ssh.scm (run-ssh-test)["wait for port 22"]: New test.
2020-04-21 16:33:21 +02:00
Ricardo Wurmus d10e7a348c
gnu: guile-xapian: Update to 0.1.0.
* gnu/packages/guile-xyz.scm (guile-xapian): Update to 0.1.0.
2020-04-21 14:34:47 +02:00
Pjotr Prins 0e64f12db5
gnu: Add python-rdflib-jsonld.
* gnu/packages/rdf.scm (python-rdflib-jsonld): New variable.
2020-04-21 12:41:47 +03:00
Efraim Flashner 5d29808bea
gnu: rdf.scm: Use license: prefix.
* gnu/packages/rdf.scm: Use a 'license:' prefix for package licenses
instead of only importing a select number of licenses.
2020-04-21 12:38:19 +03:00
Vagrant Cascadian 5327b399a8
gnu: Add u-boot-pinebook-pro-rk3399.
* gnu/packages/bootloaders (u-boot-pinebook-pro-rk3399): New variable.
* gnu/packages/patches/u-boot-DT-for-Pinebook-Pro.patch: New file.
* gnu/packages/patches/u-boot-add-boe-nv140fhmn49-display.patch: New file.
* gnu/packages/patches/u-boot-gpio-keys-binding-cons.patch: New file.
* gnu/packages/patches/u-boot-leds-common-binding-con.patch: New file.
* gnu/packages/patches/u-boot-support-Pinebook-Pro-laptop.patch: New file.
* gnu/packages/patches/u-boot-video-rockchip-fix-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patches.
* gnu/bootloader/u-boot.scm (install-pinebook-pro-rk3399-u-boot,
  u-boot-pinebook-pro-rk3399-bootloader): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2020-04-20 19:13:35 -07:00
Raghav Gururajan 41169f21e6
gnu: liblinphone: Fix icons.
* gnu/packages/linphone.scm (liblinphone): Fix icons.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-04-20 21:50:27 -04:00
Vagrant Cascadian ce5f4701d1
gnu: obs: Update to 25.0.7.
* gnu/packages/video (obs): Update to 25.0.7.
2020-04-20 15:10:18 -07:00
Ludovic Courtès 71977a6c59
Revert "system: Don’t create a module database when no modules are available."
This reverts commit b2fff3b5de.

Fixes <https://bugs.gnu.org/40713>.
Reported by pkill9 <pkill9@runbox.com>.

This commit is incorrect: its effect depends on whether KERNEL's build
output is already available in the store, it breaks with non-package
kernels as reported at <https://bugs.gnu.org/40713>, and the
LINUX-MODULE-DATABASE hook is required at all times since
5c79f23863 removed the relevant bits from
the 'linux-libre' package.
2020-04-21 00:06:40 +02:00
Ludovic Courtès a322e9d16b
services: etc: Detect and report duplicate entries.
Fixes <https://bugs.gnu.org/40729>.
Reported by Christopher Baines <mail@cbaines.net>.

* gnu/services.scm (files->etc-directory)[assert-no-duplicates]: New
procedure.
Use it.
2020-04-21 00:06:40 +02:00
Ludovic Courtès b25ecfa2e0
services: dovecot: 'stop' method returns #f upon success.
* gnu/services/mail.scm (dovecot-shepherd-service)[stop]: Use 'invoke'
instead of 'make-forkexec-constructor'.  Previously, the 'stop' method
would return the PID of the "dovecot stop" process, which would be
interpreted as a failure to stop the service.
2020-04-21 00:06:40 +02:00
Ludovic Courtès 7d903d2ff7
services: Don't use the deprecated 'make-forkexec-constructor' call.
Passing 'make-forkexec-constructor' a string or several string arguments
has been deprecated since dmd 0.1.

* gnu/services/base.scm (rngd-service-type): In 'start' method, pass a
list as the first argument to 'make-forkexec-constructor'.
* gnu/services/desktop.scm (bluetooth-shepherd-service): Likewise.
* gnu/services/spice.scm (spice-vdagent-shepherd-service): Likewise.
2020-04-21 00:06:40 +02:00
Ludovic Courtès b6cb4aeff8
gnu: mcron: Remove now unneeded phase.
This is a followup to a52aa7fdef.

* gnu/packages/guile-xyz.scm (mcron)[arguments]: Remove
'fix-finding-guile'.
2020-04-21 00:06:39 +02:00
Leo Famulari b023a8acd3
gnu: cgit: Update Git source code to 2.25.4.
* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.4.
2020-04-20 16:21:08 -04:00
Leo Famulari 781af06533
gnu: Git: Update to 2.26.2 [fixes CVE-2020-11008].
* gnu/packages/version-control.scm (git): Update to 2.26.2.
[native-inputs]: Update git-manpages.
2020-04-20 16:21:04 -04:00
Naga Malleswari 2eac967ab7
gnu: xfce.scm: Sort module imports.
* gnu/packages/xfce.scm: Sort module imports.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 21:32:22 +02:00
Florian Pelz 80dbad1814
installer: Rename uvesafb shepherd service to maybe-uvesafb.
Because the installer's uvesafb service loads uvesafb only on some machines.

This is a follow-up to commit 0ad60b2a89.

* gnu/system/install.scm (uvesafb-shepherd-service): Adjust provision and
description fields.
2020-04-20 19:24:21 +00:00
R Veera Kumar 9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 20:05:09 +02:00
Raghav Gururajan e71c7f6abe
gnu: Add midori.
* gnu/packages/web-browsers.scm (midori): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-20 18:54:33 +02:00
Eric Brown e68c8d3ef8
gnu: Add r-bridgesampling.
* gnu/packages/cran.scm (r-bridgesampling): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-20 15:11:08 +02:00
Efraim Flashner a8f01c45c6
gnu: java-bouncycastle: Don't use unstable tarball.
* gnu/packages/java.scm (java-bouncycastle)[source]: Download using
git-fetch. Use upstream's repo, not a mirror.
2020-04-20 08:42:06 +03:00
Efraim Flashner 6632fc2897
gnu: java-lz4: Don't use unstable tarball.
* gnu/packages/java.scm (java-lz4)[source]: Download using git-fetch.
[arguments]: Add phase to make files writable.
2020-04-20 08:42:06 +03:00
Efraim Flashner e9917c696b
gnu: java-fest-assert: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-assert)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 79e7400883
gnu: java-fest-test: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-test)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 00f3190d6b
gnu: java-fest-util: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-util)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 8c2a6183de
gnu: graphene: Update to 1.10.0.
* gnu/packages/gtk.scm (graphene): Update to 1.10.0.
[build-system]: Switch to meson-build-system.
[arguments]: Update configure-flags to not install tests.
[inputs]: Remove python2. Move gobject-introspection ...
[native-inputs]: ... to here. Remove autoconf, automake, libtool, which.
2020-04-20 08:42:05 +03:00
Efraim Flashner 6914eea01d
gnu: sparql-query: Sort inputs alphabetically.
* gnu/packages/databases.scm (sparql-query)[inputs]: Sort alphabetically.
2020-04-20 08:42:05 +03:00
Efraim Flashner ce64b9d136
gnu: sparql-query: Don't use unstable tarball.
* gnu/packages/databases.scm (sparql-query)[source]: Download using
git-fetch.
2020-04-20 08:42:02 +03:00
Pierre Langlois 096a0527a1
gnu: mu: Update to 1.4.
* gnu/packages/mail.scm (mu): Update to 1.4.
[arguments]: Remove 'fix-date-tests phase. Add 'patch-bin-sh-in-tests phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-19 18:36:27 -04:00
Ludovic Courtès 5e7076f2a5
services: Add 'simulated-wifi-service-type'.
* gnu/services/networking.scm (simulated-wifi-shepherd-services): New
procedure.
(simulated-wifi-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2020-04-19 23:50:17 +02:00
Ludovic Courtès a03943ec00
services: Add 'hostapd-service-type'.
* gnu/services/networking.scm (<hostapd-configuration>): New record
type.
(hostapd-configuration-file, hostapd-shepherd-services): New
procedures.
(hostapd-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2020-04-19 23:50:17 +02:00
Julien Lepiller 4313e6ec55
gnu: php: Update to 7.4.5.
* gnu/packages/php.scm (php): Update to 7.4.5.
2020-04-19 22:57:16 +02:00
Danny Milosavljevic 58d5b8b44b
Revert "gnu: libxfce4util: Update to 4.15.0."
This reverts commit c0bff513a4.
2020-04-19 18:44:24 +02:00
Nicolas Goaziou 5c10d55206
gnu: emacs-org-superstar: Update to 1.2.1.
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.2.1.
2020-04-19 14:33:30 +02:00
Raghav Gururajan a3cbcbaf8b
gnu: Add notification-daemon.
* gnu/packages/gnome.scm (notification-daemon): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-19 13:27:07 +02:00
Martin Becze 0639a24038
gnu: Add trezord-udev-rules.
* gnu/packages/finance.scm (trezord-udev-rules): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-19 13:27:06 +02:00
Mathieu Othacehe ea6594e08e
installer: connman: Fix Wifi connection.
Issue reported by SergioBG here:
https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00432.html.

Due to default buffering mode, the installer was reading from the pipe without
having actually written a command before.

* gnu/installer/connman.scm (connman-connect-with-auth): Set pipe buffering
mode to 'line.
2020-04-19 11:46:21 +02:00
Efraim Flashner fafe2343c2
services: sddm: Have sddm provision xorg-server.
* gnu/services/sddm.scm (sddm-shepherd-service)[shepherd-service]: Have
sddm provision 'xorg-server like the other display managers.
2020-04-19 09:06:20 +03:00
Efraim Flashner de5200ada9
gnu: python-cython: Update to 0.29.16.
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.16.
2020-04-18 22:50:59 +03:00
Efraim Flashner cac674d99d
gnu: qrcodegen-cpp: Update to 1.6.0.
* gnu/packages/aidc.scm (qrcodegen-cpp): Update to 1.6.0.
2020-04-18 22:23:51 +03:00
Efraim Flashner 0144f8def8
gnu: vim-asyncrun: Update to 2.7.5.
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.5.
2020-04-18 22:23:48 +03:00
Leo Famulari d7041a69ed
gnu: libavif: Update to 0.7.1.
* gnu/packages/image.scm (libavif): Update to 0.7.1.
[arguments]: Run the test suite.
2020-04-18 15:08:36 -04:00
Giacomo Leidi 190f460f98
gnu: Add node-semver.
* gnu/packages/node-xyz.scm (node-semver): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-18 21:36:26 +03:00