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114250 Commits (bca0afda01b0dbc56366023256a47cadfc8b3576)

Author SHA1 Message Date
Ricardo Wurmus 8db5bea2ba
gnu: r-shortread: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 7c53819208
gnu: r-shinymethyl: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 6264a7cca0
gnu: r-seqpattern: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus bbdb686878
gnu: r-seqlogo: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e9d0d590f
gnu: r-scry: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3cd53df25a
gnu: r-scmap: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70433802aa
gnu: r-scdblfinder: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 22f63061e3
gnu: r-scannotatr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.6.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 2521248770
gnu: r-rtracklayer: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 04a5521933
gnu: r-rsamtools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus c2f9c0af28
gnu: r-rhdf5filters: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 4e9e8ed194
gnu: r-rhdf5: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.44.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus cc5dc923a6
gnu: r-regioner: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 07a18fe524
gnu: r-rcas: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus bc5d14d246
gnu: r-rbgl: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.76.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70af2c3137
gnu: r-protgenerics: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e08912fcd
gnu: r-pcamethods: Update to 1.92.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus fdf3453dad
gnu: r-pcaexplorer: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus e408cd70e8
gnu: r-oscope: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.30.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 18d4032d2a
gnu: r-organismdbi: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.42.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3c31e017e2
gnu: r-organism-dplyr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.28.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 394c951ba2
gnu: r-mzr: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3e05ea0edb
gnu: r-mzid: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.38.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6d09227e1f
gnu: r-msnid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6bbb3bedb1
gnu: r-msnbase: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 5c6355ca35
gnu: r-msa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-msa): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus ba6ed3ff40
gnu: r-mutationalpatterns: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.10.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 37e95f3c9c
gnu: r-muscat: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus da92987a4b
gnu: r-mmuphin: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.14.0.
[propagated-inputs]: Remove r-biocstyle.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 2ebeeeb438
gnu: r-methylkit: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 15efeebe53
gnu: r-metaneighbor: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.20.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 0ee6b4203d
gnu: r-metagenomeseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.42.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 380e27f153
gnu: r-maser: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.18.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3c8d7bd3c6
gnu: r-manor: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.72.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6e5c2c48df
gnu: r-makecdfenv: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.76.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 4d1208e654
gnu: r-made4: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 343036f151
gnu: r-maaslin2: Update to 1.13.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d1da543257
gnu: r-limma: Update to 3.56.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus b962e908a0
gnu: r-keggrest: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 2c32ed3955
gnu: r-interactivedisplaybase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.38.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus ab9cdb4082
gnu: r-impute: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 8d8a7d55e2
gnu: r-rhtslib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.2.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus c3882920fd
gnu: r-hpar: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.42.0.
[propagated-inputs]: Add r-experimenthub.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus fdc4c55da2
gnu: r-harshlight: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.72.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus f7a3988fc7
gnu: r-gseabase: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.62.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 57e4aab4ee
gnu: r-gostats: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.66.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 96613abcc5
gnu: r-globaltest: Update to 5.54.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.54.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 5cb6453b43
gnu: r-glad: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.64.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus a6f4e6e7fb
gnu: r-genomicranges: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 7c75371b19
gnu: r-genomicfiles: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00