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Author SHA1 Message Date
Ricardo Wurmus 613906c7f0
gnu: r-interval: Update to 1.1-1.0. 
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-1.0.
 2023-08-28 14:22:45 +02:00
Ricardo Wurmus 1c4a1fc562
gnu: r-activepathways: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.0.
 2023-08-28 14:22:45 +02:00
Ricardo Wurmus 0aefe075c1
gnu: r-ggpicrust2: Update to 1.7.2. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.2.
 2023-08-28 14:22:45 +02:00
Ricardo Wurmus af2d5c0da1
gnu: r-flexdashboard: Update to 0.6.2. 
* gnu/packages/cran.scm (r-flexdashboard): Update to 0.6.2.
[source]: Remove unnecessary module import.
[native-inputs]: Replace label for esbuild; add comments; update
js-featherlight to 1.3.5.
 2023-08-28 14:22:45 +02:00
Ricardo Wurmus cce45c2c0d
gnu: r-magick: Update to 2.7.5. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.5.
[properties]: Protect imagemagick input from updater.
[inputs]: Add pcre2.
 2023-08-28 14:22:45 +02:00
Ricardo Wurmus 382eba2656
gnu: r-shinytree: Update to 0.3.1. 
* gnu/packages/cran.scm (r-shinytree): Update to 0.3.1.
[source]: Simplify snippet.
[arguments]: Use esbuild for minification; drop trailing #T from build phase.
[native-inputs]: Replace node-uglify-js with esbuild.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 3a2f1d98eb
gnu: r-bookdown: Update to 0.35. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.35.
[properties]: Prevent updater from adding r-knitr.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus f260c878c0
gnu: r-colourpicker: Update to 1.3.0. 
* gnu/packages/cran.scm (r-colourpicker): Update to 1.3.0.
[source]: Delete minified JavaScript files.
[arguments]: Do not delete JavaScript files in build phase.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 1d325d1fdb
gnu: r-bslib: Update to 0.5.1. 
* gnu/packages/cran.scm (r-bslib): Update to 0.5.1.
[source]: Delete more minified JavaScript files.
[arguments]: Adjust JavaScript build code.
[native-inputs]: Update typescript-components repository.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 95966cd5fa
gnu: r-future-callr: Update to 0.8.2. 
* gnu/packages/cran.scm (r-future-callr): Update to 0.8.2.
[properties]: Protect r-markdown from updater.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus c7c7dfcfa6
gnu: r-curl: Update to 5.0.2. 
* gnu/packages/cran.scm (r-curl): Update to 5.0.2.
[properties]: Protect "curl" input from updater.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 47629756b6
gnu: r-httr: Update to 1.4.7. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.7.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus e67dce9934
gnu: r-gtable: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.4.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 5092c98c12
gnu: r-cairo: Add optional libraries. 
* gnu/packages/statistics.scm (r-cairo)[inputs]: Remove libxt; add harfbuzz,
icu4c, libjpeg-turbo, and libtiff.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 11038f9509
gnu: r-cairo: Update to 1.6-1. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.6-1.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus edddda11cd
gnu: r-quantreg: Update to 5.97. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.97.
[arguments]: Quote phases instead of argument list.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 84e63470de
gnu: r-acepack: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.2.
[properties]: Protect gfortran input from updater.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 7fa2aacade
gnu: r-proj4: Update to 1.0-13. 
* gnu/packages/cran.scm (r-proj4): Update to 1.0-13.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 4aeee4b57d
gnu: r-spatial: Update to 7.3-17. 
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-17.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 091bf43b7f
gnu: r-survival: Update to 3.5-7. 
* gnu/packages/statistics.scm (r-survival): Update to 3.5-7.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 05044a5446
gnu: r-ggplot2: Update to 3.4.3. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.3.
 2023-08-28 14:22:43 +02:00
宋文武 4a49a89b09
gnu: intel-xed: Update to 2023.08.21. 
* gnu/packages/assembly.scm (intel-xed): Update to 2023.08.21.
[source]: Remove patches.
[native-inputs]: Remove tcsh.  Update mbuild to 2022.07.28.
* gnu/packages/patches/intel-xed-fix-nondeterminism.patch: Remove file
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-08-28 18:12:06 +08:00
宋文武 7533ed956c
gnu: anki: Fix preferences error. 
Fixes <https://issues.guix.gnu.org/65506>.

* gnu/packages/education.scm (anki)[source]: Add snippet.
 2023-08-28 18:07:17 +08:00
宋文武 23bcc85765
gnu: Add fonttosfnt. 
* gnu/packages/xorg.scm (fonttosfnt): New variable.
 2023-08-28 18:05:38 +08:00
宋文武 af1efa6f27
gnu: Add font-unscii. 
* gnu/packages/fonts.scm (font-unscii): New variable.
 2023-08-28 18:05:20 +08:00
宋文武 ceff14b7cd
gnu: Add gdb-multiarch. 
* gnu/packages/gdb.scm (gdb-multiarch): New variable.
 2023-08-28 18:01:07 +08:00
Navid Afkhami 058ce073da
gnu: Add r-ggstatsplot. 
* gnu/packages/cran.scm (r-ggstatsplot): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami ffa3355458
gnu: Add r-correlation. 
* gnu/packages/cran.scm (r-correlation): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami 47f69a881a
gnu: Add r-statsexpressions. 
* gnu/packages/cran.scm (r-statsexpressions): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 9892efde37
gnu: Add r-wrs2. 
* gnu/packages/cran.scm (r-wrs2): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 458832c16e
gnu: Add r-mc2d. 
* gnu/packages/cran.scm (r-mc2d): New variable.
 2023-08-28 10:38:07 +02:00
Ricardo Wurmus 3b92730212
gnu: r-oompadata: Update home page to HTTPS. 
* gnu/packages/cran.scm (r-oompadata)[home-page]: Use HTTPS.
 2023-08-28 10:29:43 +02:00
Navid Afkhami 32cdced051
gnu: Add r-oompabase. 
* gnu/packages/cran.scm (r-oompabase): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:29:26 +02:00
Navid Afkhami 48d90820e4
gnu: Add r-oompadata. 
* gnu/packages/cran.scm (r-oompadata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:25:50 +02:00
Navid Afkhami cf941786ee
gnu: Add r-mousegastrulationdata. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:19:53 +02:00
Navid Afkhami aa47077a8b
gnu: Add r-bumpymatrix. 
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:17:27 +02:00
Navid Afkhami 0b0e050415
gnu: Add r-msigdb. 
* gnu/packages/bioconductor.scm (r-msigdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:06:37 +02:00
Navid Afkhami aaf261cc8c
gnu: Add r-earlywarnings. 
* gnu/packages/cran.scm (r-earlywarnings): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:01:17 +02:00
Navid Afkhami 432cf5b449
gnu: Add r-tgp. 
* gnu/packages/cran.scm (r-tgp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:58:06 +02:00
Navid Afkhami 2dc030f38f
gnu: Add r-maptree. 
* gnu/packages/cran.scm (r-maptree): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:54:46 +02:00
Navid Afkhami dd14ee0676
gnu: Add python-scdamandtools. 
* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:50:08 +02:00
Leo Famulari 0aa74bebe3
gnu: linux-libre 6.1: Update to 6.1.47. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47.
(linux-libre-6.1-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Leo Famulari 96d89018a0
gnu: linux-libre: Update to 6.4.12. 
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12.
(linux-libre-6.4-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Tobias Geerinckx-Rice 5a2c3352d8
Revert "gnu: system: Add home-directory-permissions field to <user-account>." 
This reverts commit e9a5eebc78, which
as far as I can tell breaks system roll-backs thusly:

[...]
In gnu/build/accounts.scm:
   239:27  3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >)
In unknown file:
           2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>)
In ice-9/boot-9.scm:
  1685:16  1 (raise-exception _ #:continuable? _)
  1685:16  0 (raise-exception _ #:continuable? _)

ice-9/boot-9.scm:1685:16: In procedure raise-exception:
In procedure string-append: Wrong type (expecting string): #t
 2023-08-20 02:00:00 +02:00
Greg Hogan 37cca1d87e
gnu: vbz-compression: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 1ae56be99e
gnu: spdlog: Fix tests. 
* gnu/packages/patches/spdlog-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/logging.scm (spdlog)[source]: Use patch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 68b3d71806
gnu: catch2: Update to 3.4.0. 
* gnu/packages/check.scm (catch2): Update to 3.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:44 +01:00
Cayetano Santos e7c7efc296
gnu: emacs-corfu-doc-terminal: Update to 0.9. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:30 +01:00
Cayetano Santos 35421248b1
gnu: emacs-gptel: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:07 +01:00
Greg Hogan 6482f61a0c
gnu: python-graph-tool: Update to 2.57. 
* gnu/packages/graph.scm (python-graph-tool): Update to 2.57.
[propagated-inputs]: Add python-zstandard.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:10:23 +01:00