6cb7477699
gnu: python-statsmodels: Update to 0.8.0.
...
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
2017-03-06 23:24:11 +01:00
4535a93adb
gnu: python-matplotlib: Update to 2.0.0.
...
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:22:22 +01:00
550bd98b41
gnu: Add python2-subprocess32.
...
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-06 23:21:34 +01:00
e20784e65e
gnu: texlive: Fix CVE-2016-10243.
...
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
2017-03-06 16:47:37 -05:00
40c611a41d
gnu: wxwidgets: Fix for Filezilla client.
...
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-04 23:15:01 -05:00
c35745edc4
gnu: kio: Fix CVE-2017-6410.
...
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
2017-03-04 18:35:17 -05:00
21abf092a4
gnu: arb: Update to 2.10.0.
...
* gnu/packages/algebra.scm (arb): Update to 2.10.0.
* gnu/packages/patches/arb-ldconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2017-03-03 18:33:19 +01:00
3b175eab84
gnu: nss, nss-certs: Update to 3.29.2.
...
* gnu/packages/certs.scm (nss-certs): Update to 3.29.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.2.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to context changes.
2017-03-03 17:26:24 +01:00
3f98071ac5
Merge branch 'python-tests'
2017-03-03 16:55:43 +01:00
92ae98e2a0
gnu: mupdf: Fix CVE-2017-{5896,5991}.
...
* gnu/packages/patches/mupdf-CVE-2017-5896.patch,
gnu/packages/patches/mupdf-CVE-2017-5991.patch: New files.
* gnu/packages/pdf.scm (mupdf/fixed)[source]: Add patches.
* gnu/local.mk (dist_patch_DATA): Add them.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-03 04:47:52 -05:00
479c4273e6
gnu: Add jacal.
...
* gnu/packages/maths.scm (jacal): New variable.
* gnu/packages/patches/jacal-fix-texinfo.patch: New file.
2017-03-02 18:17:26 +01:00
d8bcf08088
gnu: vdirsyncer: Update to 0.15.0.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.15.0.
[source]: Remove obsolete patch 'vdirsyncer-test-suite-slow-machines.patch'.
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-01 22:33:11 -05:00
13e4a6c863
gnu: screen: Update to 4.5.1.
...
* gnu/packages/screen.scm (screen): Update to 4.5.1.
[source]: Remove patch.
* gnu/packages/patches/screen-CVE-2017-5618.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-28 21:01:26 +02:00
8779987bba
Merge branch 'master' into python-tests
2017-02-27 12:42:22 +01:00
1d8e727357
gnu: gst-plugins-base: Update to 1.10.4.
...
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.4.
[source]: Remove obsolete patch 'gst-plugins-base-fix-test-on-32bit.patch'
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-27 04:04:51 -05:00
b01a89854b
gnu: Remove unused patch.
...
This is a followup to 6f9d5b2e8c
2017-02-26 21:41:21 +01:00
ffa771d2b4
gnu: vim: Use upstream fix for CVE-2017-5953.
...
* gnu/packages/patches/vim-CVE-2017-5953.patch: Adjust to match upstream changes.
2017-02-26 12:04:16 -05:00
1885bb0c08
gnu: python-dendropy: Fix failing tests.
...
* gnu/packages/patches/python-dendropy-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch.
2017-02-24 23:44:31 +01:00
42945fb58c
gnu: python-fake-factory: Fix build on 32bit.
...
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
2017-02-24 18:55:29 +01:00
1d311009fe
gnu: util-linux: Fix CVE-2017-2616.
...
* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
2017-02-23 15:01:54 -05:00
1c851cbe0c
gnu: shadow: Fix CVE-2017-2616.
...
* gnu/packages/patches/shadow-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shadow): Use it.
2017-02-23 14:59:50 -05:00
bd1450f1e4
gnu: ntfs-3g: Fix patch for CVE-2017-0358.
...
This is a followup to commit 1a82ba660e
2017-02-18 14:20:38 -05:00
a1e3ed6e8b
gnu: python-pbr: Support python-sphinx>=1.2.1.
...
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: New file.
* gnu/packages/python.scm (python-pbr-minimal): Use the new patch file.
2017-02-18 16:43:37 +01:00
945b6721eb
gnu: vdirsyncer: Don't fail the test suite when the build machine is slow.
...
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dav.scm (vdirsyncer)[source]: Use it.
2017-02-18 10:24:03 -05:00
1ae04e3511
gnu: vim: Fix CVE-2017-5953.
...
* gnu/packages/patches/vim-CVE-2017-5953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/vim.scm (vim)[source]: Use it.
2017-02-14 14:24:04 -05:00
4fc282b32a
gnu: netsurf: Enable tests.
...
* gnu/packages/patches/netsurf-longer-test-timeout.patch,
gnu/packages/patches/netsurf-y2038-tests.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/web.scm (netsurf)[source]: Use them.
[native-inputs]: Add libidn, check.
[inputs]: Add miscfiles.
[arguments]: Remove #:tests?, add #:test-target. Add 'patch-check phase.
2017-02-13 22:28:33 -06:00
710806b57b
gnu: netsurf: Use unbundled source.
...
* gnu/packages/patches/netsurf-system-utf8proc.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (netsurf)[source]: Use it. Change to unbundled source
tarball.
[native-inputs]: Add netsurf-buildsystem, nsgenbind. Remove flex, bison.
[inputs]: Add utf8proc, libcss, libdom, libnsbmp, libnsgif, libnspsl,
libnsutils, libsvgtiny. Remove expat, gperf.
[arguments]: Adjust #:make-flags for netsurf-buildsystem. Delete configure
phase. Adjust source directories.
2017-02-13 22:28:33 -06:00
43bfbf1370
gnu: Add hubbub.
...
* gnu/packages/web.scm (hubbub): New variable.
2017-02-13 22:28:25 -06:00
57c211cd71
gnu: netsurf: Upgrade to 3.6.
...
* gnu/packages/web.scm (netsurf): Upgrade to 3.6.
[source]: 'https' -> 'http'. Remove modules, snippet, and patches.
[home-page]: 'https' -> 'http'.
[arguments]: Adjust source directories.
* gnu/packages/patches/netsurf-about.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-13 20:59:19 -06:00
bb6043fe9f
gnu: python-pygit2: Skip tests requiring network access.
...
* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches):
New field.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-02-14 00:04:59 +01:00
424b1ae769
Merge branch 'master' into python-tests
2017-02-13 22:35:05 +01:00
d6065945ff
gnu: screen: Fix CVE-2017-5618.
...
* gnu/packages/patches/screen-CVE-2017-5618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
2017-02-12 10:26:02 -05:00
37acc8a07b
gnu: qemu: Fix CVE-2017-{5667,5898,5931}.
...
* gnu/packages/patches/qemu-CVE-2017-5667.patch,
gnu/packages/patches/qemu-CVE-2017-5898.patch,
gnu/packages/patches/qemu-CVE-2017-5931.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-02-12 10:25:53 -05:00
ae953ead0f
gnu: spice: Fix CVE-2016-9577 and CVE-2016-9578.
...
* gnu/packages/patches/spice-CVE-2016-9577.patch,
gnu/packages/patches/spice-CVE-2016-9578-1.patch,
gnu/packages/patches/spice-CVE-2016-9578-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/spice.scm (spice)[source]: Use them.
2017-02-11 20:12:41 +01:00
dcb550e599
gnu: slurm: Update to 16.05.9.1.
...
* gnu/packages/parallel.scm (slurm): Update to 16.05.9.1.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Removing two contribs which are added in the new version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-02-11 20:12:41 +01:00
4153ef23f5
gnu: shadow: Update to 4.4.
...
* gnu/packages/admin.scm (shadow): Update to 4.4.
[source]: Adjust URL.
* gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-02-11 13:43:42 -05:00
1a82ba660e
gnu: ntfs-3g: Fix CVE-2017-0358.
...
* gnu/packages/linux.scm (ntfs-3g)[source]: Add patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-02-09 22:27:51 -05:00
65064909ed
gnu: libvpx: Update to 1.6.1.
...
* gnu/packages/video.scm (libvpx): Update to 1.6.1.
* gnu/packages/patches/libvpx-CVE-2016-2818.patch: Adjust to indentation changes.
2017-02-09 14:58:54 +01:00
206af46fe1
gnu: vsearch: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-02-09 21:21:29 +10:00
1ac675a583
gnu: p7zip: Fix CVE-2016-9256.
...
* gnu/packages/compression.scm (p7zip)[source]: Add patch.
* gnu/packages/patches/p7zip-CVE-2016-9296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-02-03 22:17:41 +02:00
b352b57655
gnu: qemu: Patch CVE-2017-{2615, 5578, 5579, 5856}.
...
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2017-2615,
gnu/packages/patches/qemu-CVE-2017-5578,
gnu/packages/patches/qemu-CVE-2017-5579,
gnu/packages/patches/qemu-CVE-2017-5856: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-02-03 21:56:35 +02:00
feeeee2418
gnu: gst-plugins-base: Fix build on 32bit.
...
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
2017-02-02 16:55:35 +01:00
a3df7e9f86
gnu: httpd: Update to 2.4.25 [fixes CVE-2016-{0736,2161,5387,8743}].
...
* gnu/packages/web.scm (httpd): Update to 2.4.25.
[source]: Remove obsolete patch 'httpd-CVE-2016-8740.patch'.
* gnu/packages/patches/httpd-CVE-2016-8740.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-01 18:14:55 -05:00
fd05d7ecd9
gnu: libevent: Skip tests that fail on 32bit.
...
* gnu/packages/patches/libevent-2.1-skip-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent)[source]: Use it.
2017-02-01 22:38:25 +01:00
e8fc1a0dcf
gnu: libevent: Update to 2.1.8 [security fixes].
...
* gnu/packages/libevent.scm (libevent): Update to 2.1.8.
[inputs]: Change 'python-wrapper' to 'python-2'. Move 'which' to ...
[native-inputs]: ... here. New field.
(libevent-2.0): New variable.
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
gnu/packages/patches/libevent-2.0-evdns-fix-remote-stack-overread.patch
gnu/packages/patches/libevent-2.0-evdns-fix-searching-empty-hostnames.patch
gnu/packages/patches/libevent-2.0-evutil-fix-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Change 'libevent' to 'libevent-2.0'.
2017-02-01 02:42:12 +01:00
41e8e07919
gnu: Add omake.
...
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
2017-01-31 21:35:27 +01:00
59ae241f71
gnu: Add xinetd.
...
* gnu/packages/web.scm (xinetd): New variable.
* gnu/packages/patches/xinetd-CVE-2013-4342.patch,
gnu/packages/patches/xinetd-fix-fd-leak.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-31 15:06:19 -05:00
d8e85b2032
gnu: ghc-8: Update to 8.0.2.
...
* gnu/packages/haskell.scm (ghc-8): Update to 8.0.2.
[arguments]: Remove #:modules, #:imported-modules and phase
configure-testsuite.
* gnu/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-01-30 14:39:35 +01:00
4ab09ac868
gnu: ldc: Add missing patches.
...
This is a followup to commit 2429dde57d
2017-01-28 03:07:57 -05:00
0769cea697
gnu: openjpeg: Fix CVE-2016-{9572,9573}.
...
* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Use it.
2017-01-24 16:19:03 -05:00
Marius Bakke
Thomas Danckaert
Leo Famulari
rennes
Andreas Enge
Alex Vong
John Darrington
Efraim Flashner
Ricardo Wurmus
Danny Milosavljevic
Eric Bavier
Carolili
ng0
Kei Kebreau
Ben Woodcroft
Julien Lepiller
Thomas Danckaert
Federico Beffa