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52692 Commits (c6447c39172f457c901fbab2af08884b4a5f659e)

Author SHA1 Message Date
Brett Gilio 300a5dea3d
gnu: emacs-tablist: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-tablist): Adjust indentation.
2019-12-27 19:35:22 -06:00
Brett Gilio 73f1273375
gnu: emacs-mmm-mode: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Adjust indentation.
2019-12-27 19:35:03 -06:00
Brett Gilio b1c223cc90
gnu: emacs-graphviz-dot-mode: Update to 0.4.1.
* gnu/packages/emacs-xyz.scm (emacs-graphviz-dot-mode): Update to 0.4.1.
2019-12-27 19:34:42 -06:00
Brett Gilio ed07acbfab
gnu: emacs-google-maps: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-google-maps): Adjust indentation.
2019-12-27 19:34:12 -06:00
Brett Gilio 889aa5800a
gnu: emacs-direnv: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-direnv): Adjust indentation.
2019-12-27 19:33:44 -06:00
Brett Gilio 2bd859f0c4
gnu: emacs-calfw: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-calfw): Adjust indentation.
2019-12-27 19:33:22 -06:00
Brett Gilio 499570c6e6
gnu: emacs-autothemer: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-autothemer): Adjust indentation.
2019-12-27 19:33:00 -06:00
Brett Gilio e79b94b69e
gnu: emacs-ag: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-ag): Adjust indentation.
2019-12-27 19:32:30 -06:00
Brett Gilio 8fccd2003c
gnu: emacs-emms-mode-line-cycle: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-emms-mode-line-cycle): Adjust indentation.
2019-12-27 19:31:46 -06:00
Brett Gilio 7c776b255f
gnu: emacs-wget: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-wget): Adjust indentation.
2019-12-27 19:31:17 -06:00
Brett Gilio 5b225909bc
gnu: emacs-reformatter: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-reformatter): Adjust indentation.
2019-12-27 19:30:51 -06:00
Brett Gilio 9af09e9c8f
gnu: emacs-dante: Modify version number.
* gnu/packages/emacs-xyz.scm (emacs-dante): Use version number matching tag reference.
2019-12-27 19:30:16 -06:00
Brett Gilio e0f88157c1
gnu: emacs-haskell-mode: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Adjust indentation.
2019-12-27 19:29:52 -06:00
Brett Gilio 0546537f9d
gnu: emacs-graphql: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-graphql): Adjust indentation.
2019-12-27 19:29:03 -06:00
Brett Gilio dd33cff68a
gnu: emacs-minions: Update to 0.3.2.
* gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.2.
2019-12-27 19:28:44 -06:00
Brett Gilio 421845afaf
gnu: emacs-with-editor: Update to 2.9.0.
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 2.9.0.
2019-12-27 19:28:21 -06:00
Brett Gilio 97b22ac571
gnu: emacs-doom-themes: Update to 2.1.6-3.
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-3.
[arguments]<emacs-batch-disable-compilation>: Add new "material" theme to list
of exceptions.
2019-12-27 17:05:00 -06:00
Leo Prikler 1cc0445e40
gnu: emacs-doom-themes: Only disable breaking compilations.
* gnu/packages/emacs-xyz.scm (emacs-doom-themes)[phases]:
<build>: Readd this phase.
<disable-breaking-compilation>: Add this phase to work around single file
errors in bytecompilation.

Signed-off-by: Brett Gilio <brettg@gnu.org>
2019-12-27 16:57:28 -06:00
Leo Prikler 9ce3f7f6dc
guix: emacs-utils: Add emacs-batch-disable-compilation.
* guix/build/emacs-utils.scm (emacs-batch-disable-compilation):
New procedure.

Signed-off-by: Brett Gilio <brettg@gnu.org>
2019-12-27 16:54:52 -06:00
Ricardo Wurmus bd824de3ad
gnu: r-inspect: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus c314ff7cd4
gnu: r-multiassayexperiment: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0718948912
gnu: r-rgadem: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0be4d7de9c
gnu: r-clusterprofiler: Update to 3.14.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 7621bf2d19
gnu: r-enrichplot: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus eb6d1adf15
gnu: r-biocsingular: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus be94400cd4
gnu: r-affycoretools: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 366cb041e1
gnu: r-car: Update to 3.0-6.
* gnu/packages/statistics.scm (r-car): Update to 3.0-6.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus e2eb77598a
gnu: r-robust: Update to 0.4-18.2.
* gnu/packages/statistics.scm (r-robust): Update to 0.4-18.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 96211e3f33
gnu: r-bigmemory: Update to 4.5.36.
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.36.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus adc1f22332
gnu: r-foreign: Update to 0.8-74.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-74.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 976ef4cd52
gnu: r-slam: Update to 0.1-47.
* gnu/packages/cran.scm (r-slam): Update to 0.1-47.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 1d3c31a23c
gnu: r-bibtex: Update to 0.4.2.1.
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus 04b181cb15
gnu: r-topgo: Update to 2.38.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.38.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus 4997ff5c1b
gnu: r-summarizedexperiment: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus ba17429d67
gnu: r-delayedarray: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus 152a408051
gnu: r-biocparallel: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus 827d0fa846
gnu: r-shortread: Update to 1.44.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.
2019-12-27 21:30:21 +01:00
Christopher Baines abfe3c5aa2
gnu: guix-data-service: Update to 0.0.1-12.f56935a.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-12.f56935a.
2019-12-27 14:47:29 +00:00
Ludovic Courtès b3011dbbd2
doc: Mention "make authenticate".
* doc/contributing.texi (Building from Git): Add instructions to run
'git verify-commit' and 'make authenticate'.
2019-12-27 13:52:49 +01:00
Ludovic Courtès 787766ed1e
git-authenticate: Keep a local cache of previously-authenticated commits.
A list of already-authenticated commits is kept in
~/.cache/guix/authentication.  This speeds up subsequent "make
authenticate" invocations.

* build-aux/git-authenticate.scm (authenticated-commit-cache-file)
(previously-authenticated-commits, cache-authenticated-commit): New
procedures.
(git-authenticate): Define 'authenticated-commits' and pass it as a
third argument to 'commit-difference'.  Add call to
'cache-authenticated-commit'.  Don't display signing stats when STATS is
null.
2019-12-27 13:52:49 +01:00
Ludovic Courtès 785af04a75
git: 'commit-difference' takes a list of excluded commits.
* guix/git.scm (commit-closure): Add 'visited' optional parameter.
(commit-difference): Add 'excluded' optional parameter; pass second
argument to 'commit-closure'.
* tests/git.scm ("commit-difference, excluded commits"): New test.
2019-12-27 13:52:49 +01:00
Ludovic Courtès 1e43ab2c03
Add 'build-aux/git-authenticate.scm'.
* build-aux/git-authenticate.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
(commit_v1_0_1): New variable.
(authenticate): New target.
2019-12-27 13:52:49 +01:00
Nicolas Goaziou 6ab59cfd27
gnu: emacs-org-contrib: Update to 20191226.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20191226.
2019-12-27 09:44:26 +01:00
Nicolas Goaziou 50257d2764
gnu: emacs-org: Update to 9.3.1.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.1.
2019-12-27 09:42:02 +01:00
Brett Gilio a9650f1135
gnu: emacs-telega: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4.
[arguments]: Working around imagemagick and svg is no longer needed.
[native-inputs]: Replace emacs-minimal with emacs. This is needed because
bytecompilation requires fringe-bitmap support.
2019-12-26 13:10:37 -06:00
Hartmut Goebel b291c9570d
gnu: Add ffmpegthumbs.
* gnu/packages/kde-multimedia.scm (ffmpegthumbs): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel 2d11fbcf10
gnu: Add audiocd-kio.
* gnu/packages/kde-multimedia.scm (audiocd-kio): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel 6f936d8740
gnu: Add libkcompactdisc.
* gnu/packages/kde-multimedia.scm (libkcompactdisc): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel ca632dc175
gnu: Add kamoso.
* gnu/packages/kde-multimedia.scm (kamoso): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel abd4d57851
gnu: Add elisa.
* gnu/packages/kde-multimedia.scm (elisa): New variable.
2019-12-26 16:44:53 +01:00