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Author SHA1 Message Date
Tobias Geerinckx-Rice
c7b51b799d
gnu: esmtp: Fix build with libesmtp >= 1.1.0. 
* gnu/packages/mail.scm (esmtp)[source]: Add patch.
* gnu/packages/patches/esmtp-add-lesmtp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-24 23:59:07 +02:00
Guillaume Le Vaillant
e463e09dc2
services: dhcpd: Fix activation with IPv6 configuration. 
* gnu/services/networking.scm (dhcpd-activation): Pass the IP version
  parameter to dhcpd.
 2021-07-24 15:38:03 +02:00
Pierre Neidhardt
fe0c3aee02
gnu: Add feeder. 
* gnu/packages/lisp-xyz.scm (cl-feeder, ecl-feeder, sbcl-feeder): New variables.
 2021-07-24 11:58:45 +02:00
Tobias Geerinckx-Rice
c3c003be69
gnu: java-xmlpull2: Use mirrored source and archived home page. 
* gnu/packages/xml.scm (java-xmlpull2)[source]: Download from a Gentoo
distfiles mirror.
[home-page]: Point to an archive.org snapshot.
 2021-07-23 23:29:34 +02:00
Marius Bakke
277f58040b
gnu: graphviz: Use HTTPS home page. 
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
 2021-07-23 17:29:34 +02:00
Marius Bakke
379bb236d4
gnu: php: Update to 7.4.21. 
* gnu/packages/php.scm (php): Update to 7.4.21.
[arguments]: Remove trailing #t's.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
 2021-07-23 17:29:34 +02:00
Ludovic Courtès
c4918b54bb
gnu: tmux-themepack: Tweak description. 
* gnu/packages/tmux.scm (tmux-themepack)[description]: Tweak.
 2021-07-23 17:02:29 +02:00
Matthew James Kraai
efcd669c5a
gnu: tmux-themepack: Update to 1.1.0. 
* gnu/packages/tmux.scm (tmux-themepack): Update to 1.1.0.
[arguments]: Install only selected files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-23 17:02:29 +02:00
Ludovic Courtès
7273b66945
gnu: modules: Avoid FHS file names in 'add.modules'. 
* gnu/packages/package-management.scm (modules)[arguments]: Add
'patch-add-modules' phase.
 2021-07-23 17:02:29 +02:00
Ivan Gankevich
8bcd920c71
gnu: Add modules. 
* gnu/packages/package-management.scm (modules): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-23 17:02:28 +02:00
Ludovic Courtès
1665bb0cec
gnu: hpcguix-web: Update to 0.1.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.1.0.
[arguments]: In 'wrap-program' phase, change "/bin/run" to
"/bin/hpcguix-web".
[inputs]: Add BASH-MINIMAL.
* gnu/services/web.scm (hpcguix-web-shepherd-service): Run
"/bin/hpcguix-web".
 2021-07-23 17:02:28 +02:00
Andreas Enge
b48bc8953d
gnu: pari-gp: Update to 2.13.2. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.2.
 2021-07-23 15:28:03 +02:00
Leo Prikler
4e19ad0fde
gnu: gnome-maps: Update to 3.38.5. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.38.5.
 2021-07-23 12:41:01 +02:00
Guillaume Le Vaillant
785c96fbe1
gnu: Add radvd. 
* gnu/packages/admin.scm (radvd): New variable.
 2021-07-23 11:33:36 +02:00
宋文武
89ea0918a4
gnu: Add drawterm. 
* gnu/packages/plan9.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2021-07-22 19:52:53 +08:00
Pierre Neidhardt
d98fc80ffb
gnu: Add cl-libxml2. 
* gnu/packages/lisp-xyz.scm (cl-libxml2, ecl-cl-libxml2, sbcl-cl-libxml2): New
variables.
 2021-07-22 13:03:52 +02:00
Ricardo Wurmus
aa2686c368
gnu: r-opencpu: Update to 2.2.4. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.4.
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
9cfa6c3c58
gnu: Add r-opencpu 
* gnu/packages/cran.scm: (r-opencpu): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
2b6dd1bde5
gnu: Add r-protolite 
* gnu/packages/cran.scm: (r-protolite): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
c5baff1796
gnu: Add r-webutils 
* gnu/packages/cran.scm (r-webutils): New variable.
 2021-07-22 11:37:21 +02:00
Paul Garlick
b05a1eb5e3
gnu: Add python-dolfin-adjoint. 
* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
 2021-07-22 10:03:53 +01:00
jgart
4c63efa5e3
gnu: Add abjad-ext-ipython. 
* gnu/packages/music.scm (abjad-ext-ipython): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:50:14 +03:00
jgart
ccfcbadd68
gnu: Add abjad-ext-nauert. 
* gnu/packages/music.scm (abjad-ext-nauert): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:48:45 +03:00
jgart
a909460099
gnu: Add abjad-ext-rmakers. 
* gnu/packages/music.scm (abjad-ext-rmakers): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:48:41 +03:00
Efraim Flashner
454460ca55
gnu: abjad: Remove obsolete phase. 
* gnu/packages/music.scm (abjad)[arguments]: Remove custom 'patch-source
phase.
 2021-07-22 11:14:33 +03:00
Efraim Flashner
91c42e4767
gnu: abjad: Move lilypond to inputs. 
* gnu/packages/music.scm (abjad)[native-inputs]: Move lilypond ...
[inputs]: ... to here.
 2021-07-22 11:13:57 +03:00
jgart
18f9e21b18
gnu: abjad: Improve description. 
* gnu/packages/music.scm (abjad)[description]: Improve abjad's
description.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:06:58 +03:00
jgart
dd7c2d2b1d
gnu: abjad: Move python-ply to propagated-inputs. 
* gnu/packages/music.scm (abjad)[ntaive-inputs]: Move python-ply ...
[propagated-inputs]: ... to here.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:05:41 +03:00
jgart
5535d5435e
gnu: python-abjad: Rename to abjad. 
* gnu/packages/music.scm (abjad): Rename from python-abjad.
(python-abjad): Keep as deprecated package.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:04:10 +03:00
Efraim Flashner
fd8aea010f
gnu: python-pysam: Make the check phase honor the tests? argument. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust
custom 'check phase to skip tests when #:tests is #f.
 2021-07-22 10:58:22 +03:00
Efraim Flashner
877792a6a7
gnu: python-pysam: Update to 0.16.0.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.16.0.1.
[arguments]: Update custom 'check phase.
[propagated-inputs]: Replace htslib-1.9 with 1.10.
[native-inputs]: Add python-pytest. Replace samtools-1.9 with 1.10,
bcftools-1.9 with 1.10.
(bcftools-1.9): Replace with bcftools-1.10.
[native-inputs]: Replace htslib-1.9 with 1.10.
(samtools-1.9): Replace with samtools-1.10.
[inputs]: Replace htslib-1.9 with 1.10.
 2021-07-22 10:57:41 +03:00
Efraim Flashner
cc4906d13b
gnu: Add htslib-1.10. 
* gnu/packages/bioinformatics.scm (htslib-1.10): New variable.
 2021-07-22 10:50:58 +03:00
Efraim Flashner
309b38bed6
gnu: python-biopython: Update to 1.73. 
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
 2021-07-22 09:14:12 +03:00
Eric Bavier
55db762b31
gnu: onionshare: Update to 2.3.2. 
* gnu/packages/tor.scm (onionshare-cli, onionshare): Update to 2.3.2.
(onionshare)[inputs]: Add python-colorama.
[arguments]: Insert "import pytest" for later "pytest.mark.skip".
 2021-07-21 23:08:14 -05:00
Joseph LaFreniere
e9d47ee718
gnu: Add emacs-seeing-is-believing. 
* gnu/packages/emacs-xyz.scm (emacs-seeing-is-believing): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-22 00:02:33 +02:00
Ludovic Courtès
de1ae96184
gnu: guile-git: Update to 0.5.2. 
Fixes <https://issues.guix.gnu.org/48855>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

* gnu/packages/guile.scm (guile-git): Update to 0.5.2.
 2021-07-22 00:02:30 +02:00
Maxim Cournoyer
4f51a4ac27
utils: Do not request block buffering in pretty-print-table. 
Re-testing 'guix package -A' using the default line buffering set in (guix
ui), there doesn't seem to be a performance gain to use block buffering, so
remove this extraneous side effect.

* guix/utils.scm (pretty-print-table): Do not set buffering mode to block.

Reported-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-21 17:42:30 -04:00
Giacomo Leidi
1f07d4436c
gnu: extempore: Update to 0.8.9. 
* gnu/packages/music.scm (extempore): Update to 0.8.6.
[source]: Portaudio is no more in-tree.
[arguments]: Load external libraries through patched CMakeLists.txt.
[phases]: Symlink assets.
* gnu/packages/patches/extempore-unbundle-external-dependencies.patch:
Update accordingly.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-07-21 23:00:51 +02:00
Lars-Dominik Braun
403a689625
gnu: Add python-sparqlkernel. 
* gnu/packages/jupyter.scm (python-sparqlkernel): New variable.
 2021-07-21 13:36:09 +02:00
Lars-Dominik Braun
281808170a
gnu: Add python-sparqlwrapper. 
* gnu/packages/rdf.scm (python-sparqlwrapper): New variable.
 2021-07-21 13:36:09 +02:00
Lars-Dominik Braun
d57c34d26b
gnu: Add python-bash-kernel. 
* gnu/packages/jupyter.scm (python-bash-kernel): New variable.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
73830b5da3
gnu: Add r-battenberg. 
* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
ed636babfa
gnu: Add r-ascat. 
* gnu/packages/bioinformatics.scm (r-ascat): New variable.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
690df95d1a
gnu: Add nanosv. 
* gnu/packages/bioinformatics.scm (nanosv): New variable.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
2b665b8a49
gnu: Add python-pyvcf. 
* gnu/packages/bioinformatics.scm (python-pyvcf): New variable.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
086c6800cf
gnu: checkm: Rename and update to 1.1.3. 
Renamed from python2-checkm-genome to checkm to better reflect its
status as standalone-application and support for Python 3.

* gnu/packages/bioinformatics.scm (python2-checkm-genome): Redirect to…
(checkm): …here and update to 1.1.3.
[propagated-inputs]: Move to inputs.
[inputs]: Use Python 3 dependencies.
[home-page]: Point to real home-page.
 2021-07-21 13:36:08 +02:00
Lars-Dominik Braun
18a02fe7ca
gnu: Add tombo. 
* gnu/packages/bioinformatics.scm (tombo): New variable.
 2021-07-21 13:36:07 +02:00
Lars-Dominik Braun
117988b7ca
gnu: Add r-rmisc. 
* gnu/packages/cran.scm (r-rmisc): New variable.
 2021-07-21 13:36:07 +02:00
Lars-Dominik Braun
2925d84196
gnu: Add r-glinternet. 
* gnu/packages/statistics.scm (r-glinternet): New variable.
 2021-07-21 13:36:07 +02:00
Lars-Dominik Braun
f711ba28d2
gnu: Add r-naniar. 
* gnu/packages/statistics.scm (r-naniar): New variable.
 2021-07-21 13:36:07 +02:00