103de43c67
gnu: r-umap: Update to 0.2.5.0.
...
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
2020-03-09 08:51:40 +01:00
ea20989d87
gnu: r-rcppannoy: Update to 0.0.16.
...
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
2020-03-09 08:51:40 +01:00
207ba868a3
gnu: r-quantmod: Update to 0.4-16.
...
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
2020-03-09 08:51:40 +01:00
bcbcd17d45
gnu: r-vcd: Update to 1.4-6.
...
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
2020-03-09 08:51:40 +01:00
fec7f576b4
gnu: r-ggrepel: Update to 0.8.2.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
2020-03-09 08:51:36 +01:00
af96c1e0e4
services: cuirass: Allow passing extra command line options.
...
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
2020-03-08 23:46:11 +00:00
d8ab68b929
services: guix-data-service: Allow passing extra options.
...
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.
* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
2020-03-08 23:35:03 +00:00
67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df.
...
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
2020-03-08 23:35:00 +00:00
94d57ba339
gnu: python-virtualenv: Update to 20.0.8.
...
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
[arguments]: Remove the now-redundant 'disable-failing-test phase.
[native-inputs]: Add python-setuptools and python-setuptools-scm.
[inputs]: Add python-{appdirs, distlib, filelock, six,
importlib-metadata}.
2020-03-09 00:20:49 +01:00
6e79208954
gnu: python-xyz: Add python-filelock.
...
* gnu/packages/python-xyz.scm (python-filelock): New variable.
2020-03-09 00:20:47 +01:00
f2a6483084
gnu: python-xyz: Add python-distlib.
...
* gnu/packages/python-xyz.scm (python-distlib): New variable.
2020-03-09 00:20:46 +01:00
830eac9c27
gnu: ngless: Update to 1.1.0.
...
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08 23:37:09 +01:00
3f68f76eaf
gnu: Add jack-select.
...
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08 23:13:11 +01:00
46a864e7c1
gnu: taxtastic: Update to 0.8.11.
...
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08 22:50:16 +01:00
d6d0e10b3d
gnu: guile-next: Revert to 3.0.0.
...
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.
* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
2020-03-08 22:15:54 +01:00
3d33ca27b2
gnu: Add perl-config-inifiles.
...
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08 21:50:44 +01:00
d0ca79e53d
gnu: Add perl-attribute-util.
...
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08 21:50:32 +01:00
30acf2f959
gnu: Add font-opendyslexic.
...
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
2020-03-08 22:42:33 +02:00
e5059c95aa
gnu: beep: Remove dependency on GCC 8.
...
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08 21:21:57 +01:00
1d91680c84
gnu: beep: Update to 1.4.9.
...
* gnu/packages/terminals.scm (beep): Update to 1.4.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
f6713b55a1
services: certbot: Add server option.
...
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
9ef37e81d6
system: Export 'operating-system' missing fields.
...
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
1a30351bf3
gnu: guile-next: Update to 3.0.1.
...
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL.
2020-03-08 21:21:57 +01:00
c32897b6e4
gnu: r-robust: Update to 0.5-0.0.
...
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08 16:02:04 +01:00
7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08 16:02:04 +01:00
dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
6434f9b634
gnu: Reword and extend descriptions for some KDE packages.
...
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
kontactinterface, kpimtextedit)[description]: Reword and extend.
(ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
(kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
2020-03-08 14:06:00 +01:00
1eb3b2b666
gnu: Add emacs-org-journal.
...
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
2020-03-08 11:19:16 +01:00
e2ca10a46f
gnu: python-umap-learn: Fix build.
...
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
run the test suite.
2020-03-08 10:20:22 +01:00
5fdc5b2d57
services: nfs: Run rpc.mountd in foreground.
...
Fixes <https://bugs.gnu.org/39708 >.
Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.
* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
2020-03-08 00:26:02 -05:00
be3908fa14
gnu: QEMU: Fix CVE-2020-8608.
...
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2020-03-07 16:37:25 -05:00
83ac7cb42b
gnu: brotli: Remove package
...
Same package is provided by google-brotli.
* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
d9476a3700
gnu: woff2: Update to 1.0.2
...
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
74ff08e6b8
gnu: ccache: Fix indentation
...
* gnu/packages/ccache.scm (ccache): Fix indentation
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
9eb456b8c7
gnu: ccache: Update to 3.7.7.
...
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules.
...
Discussed at <https://bugs.gnu.org/39926 >.
* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
2020-03-07 22:30:00 +01:00
8ab060b68b
gnu: guile: Add 2.2.7.
...
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-07 22:29:44 +01:00
2519e4cba8
gnu: emacs-xr: Update to 1.17.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
2020-03-07 21:42:45 +01:00
f61b980f5d
gnu: emacs-relint: Update to 1.15.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
2020-03-07 21:41:06 +01:00
1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:55 +01:00
667f799641
gnu: r-survival: Update to 3.1-11.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
2020-03-07 20:03:43 +01:00
d8545835bd
gnu: r-lifecycle: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:32 +01:00
a97c648c61
gnu: r-covr: Update to 3.5.0.
...
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:21 +01:00
4882fcd292
gnu: r-pscl: Update to 1.5.5.
...
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
2020-03-07 20:03:11 +01:00
15d3ac75ce
gnu: r-mosaic: Add r-knitr.
...
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
2020-03-07 20:02:52 +01:00
c68c7e2fbf
gnu: r-insight: Update to 0.8.2.
...
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
2020-03-07 20:02:35 +01:00
491ce4f083
gnu: r-heatmaply: Add r-knitr.
...
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
2020-03-07 20:02:14 +01:00
d56553edc3
gnu: r-methylkit: Add r-knitr.
...
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
2020-03-07 19:42:34 +01:00
06fc1882f2
gnu: r-ggrepel: Add r-knitr.
...
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
2020-03-07 19:38:31 +01:00
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
2020-03-07 19:31:47 +01:00
bf3722f9db
gnu: r-depecher: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-07 19:31:47 +01:00
a2512e436b
gnu: r-xcms: Update to 3.8.2.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
2020-03-07 19:31:47 +01:00
f0aaa4482a
gnu: r-yamss: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
2020-03-07 19:31:47 +01:00
56bf00b94e
gnu: r-viridis: Add r-knitr.
...
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
2020-03-07 19:31:46 +01:00
3b7c644569
gnu: r-vsn: Add r-knitr.
...
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
2020-03-07 19:31:46 +01:00
9eed0a74f9
fd: Install bash completion properly.
...
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
the dash in "bash-completion.d" with an underscore.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-07 18:32:27 +01:00
880a316591
gnu: anki: Fix mpv audio playback
...
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
PATH to include mpv executable.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-07 17:29:34 +01:00
262d6ed465
gnu: next: Fix build with SBCL 2.0.2.
...
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
on SBCL 2.0.2.
2020-03-07 17:12:35 +01:00
322ea25c56
gnu: s6-rc: Update to 0.5.1.2.
...
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
2020-03-07 16:04:20 +01:00
072102f651
gnu: s6-portable-utils: Update to 2.2.2.2.
...
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
2020-03-07 16:04:20 +01:00
82853fbf8c
gnu: s6-networking: Update to 2.3.1.2.
...
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
2020-03-07 16:04:20 +01:00
5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2.
...
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
2020-03-07 16:04:20 +01:00
1d57075049
gnu: scm: Update to 5f3.
...
* gnu/packages/scheme.scm (scm): Update to 5f3.
2020-03-07 16:04:20 +01:00
db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592].
...
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
2020-03-07 16:04:20 +01:00
e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs
...
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
2020-03-07 16:04:20 +01:00
e7ba60ddce
gnu: unbound: Update to 1.10.0.
...
* gnu/packages/dns.scm (unbound): Update to 1.10.0.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-07 14:51:37 +01:00
4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597].
...
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-03-07 14:27:06 +01:00
4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages.
...
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
2020-03-07 12:48:19 +01:00
c82ddf3360
gnu: java-joda-convert: Use HTTPS home page.
...
* gnu/packages/java.scm (java-joda-convert)[home-page]: Use HTTPS.
2020-03-07 12:48:19 +01:00
4d1ddb5156
gnu: java-log4j-1.2-api: Use HTTPS home page.
...
* gnu/packages/java.scm (java-log4j-1.2-api)[home-page]: Use HTTPS.
2020-03-07 12:48:19 +01:00
c901060547
gnu: java-testng: Use HTTPS home page.
...
* gnu/packages/java.scm (java-testng)[home-page]: Use HTTPS.
2020-03-07 12:48:19 +01:00
b93a0c1e6d
gnu: java-junit: Use HTTPS home page.
...
* gnu/packages/java.scm (java-junit)[home-page]: Use HTTPS.
2020-03-07 12:48:19 +01:00
a809d63252
gnu: java-openchart2: Use HTTPS home page.
...
* gnu/packages/java.scm (java-openchart2)[home-page]: Use HTTPS.
2020-03-07 12:48:19 +01:00
a15b45290d
gnu: raincat: Update home page.
...
* gnu/packages/haskell-apps.scm (raincat)[home-page]: Update.
2020-03-07 12:48:18 +01:00
f23365fa2c
gnu: instantmusic: Update home page.
...
* gnu/packages/music.scm (instantmusic)[home-page]: Update.
2020-03-07 12:48:18 +01:00
5969598149
gnu: openblas: Use HTTPS home page.
...
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
14a5146f3a
gnu: python-execnet: Use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-execnet)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
cc31d17263
gnu: emacs-ffap-rfc-space: Use HTTPS home page.
...
* gnu/packages/emacs-xyz.scm (emacs-ffap-rfc-space)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
6a0d1bd390
gnu: librecad: Use HTTPS home page.
...
* gnu/packages/engineering.scm (librecad)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
c0dc417909
gnu: spice: Update to 0.14.3.
...
* gnu/packages/spice.scm (spice): Update to 0.14.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/spice-fix-test-armhf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-07 12:48:18 +01:00
beecf815db
gnu: xfce4-weather-plugin: Update to 0.10.1.
...
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.1.
2020-03-07 12:48:18 +01:00
3a5557a4d2
gnu: xfce4-clipman-plugin: Update to 1.4.4.
...
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.4.
2020-03-07 12:48:18 +01:00
0bbf14ce93
gnu: xfce4-clipman-plugin: Don't use NAME in source URI.
...
* gnu/packages/xfce.scm (xfce4-clipman-plugin)[source]: Hard-code NAME.
2020-03-07 12:48:17 +01:00
ece22a25b6
gnu: fmt: Switch back to url-fetch.
...
* gnu/packages/pretty-print.scm (fmt)[source]: Use url-fetch instead of
git-fetch since upstream uploads releases. Both approaches produce the
same package, but git-fetch requires more bandwidth.
2020-03-07 12:37:14 +01:00
0bc557fd70
gnu: cl-dbus: Remove unneeded inputs.
...
* gnu/packages/lisp-xyz.scm (cl-dbus)[propagated-inputs]: Remove iolib
subpackages now that iolib properly references them.
2020-03-07 11:30:11 +01:00
af5c4efff6
gnu: sbcl-iolib: Fix build to refer to its subpackages properly.
...
* gnu/packages/lisp-xyz.scm (sbcl-iolib): Inherit from its subpackages instead
of the other way around, so that they are automatically referenced in the
generated .asd.
2020-03-07 11:28:32 +01:00
5fb3c00256
gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation".
...
* gnu/packages/golang (go-golang.org-x-sync-errgroup)[synopsis]: Fix typo.
2020-03-06 20:13:30 -08:00
52c733124a
gnu: rust-named-pipe-0.4: Fix spelling of "asynchronous"
...
* gnu/packages/crates-io (rust-named-pipe-0.4)[synopsis]: Fix typo.
[description]: Fix typo.
2020-03-06 20:13:28 -08:00
92f4583208
gnu: r-d3network: Fix typo "This package".
...
* gnu/packages/cran (r-d3network)[description]: Fix typo.
2020-03-06 20:13:25 -08:00
5b309c6242
gnu: ksystemlog: Fix spelling of "occurring".
...
* gnu/packages/kde-sytemtools (ksystemlog)[description]: Fix typo.
2020-03-06 20:13:23 -08:00
adca9882be
gnu: unicode-cldr-common: Fix spelling of "information".
...
* gnu/packages/unicode (unicode-cldr-common)[description]: Fix typo.
2020-03-06 20:13:19 -08:00
374540ff65
gnu: sdl-pango: Rename patch to fix guix lint warning about patch filename size.
...
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapToSurface.patch:
Rename to ...
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch:
... this.
* gnu/local.mk: Update accordingly.
* gnu/packages/sdl.scm: Update accordingly.
2020-03-06 17:34:00 -08:00
789c02478a
gnu: akonadi: Rename patch to fix guix lint warning about patch filename size.
...
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relocatabl.patch:
Rename to ...
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch:
... this.
* gnu/packages/kde-pim (akonadi) Update accordingly.
* gnu/local.mk: Update accordingly.
2020-03-06 17:33:56 -08:00
b2ce10e3a9
gnu: yasm: Use HTTPS home page.
...
* gnu/packages/assembly.scm (yasm)[home-page]: Use HTTPS.
2020-03-07 01:42:51 +01:00
a4fdde47cc
gnu: jq: Use HTTPS home page.
...
* gnu/packages/web.scm (jq)[home-page]: Use HTTPS.
2020-03-07 01:42:51 +01:00
c61bfa08ed
gnu: xerces-c: Use HTTPS home page.
...
* gnu/packages/xml.scm (xerces-c)[home-page]: Use HTTPS.
2020-03-07 01:42:51 +01:00
898dc4947f
gnu: ytalk: Use HTTPS home page.
...
* gnu/packages/messaging.scm (ytalk)[home-page]: Use HTTPS.
2020-03-07 01:42:51 +01:00
1d7be5938b
gnu: re2c: Use HTTPS home page.
...
* gnu/packages/re2c.scm (re2c)[home-page]: Use HTTPS.
2020-03-07 01:42:51 +01:00
fc10386909
gnu: zimg: Update to 2.9.3.
...
* gnu/packages/image.scm (zimg): Update to 2.9.3.
2020-03-07 01:41:24 +01:00
290fe81ddc
gnu: bluefish: Update to 2.2.11.
...
* gnu/packages/gnome.scm (bluefish): Update to 2.2.11.
[inputs]: Replace python-2 with python-wrapper.
2020-03-07 01:41:23 +01:00
99aa7a2d6f
gnu: bluefish: Don't use NAME in source URI.
...
* gnu/packages/gnome.scm (bluefish)[source]: Hard-code NAME.
2020-03-07 01:41:23 +01:00
eda580c079
gnu: rhythmbox: Update to 3.4.4.
...
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.4.
2020-03-07 01:41:23 +01:00
2588693df1
gnu: rhythmbox: Don't use NAME in source URI.
...
* gnu/packages/gnome.scm (rhythmbox)[source]: Hard-code NAME.
2020-03-07 01:41:23 +01:00
d748843312
gnu: knot: Update to 2.9.3.
...
* gnu/packages/dns.scm (knot): Update to 2.9.3.
2020-03-07 01:41:23 +01:00
ed2d015d29
gnu: hplip: Update to 3.20.2.
...
* gnu/packages/cups.scm (hplip): Update to 3.20.2.
2020-03-07 01:41:23 +01:00
64df1416c2
gnu: gkrellm: Update to 2.3.11.
...
* gnu/packages/gkrellm.scm (gkrellm): Update to 2.3.11.
2020-03-07 01:41:23 +01:00
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
2020-03-06 15:04:34 -05:00
c2f41cb3e8
gnu: linux-libre: Update to 5.4.24.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.24.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-06 14:20:30 -05:00
5d01cc3673
gnu: linux-libre@4.19: Update to 4.19.108.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.108.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-06 14:19:34 -05:00
a009a3eead
gnu: ungoogled-chromium: Increase max-silent-time.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Add
'max-silent-time'.
2020-03-06 18:42:36 +01:00
a125397a4b
gnu: mercurial: Update to 5.3.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 5.3.1.
[native-inputs]: Add WHICH.
2020-03-06 18:42:36 +01:00
87bf568022
Do not record store file name in cpp.scm.
...
* gnu/packages/cpp.scm (abseil-cpp): Replace full store file name with '...'
2020-03-06 08:24:45 -08:00
1ab58a3d90
gnu: carla: Fix start-up.
...
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942 >,
properly.
* gnu/packages/audio.scm (carla)[arguments]: Add ‘wrap-executables’ phase.
[inputs]: Add guile-2.2.
2020-03-06 16:29:16 +01:00
366c2c8f48
gnu: fmt: Fix home page.
...
* gnu/packages/pretty-print.scm (fmt)[home-page]: Update.
2020-03-06 16:23:49 +01:00
522ec708bc
gnu: Order module imports in (gnu packages audio).
...
* gnu/packages/audio.scm: Order module imports alphabetically.
2020-03-06 16:23:49 +01:00
5424e680b8
gnu: carla: Partially fix start-up.
...
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942 > but
carla still fails to start.
Reported by Nathan Dehnel <ncdehnel@gmail.com>.
* gnu/packages/audio.scm (carla)[arguments]: Add ‘make-carla-executable’ phase.
2020-03-06 15:02:33 +01:00
462ca0bbb7
gnu: dovecot: Update to 2.3.10.
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.10.
2020-03-06 13:01:29 +01:00
59d4c8c2bf
gnu: Add gnome-boxes.
...
* gnu/packages/gnome.scm (gnome-boxes): New variable.
2020-03-06 12:46:26 +01:00
852fa6050e
gnu: tracker-miners: Update to 2.3.2.
...
* gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
2020-03-06 12:46:26 +01:00
63db190a52
gnu: tracker: Update to 2.3.2.
...
* gnu/packages/gnome.scm (tracker): Update to 2.3.2.
[arguments]: Fix tests properly.
[native-inputs]: Remove unneeded native-inputs.
[inputs]: Remove unneeded inputs.
[description]: Replace unclear description with more down to earth use cases.
[license]: Replace lgpl2.0+ with bsd-3 to reflect update.
2020-03-06 12:46:26 +01:00
a9838ee00a
gnu: libvirt-glib: Update to 3.0.0.
...
* gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
2020-03-06 12:46:26 +01:00
7154f5ef4b
gnu: python-pygit2: Update to 1.1.0.
...
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX. Add PYTHON-CACHED-PROPERTY.
(python2-pygit2): Remove variable (Python 2 is no longer supported).
2020-03-06 12:31:08 +01:00
5358950259
gnu: gitg: Remove redundant input.
...
* gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
2020-03-06 12:31:07 +01:00
8c6aae4636
gnu: libgit2-glib: Adjust inputs.
...
* gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ...
[inputs]: ... here. Move LIBGIT2 ...
[propagated-inputs]: ... here. New field.
2020-03-06 12:31:07 +01:00
6448c2e156
gnu: libgit2-glib: Update to 0.99.0.1.
...
* gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1.
[native-inputs]: Remove INTLTOOL.
2020-03-06 12:31:07 +01:00
dd386dd74f
gnu: r-modeltools: Update to 0.2-23.
...
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
2020-03-06 12:15:51 +01:00
87aa4d6245
gnu: r-ggplot2: Update to 3.3.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0.
[propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add
r-glue and r-isoband.
2020-03-06 12:15:51 +01:00
bafedbc362
gnu: Add r-isoband.
...
* gnu/packages/cran.scm (r-isoband): New variable.
2020-03-06 12:15:51 +01:00
858d5d7037
gnu: r-bookdown: Update to 0.18.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.18.
2020-03-06 12:15:51 +01:00
099adcf81f
gnu: r-fs: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-fs): Update to 1.3.2.
2020-03-06 12:15:51 +01:00
36488596b4
gnu: r-flextable: Update to 0.5.9.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
2020-03-06 12:15:51 +01:00
be01767cb9
gnu: r-lava: Update to 1.6.7.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.7.
2020-03-06 12:15:50 +01:00
83a483aac7
gnu: Update python-scikit-learn to 0.22.1.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1;
Add python-joblib to native-inputs to run the test suite.
2020-03-06 10:45:51 +01:00
6d26ee3b67
gnu: Add soci.
...
* gnu/packages/databases.scm (soci): New variable.
2020-03-06 10:20:55 +01:00
8be782c713
gnu: fmt: Update to 6.1.2.
...
* gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
2020-03-06 10:15:19 +01:00
744f445c92
gnu: fmt: Use HTTPS and git-fetch.
...
* gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch.
[home-page]: Use HTTPS.
2020-03-06 10:15:19 +01:00
fecd32501f
gnu: python-aiohttp: Update to 3.6.2.
...
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
2020-03-06 09:16:48 +01:00
858e642e4c
gnu: python-scanpy: Update to 1.4.5.1.
...
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1.
[source]: Fetch from pypi.
[propagated-inputs]: Add python-legacy-api-wrap, python-packaging,
python-patsy, and python-umap-learn.
[native-inputs]: Add python-setuptools-scm.
2020-03-06 09:16:48 +01:00
053ab825be
gnu: Add python-legacy-api-wrap.
...
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
2020-03-06 09:16:48 +01:00
2ceff35f07
gnu: Add python-get-version.
...
* gnu/packages/python-xyz.scm (python-get-version): New variable.
2020-03-06 09:16:48 +01:00
cc2c2850ce
gnu: Add python-pytest-black.
...
* gnu/packages/python-xyz.scm (python-pytest-black): New variable.
2020-03-06 09:16:48 +01:00
5f603fab23
gnu: python-black: Update to 19.10b0.
...
* gnu/packages/python-xyz.scm (python-black): Update to 19.10b0.
[arguments]: Patch tests.
[propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast.
[native-inputs]: Add python-setuptools-scm.
2020-03-06 09:16:48 +01:00
c777ecb372
gnu: Add python-pathspec.
...
* gnu/packages/python-xyz.scm (python-pathspec): New variable.
2020-03-06 09:16:48 +01:00
538c1a024a
gnu: python-tables: Use later hdf5 version.
...
* gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with
hdf5-1.10.
2020-03-06 09:16:47 +01:00
70b74663b6
gnu: python-tables: Do not detect CPU features.
...
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase
"disable-tuning".
2020-03-06 09:16:47 +01:00
bc8b2ffdac
ci: Adjust 'channel-build-system' for when the source is a file name.
...
Fixes an evaluation error introduced in
dd1ee160be8ba4e211432c08e161c24901cd670e: when invoked via
'build-aux/cuirass/gnu-system.scm', SOURCE is a store file name, not a
<local-file> as it is when invoked via 'etc/system-tests.scm'.
* gnu/ci.scm (channel-build-system)[build]: Call 'lower-object' only
when SOURCE is not a string.
2020-03-05 23:40:24 +01:00
e666a92344
tests: install: Add %test-gui-installed-os-encrypted.
...
* gnu/tests/install.scm (%test-gui-installed-os-encrypted): New variable,
(guided-installation-test): set a swap-device only if there is no encryption.
2020-03-05 23:40:24 +01:00
64704be417
installer: Fix cow-store umount.
...
This fixes <https://bugs.gnu.org/39712 >.
The guix-daemon was preventing the cow-store umount, so restart it. Some
udevd workers, using cow-store files might also still be around, so have some
umount retries.
* gnu/installer/final.scm (kill-cow-users): New procedure,
(umount-cow-store): restart guix-daemon and kill all processes started from
within the cow-store before trying to umount the store overlay. Also try 5
times to umount the overlay in case it is still busy.
2020-03-05 23:40:24 +01:00
ccb1a8c437
tests: install: Add "gui-installed-os".
...
* gnu/installer/tests.scm: New file.
* gnu/local.mk (INSTALLER_MODULES): Add it.
* gnu/tests/install.scm (run-install): Add #:gui-test. Add (gnu
installer tests) to the marionette imported modules. Honor GUI-TEST.
Check whether SCRIPT is true.
(%root-password, %syslog-conf): New variable.
(operating-system-with-console-syslog, gui-test-program)
(guided-installation-test): New procedures.
(%extra-packages, installation-os-for-gui-tests)
(%test-gui-installed-os): New variable.
2020-03-05 23:40:23 +01:00
e458726ab4
installer: Honor /tmp/installer-system-init-options.
...
* gnu/installer/final.scm (install-system): Honor
"/tmp/installer-system-init-options".
2020-03-05 23:40:23 +01:00
Ricardo Wurmus
Christopher Baines
Jakub Kądziołka
Ludovic Courtès
Roel Janssen
Efraim Flashner
Vincent Legoll
Jack Hill
Brice Waegeneire
Hartmut Goebel
Martin Becze
Maxim Cournoyer
Leo Famulari
Lars-Dominik Braun
Nicolas Goaziou
Michael Rohleder
Robert Smith
Pierre Neidhardt
Tobias Geerinckx-Rice
Vagrant Cascadian
Kei Kebreau
Mark H Weaver
Marius Bakke
Mathieu Othacehe