cc16c576a5
gnu: dovecot: Support zstd compression.
...
* gnu/packages/mail.scm (dovecot)[inputs]: Add zstd:lib.
2020-08-21 05:17:22 +02:00
19ab580074
gnu: vim: Update to 8.2.1500.
...
* gnu/packages/vim.scm (vim): Update to 8.2.1500.
2020-08-21 02:25:05 +02:00
3e09a2be74
gnu: vim: Install man pages.
2020-08-21 02:25:04 +02:00
c5b20437ed
gnu: enchant: Depend on hunspell.
...
* gnu/packages/enchant.scm (enchant): Add hunspell as an input.
2020-08-21 01:42:43 +02:00
2a29f4767f
gnu: hunspell-dict-en: Install all affix files.
...
* gnu/packages/aspell.scm (aspell-word-list): Install affix files
corresponding to installed dictionary files.
2020-08-21 01:41:58 +02:00
1cc75fef12
gnu: libmhash: Fix use-after-free in tests.
...
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
2020-08-20 15:28:13 -05:00
c6443c2c8f
gnu: r-fourcseq: Update to 1.22.1.
...
* gnu/packages/cran.scm (r-fourcseq): Update to 1.22.1.
2020-08-20 21:25:34 +02:00
4e0acfe5e7
gnu: r-complexheatmap: Update to 2.4.3.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
2020-08-20 21:25:34 +02:00
e9d2cab0bf
gnu: r-gage: Update to 2.38.3.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3.
[propagated-inputs]: Add r-go-db.
2020-08-20 21:25:34 +02:00
9da4a25b33
gnu: r-annotationhub: Update to 2.20.2.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
2020-08-20 21:25:34 +02:00
67f8477fb5
gnu: r-delayedarray: Update to 0.14.1.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
2020-08-20 21:25:33 +02:00
b414add3d1
gnu: r-annotationdbi: Update to 1.50.3.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
2020-08-20 21:25:33 +02:00
e9128480d4
gnu: r-biocviews: Update to 1.56.2.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
2020-08-20 21:25:33 +02:00
b828c3ea90
gnu: r-biocset: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
2020-08-20 21:25:33 +02:00
a27a402eba
gnu: r-experimenthub: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
2020-08-20 21:25:33 +02:00
1bdc770dc6
gnu: r-variancepartition: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
2020-08-20 21:25:33 +02:00
1bf630660b
gnu: r-rsubread: Update to 2.2.6.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
2020-08-20 21:25:33 +02:00
a20538ab7e
gnu: r-rbowtie: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
2020-08-20 21:25:33 +02:00
4a504b80c2
gnu: r-biocfilecache: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
2020-08-20 21:25:33 +02:00
82cb9a99f8
gnu: r-rbowtie2: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
2020-08-20 21:25:33 +02:00
a8840a04d7
gnu: r-motifstack: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
2020-08-20 21:25:33 +02:00
69f3b27822
gnu: r-clusterprofiler: Update to 3.16.1.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
2020-08-20 21:25:33 +02:00
fc1c3c6f9f
gnu: r-gosemsim: Update to 2.14.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
2020-08-20 21:25:33 +02:00
0827e0be36
gnu: r-oligo: Update to 1.52.1.
...
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
2020-08-20 21:25:33 +02:00
1c43c6fa6b
gnu: r-oligoclasses: Update to 1.50.4.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
2020-08-20 21:25:29 +02:00
15593de33c
gnu: bind: Update to 9.16.6 [multiple CVE fixes].
...
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and
CVE-2020-8624.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
2020-08-20 21:17:06 +02:00
3f28ebd0ff
gnu: perl-catalyst-plugin-configloader: Update to 0.35.
...
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
2020-08-20 21:17:05 +02:00
a7841fc486
gnu: perl-catalyst-devel: Update to 1.41.
...
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
2020-08-20 21:17:04 +02:00
a5526c75b8
gnu: ne: Update to 3.3.0.
...
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
2020-08-20 21:17:04 +02:00
149d91814c
gnu: p11-kit: Update to 0.23.21.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
2020-08-20 21:17:03 +02:00
d7f578f8c2
gnu: r-pbapply: Update to 1.4-3.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
2020-08-20 19:32:24 +02:00
800d95fe73
gnu: r-chron: Update to 2.3-56.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-56.
2020-08-20 19:32:24 +02:00
5e1c17a750
gnu: r-dplyr: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.2.
2020-08-20 19:32:24 +02:00
bc438f5a8f
gnu: r-mgcv: Update to 1.8-32.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-32.
2020-08-20 19:32:24 +02:00
5eb753a276
gnu: r-mass: Update to 7.3-52.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-52.
2020-08-20 19:32:24 +02:00
4be3979e99
gnu: r-stanheaders: Update to 2.21.0-6.
...
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-6.
2020-08-20 19:32:24 +02:00
69939ce955
gnu: r-showtext: Update to 0.9.
...
* gnu/packages/cran.scm (r-showtext): Update to 0.9.
2020-08-20 19:32:24 +02:00
4dcbea180d
gnu: r-haplo-stats: Update to 1.8.2.
...
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.2.
[propagated-inputs]: Add r-arsenal.
2020-08-20 19:32:24 +02:00
c4a48418f7
gnu: r-emmeans: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.0.
2020-08-20 19:32:24 +02:00
88bf81c61b
gnu: r-abjutils: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-abjutils): Update to 0.3.1.
[propagated-inputs]: Remove r-devtools, r-furrr, r-future, r-glue, r-httr, r-progress, r-readr, r-scales, and r-tibble.
2020-08-20 19:32:24 +02:00
432c62787c
gnu: r-hdf5r: Update to 1.3.3.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.3.
2020-08-20 19:32:24 +02:00
74b438e563
gnu: r-hardyweinberg: Update to 1.6.6.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.6.
2020-08-20 19:32:24 +02:00
c764026c26
gnu: r-jomo: Update to 2.7-2.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.7-2.
2020-08-20 19:32:24 +02:00
4e6aa9aa6f
gnu: r-ape: Update to 5.4-1.
...
* gnu/packages/cran.scm (r-ape): Update to 5.4-1.
2020-08-20 19:32:24 +02:00
677e83a927
gnu: Add r-arsenal.
...
* gnu/packages/cran.scm (r-arsenal): New variable.
2020-08-20 19:32:23 +02:00
280455809d
gnu: python-fpylll: Update to 0.5.2.
...
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.2.
2020-08-20 19:27:10 +02:00
b9ef00258c
gnu: fplll: Update to 5.3.2.
...
* gnu/packages/algebra.scm (fplll): Update to 5.3.2.
2020-08-20 19:23:03 +02:00
d9461f688c
gnu: python-libtmux: Update to 0.8.3.
...
* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.3.
2020-08-20 18:40:45 +02:00
37e64053b3
gnu: vis: Run most tests.
...
* gnu/packages/text-editors.scm (vis)[arguments]: Add ‘unpack-test-suite’
and ‘set-up-tests’ phase. Run the tests after wrapping vis.
[native-inputs]: Add vis-test origin.
2020-08-20 18:40:44 +02:00
d198eca0b3
gnu: vis: Fetch sources from git.
...
* gnu/packages/text-editors.scm (vis)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2020-08-20 18:40:43 +02:00
Tobias Geerinckx-Rice
Jakub Kądziołka
Julien Lepiller
Eric Bavier
Ricardo Wurmus
Andreas Enge