cc8ddcb097
gnu: perl: Fix Module::Pluggable for symlink forests.
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* gnu/packages/patches/perl-module-pluggable-search.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2015-04-22 14:38:14 -05:00
d8d6d096be
gnu: tzdata: Update to 2015c.
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* gnu/packages/base.scm (tzdata): Update to 2015c.
2015-04-21 19:03:25 -04:00
6162b95d21
gnu: glibc: Add dependency on Gettext, to install the message catalogs.
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This fixes a bug whereby the libc.mo files were not installed, and thus
translations of libc's messages were not available.
* gnu/packages/commencement.scm (gettext-boot0): New variable.
(glibc-final)[native-inputs]: New field.
* gnu/packages/base.scm (glibc)[native-inputs]: Add GNU-GETTEXT.
2015-04-21 22:53:09 +02:00
ef593a103d
gnu: libltdl: Remove unneeded patch.
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* gnu/packages/autotools.scm (libltdl)[source]: Remove 'patches'.
2015-04-21 21:16:24 +02:00
4a2b74bf4c
gnu: ld-wrapper: Ignore the .so argument following '-dynamic-linker'.
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Reported at <http://bugs.gnu.org/20102 >.
* gnu/packages/ld-wrapper.in (library-files-linked): Rename 'path+files'
to 'path+files+args'. Thread the reverse list of previous arguments.
Add case for when the previous argument is "-dynamic-linker".
2015-04-21 21:14:28 +02:00
4267c637d6
gnu: ld-wrapper: Add debugging info.
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* gnu/packages/ld-wrapper.in (ld-wrapper): Add "libraries linked"
debugging statement.
2015-04-21 21:08:44 +02:00
cbbb11c8a0
gnu: Rename ld-wrapper2 to ld-wrapper.
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* gnu/packages/ld-wrapper2.in: Rename to...
* gnu/packages/ld-wrapper.in: ... this.
* gnu-system.am (MISC_DISTRO_FILES): Remove ld-wrapper2.in.
* gnu/packages/commencement.scm (fixed-ld-wrapper): Remove.
(gcc-toolchain): Restore pre-77db91ad inputs.
2015-04-21 21:07:11 +02:00
44fd6ef137
ui: Add 'symlink' replacement with better error reporting.
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* guix/ui.scm (symlink): New procedure.
2015-04-20 22:37:20 +02:00
3392ce5d60
system: Make /gnu/store a read-only bind mount by default.
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* gnu/system/file-systems.scm (%immutable-store): New variable.
(%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
2015-04-20 22:21:51 +02:00
b86fee7848
file-systems: Use a second 'mount' call for read-only bind mounts.
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* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
(mount-file-system): Add 'flags' local variable. When FLAGS has
MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
2015-04-20 22:16:13 +02:00
38cf2ba084
gnu: Remove all #:select from (gnu packages ...) modules.
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This works around Guile bug <http://bugs.gnu.org/15540 >.
Reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
instead.
2015-04-20 15:50:59 +02:00
f73286345e
gexp: Add printers for <gexp-input> and <gexp-output>.
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* guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures.
(<gexp-input>, <gexp-output>): Use them as printers.
2015-04-20 15:41:41 +02:00
c568191a93
profiles: Create a CA certificate bundle only when it would be non-empty.
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* guix/profiles.scm (ca-certificate-bundle): Create
$output/etc/ssl/certs if and only if CA-FILES is non-empty.
2015-04-20 15:41:41 +02:00
51c649992e
gnu: Add sra-tools.
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* gnu/packages/bioinformatics.scm (sra-tools): New variable.
2015-04-20 15:29:17 +02:00
75dd242480
gnu: Add NCBI VDB.
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* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
2015-04-20 15:29:17 +02:00
2651a5e695
gnu: Add NGS Java bindings.
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* gnu/packages/bioinformatics.scm (ngs-java): New variable.
2015-04-20 15:29:16 +02:00
282c5087b4
gnu: Add NGS SDK.
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* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
2015-04-20 15:28:58 +02:00
85c37e29a4
gnu: Add Biopython.
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* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
2015-04-20 15:23:23 +02:00
40b084a326
gnu: Adjust latest perl modules to new 'modify-phases' syntax.
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* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
Add missing quotes, as needed since commit f8503e2
2015-04-19 21:39:32 -05:00
61c21ad319
gnu: Add WebKitGTK+.
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* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-04-20 10:34:24 +08:00
97b05abe6d
gnu: Add JSON-Any.
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* gnu/packages/perl.scm (perl-json-any): New variable.
2015-04-19 19:48:52 -05:00
47945cf353
import: cpan: Fix license string for Artistic license.
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* guix/import/cpan.scm (string->license): Remove extraneous "_0"
suffix for Artistics licenses.
2015-04-19 19:48:52 -05:00
ae6904dc0b
gnu: nix: Propagate perl inputs.
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* gnu/packages/package-management.scm (nix)[inputs]: Move
perl-www-curl, perl-dbi, perl-dbd-sqlite to...
[propagated-inputs]: ...this new field
2015-04-19 19:48:52 -05:00
8ac84f230c
gnu: Add Sys-Hostname-Long.
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* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
2015-04-19 19:48:52 -05:00
10ef803e7d
gnu: Add Text-Table.
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* gnu/packages/perl.scm (perl-text-table): New variable.
2015-04-19 19:48:52 -05:00
7ae9557181
gnu: Add Text-Aligner.
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* gnu/packages/perl.scm (perl-text-aligner): New variable.
2015-04-19 19:48:52 -05:00
f21671f469
gnu: Add Set-Scalar.
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* gnu/packages/perl.scm (perl-set-scalar): New variable.
2015-04-19 19:48:52 -05:00
b4dcb026d6
gnu: Add SQL-SplitStatement.
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* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
2015-04-19 19:48:52 -05:00
718c89c1a1
gnu: Add SQL-Tokenizer.
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* gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
2015-04-19 19:48:52 -05:00
8ce2312875
gnu: Add Perl Readonly.
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* gnu/packages/perl.scm (perl-readonly): New variable.
2015-04-19 19:48:51 -05:00
38e62c81ee
gnu: Add Perl Net-Amazon-S3.
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* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-net-amazon-s3): New variable.
2015-04-19 19:48:51 -05:00
3dd6bee1f2
gnu: Add XML-LibXML.
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* gnu/packages/xml.scm (perl-xml-libxml): New variable.
2015-04-19 19:48:51 -05:00
18b8bbb304
gnu: Add XML-SAX;
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* gnu/packages/xml.scm (perl-xml-sax): New variable.
2015-04-19 19:48:51 -05:00
1ed6d5bc86
gnu: Add XML-SAX-Base.
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* gnu/packages/xml.scm (perl-xml-sax-base): New variable.
2015-04-19 19:48:51 -05:00
b715dbac7b
gnu: Add XML-NamespaceSupport.
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* gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
2015-04-19 19:48:51 -05:00
0955342bf7
gnu: Add Term-ProgressBar-Simple.
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* gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
2015-04-19 19:48:51 -05:00
0d54bd259c
gnu: Add Term-ProgressBar-Quiet.
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* gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
2015-04-19 19:48:51 -05:00
4dbac597eb
gnu: Add Test-MockObject.
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* gnu/packages/perl.scm (perl-test-mockobject): New variable.
2015-04-19 19:48:51 -05:00
7332618df3
gnu: Add UNIVERSAL-isa.
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* gnu/packages/perl.scm (perl-universal-isa): New variable.
2015-04-19 19:48:51 -05:00
f9671ab689
gnu: Add UNIVERSAL-can.
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* gnu/packages/perl.scm (perl-universal-can): New variable.
2015-04-19 19:48:51 -05:00
cc307bda85
gnu: Add Term-ProgressBar.
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* gnu/packages/perl.scm (perl-term-progressbar): New variable.
2015-04-19 19:48:51 -05:00
70fe0008f7
gnu: Add TermReadKey.
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* gnu/packages/perl.scm (perl-term-readkey): New variable.
2015-04-19 19:48:51 -05:00
cd718b8201
gnu: Add Class-MethodMaker.
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* gnu/packages/perl.scm (perl-class-methodmaker): New variable.
2015-04-19 19:48:51 -05:00
56da2a1abd
gnu: Add IO-Interactive.
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* gnu/packages/perl.scm (perl-io-interactive): New variable.
2015-04-19 19:48:51 -05:00
257fa40b23
gnu: Add Term-Encoding.
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* gnu/packages/perl.scm (perl-term-encoding): New variable.
2015-04-19 19:48:51 -05:00
d2401db9ff
gnu: Add MooseX-Types-DateTime-MoreCoercions.
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* gnu/packages/perl.scm (perl-moosex-types-datetime-morecoercions):
New variable.
2015-04-19 19:48:51 -05:00
4f43da182b
gnu: Add Time-Duration-Parse.
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* gnu/packages/perl.scm (perl-time-duration-parse): New variable.
2015-04-19 19:48:50 -05:00
a15145d93b
gnu: Add Time-Duration.
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* gnu/packages/perl.scm (perl-time-duration): New variable.
2015-04-19 19:48:50 -05:00
bbe81cc0dd
gnu: Add Test-Pod-Coverage.
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* gnu/packages/perl.scm (perl-test-pod-coverage): New variable.
2015-04-19 19:48:50 -05:00
29fda459a6
gnu: Add Pod-Coverage.
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* gnu/packages/perl.scm (perl-pod-coverage): New variable.
2015-04-19 19:48:50 -05:00
Eric Bavier
Mark H Weaver
Ludovic Courtès
Ricardo Wurmus
宋文武