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Author SHA1 Message Date
Ricardo Wurmus
2f0f6284d1
gnu: r-adimpute: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0.

Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
fc9baf4ad2
gnu: r-adamgui: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0.

Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2662a6af48
gnu: r-adam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0.

Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
de5c088e06
gnu: r-adacgh2: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0.

Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
7e7d075194
gnu: r-absseq: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0.

Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
d08d58d828
gnu: r-abarray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0.

Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6ea450f390
gnu: r-debcam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0.
[arguments]: Remove old comment and enable tests.
[inputs]: Replace icedtea with openjdk11.

Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
bcf0ecd1ec
gnu: Add r-hpo-db. 
* gnu/packages/bioconductor.scm (r-hpo-db): New variable.

Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6304d3cce6
gnu: Add r-mpo-db. 
* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4f85beac2d
gnu: Add r-msexperiment. 
* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
bbe7ea0d27
gnu: Add r-sparsearray. 
* gnu/packages/bioconductor.scm (r-sparsearray): New variable.

Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
f80de2f03f
gnu: Add r-metabocoreutils. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable.

Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
221b9422fc
gnu: r-abn: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.2.

Change-Id: Icf3de104b61e79b9a7c9fbfecb0e071d6e46ef9d
 2023-10-31 21:57:58 +01:00
Mădălin Ionel Patrașcu
a0a377fdd6
gnu: Add r-radiogx. 
* gnu/packages/bioconductor.scm (r-radiogx): New variable.

Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
7170720e48
gnu: Add r-coregx. 
* gnu/packages/bioconductor.scm (r-coregx): New variable.

Change-Id: Ib54ba3c7bebdcc90748d4e4b0b2ce63b7f0fc1b8
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
e8cd556a7c
gnu: Add r-piano. 
* gnu/packages/bioconductor.scm (r-piano): New variable.

Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
192514e869
gnu: Add r-r4rna. 
* gnu/packages/bioconductor.scm (r-r4rna): New variable.

Change-Id: I1bde2a17b0ba4a97fa54161744f048dbfaf2217a
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
d24c1078d2
gnu: Add r-r3cseq. 
* gnu/packages/bioconductor.scm (r-r3cseq): New variable.

Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
 2023-10-31 13:58:08 +01:00
Ricardo Wurmus
04cef141c4
gnu: r-metap: Update to 1.9. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.9.

Change-Id: I60ad521bf4a02505f5bafd3c3b0641395a15c308
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
5326f0c76e
gnu: r-biomartr: Update to 1.0.6. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.6.

Change-Id: Ifdbc61ef9b34aee441524ea15f0b5a7dfdd76052
 2023-10-25 16:58:40 +02:00
Afkhami, Navid
21b44bbc7c
gnu: Add r-mafh5-gnomad-v3-1-2-grch38. 
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-13 14:42:16 +02:00
Ricardo Wurmus
b4f2b681ad
gnu: Add r-chemmineob. 
* gnu/packages/bioconductor.scm (r-chemmineob): New variable.
 2023-10-11 15:44:06 +02:00
Ricardo Wurmus
591ffaede3
gnu: r-abn: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.1.
 2023-10-09 22:44:47 +02:00
Ricardo Wurmus
e97e708958
gnu: r-biomvrcns: Patch R constants. 
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase
'patch-constants.
 2023-10-06 08:55:11 +02:00
Ricardo Wurmus
c64777cfe0
gnu: r-activepathways: Update to 2.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.2.
 2023-10-05 15:16:26 +02:00
Ricardo Wurmus
f1259b80be
gnu: r-valr: Update to 0.7.0. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.7.0.
[propagated-inputs]: Add r-lifecycle.
 2023-10-05 15:16:26 +02:00
Ricardo Wurmus
8c22cc96f0
gnu: r-biomartr: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.5.
 2023-10-05 15:16:26 +02:00
Ricardo Wurmus
d841c23dc5
gnu: r-tximeta: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.3.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b53f7a87b2
gnu: r-biodb: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.1.
[propagated-inputs]: Add r-git2r.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
bf7c049147
gnu: r-gviz: Update to 1.44.2. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.2.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
9220702479
gnu: r-s4vectors: Update to 0.38.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.2.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
6492c6496b
gnu: r-biocstyle: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.1.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
27fd2d2c2a
gnu: r-yapsa: Update to 1.26.8. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.26.8.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
6a1b46e7ab
gnu: r-enrichplot: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.3.
[propagated-inputs]: Add r-ggfun.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
3f3c986001
gnu: r-spectra: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.3.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b82dc9b724
gnu: r-keggrest: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.1.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
b56dabc7a3
gnu: r-genomeinfodb: Update to 1.36.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.4.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
28b2b7c367
gnu: r-ensembldb: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.1.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
fefad76048
gnu: r-ancombc: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.2.
 2023-10-05 10:23:27 +02:00
Ricardo Wurmus
caf9f847ef
gnu: r-omnipathr: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.2.
 2023-10-05 10:23:27 +02:00
Mădălin Ionel Patrașcu
273ee56bc2
gnu: Add r-arrayquality. 
* gnu/packages/bioconductor.scm (r-arrayquality): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
4edacf416b
gnu: Add r-arraymvout. 
* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
4221c3d4da
gnu: Add r-parody. 
* gnu/packages/bioconductor.scm (r-parody): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
b84f6c2c0e
gnu: Add r-mdqc. 
* gnu/packages/bioconductor.scm (r-mdqc): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
9f08080b38
gnu: Add r-apcomplex. 
* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
e65ba1ccee
gnu: Add r-org-sc-sgd-db. 
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
1025316d80
gnu: Add r-hybridmtest. 
* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
 2023-10-04 11:03:23 +02:00
Mădălin Ionel Patrașcu
58a3333f58
gnu: Add r-anota2seq. 
* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
 2023-10-04 11:03:23 +02:00
Ricardo Wurmus
cf5cb0875b
gnu: r-delayedmatrixstats: Update to 1.22.6. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.6.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
c8e7ea8a8b
gnu: r-rhdf5lib: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.1.
 2023-09-14 08:57:24 +02:00