17235ec28c
gnu: r-nmf: Move from "annotation" to "package" section.
...
* gnu/packages/bioconductor.scm (r-nmf): Move variable.
2020-12-17 11:41:15 +01:00
eb3c105126
gnu: r-deconstructsigs: Move from "annotation" to "package" section.
...
* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
2020-12-17 11:40:31 +01:00
e7fa79fd91
gnu: r-pasilla: Move from "annotation" to "experiment" section.
...
* gnu/packages/bioconductor.scm (r-pasilla): Move variable.
2020-12-17 11:39:51 +01:00
cc54848ad0
gnu: r-ideoviz: Move from "annotation" to "package" section.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Move variable.
2020-12-17 11:39:06 +01:00
e5610fd9f4
gnu: r-genelendatabase: Move from "annotation" to "experiment" section.
...
* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
2020-12-17 11:38:24 +01:00
30a4bd3bb3
gnu: r-bluster: Move from "annotation" to "package" section.
...
* gnu/packages/bioconductor.scm (r-bluster): Move variable.
2020-12-17 11:37:47 +01:00
1abb6a2a78
gnu: r-cummerbund: Move from "experiment" to "package" section.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
2020-12-17 11:37:17 +01:00
17d95689b4
gnu: r-coverageview: Move from "experiment" to "package" section.
...
* gnu/packages/bioconductor.scm (r-coverageview): Move variable.
2020-12-17 11:36:26 +01:00
04a0594662
gnu: Add r-org-eck12-eg-db.
...
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
e4b0794e52
gnu: Add r-pathview.
...
* gnu/packages/bioconductor.scm (r-pathview): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
7395458d40
gnu: Add r-kegggraph.
...
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
2020-12-17 11:26:53 +01:00
eb2f1a7dd9
gnu: Add r-gagedata.
...
* gnu/packages/bioconductor.scm (r-gagedata): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
3872153a2f
gnu: r-scuttle: Update to 1.0.3.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
2020-12-09 23:30:12 +01:00
eed728951c
gnu: r-beachmat: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
2020-12-09 23:30:12 +01:00
589ac42212
gnu: r-cicero: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
2020-12-09 23:30:12 +01:00
7cda2d415f
gnu: r-biosigner: Update to 1.18.2.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
2020-12-09 23:30:12 +01:00
4714787793
gnu: r-biocneighbors: Update to 1.8.2.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
2020-12-09 23:30:12 +01:00
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09 12:12:48 +01:00
4617cc7fd5
gnu: r-rhtslib: Propagate zlib.
...
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09 12:12:48 +01:00
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:48 +01:00
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09 12:12:48 +01:00
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09 12:12:47 +01:00
8db36c1f68
gnu: r-yarn: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09 12:12:47 +01:00
adf6edc750
gnu: r-quantro: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09 12:12:47 +01:00
4eeaa159d2
gnu: r-lumi: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09 12:12:47 +01:00
0b7dd44706
gnu: r-methylumi: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09 12:12:47 +01:00
e5a4198bc3
gnu: r-minfi: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09 12:12:47 +01:00
45dfb75166
gnu: Add r-catalyst.
...
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09 12:12:47 +01:00
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
0e60dda0ae
gnu: Add r-scuttle.
...
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09 12:12:46 +01:00
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09 12:12:46 +01:00
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09 12:12:46 +01:00
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09 12:12:46 +01:00
798ec28916
gnu: r-biocsingular: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09 12:12:46 +01:00
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
...
* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
16f16b5e21
gnu: Add r-msmstests.
...
* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09 12:12:43 +01:00
e520c68fa9
gnu: Add r-msmseda.
...
* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09 12:12:43 +01:00
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
Ricardo Wurmus
Mădălin Ionel Patrașcu
zimoun
Roel Janssen