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94462 Commits (d6b9a3faa8d470af6dada3e052a12bba6c32fc22)

Author SHA1 Message Date
Efraim Flashner fe98984880
gnu: Add rust-version-sync-0.9.
* gnu/packages/crates-io.scm (rust-version-sync-0.9): New variable.
(rust-version-sync-0.8): Inherit from rust-version-sync-0.9.
2022-04-03 14:07:45 +03:00
Efraim Flashner cf9a58bd18
gnu: rust-os-pipe-0.9: Don't skip build.
* gnu/packages/crates-io.scm (rust-os-pipe-0.9)[arguments]: Inherit from
rust-os-pipe-1.
2022-04-03 14:07:45 +03:00
Efraim Flashner f90052a87b
gnu: Add rust-os-pipe-1.
* gnu/packages/crates-io.scm (rust-os-pipe-1): New variable.
(rust-os-pipe-0.9): Inherit from rust-os-pipe-1.
2022-04-03 14:07:45 +03:00
Efraim Flashner c4031f909f
gnu: Add rust-kstring-1.
* gnu/packages/crates-io.scm (rust-kstring-1): New variable.
2022-04-03 14:07:44 +03:00
Efraim Flashner a834083441
gnu: Add rust-document-features-0.2.
* gnu/packages/crates-io.scm (rust-document-features-0.2): New variable.
2022-04-03 14:07:41 +03:00
Jonathan Brielmaier 3471b8fae2
gnu: radicale: Update to 3.1.5.
* gnu/packages/dav.scm (radicale): Update to 3.1.5.
[source]: tags have a leading "v" now.
[arguments]: disable tests temporarily.

Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2022-04-03 12:49:07 +02:00
Felix Gruber a37a8a23bd
gnu: oil: Update to 0.9.9.
* gnu/packages/shells.scm (oil): Update to 0.9.9.
  [source]: Add comment on embedded CPython like Ludo’ proposed in
  https://issues.guix.gnu.org/53642#3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brian Kubisiak 032f2e261c
home: services: zsh: Fix zshenv creation.
Fixes a regression introduced by
4935501fd9 that would skip generating
the user's ~/.config/zsh/.zshenv unless both of zshenv and
environment-variables are set in the configuration.

* gnu/home/services/shells.scm (zsh-get-configuration-files):
Generate ~/.config/zsh/.zshenv when only one of zshenv or
environment-variables is specified.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 9535b62170
gnu: mate-polkit: Improve synopsis.
* gnu/packages/mate.scm (mate-polkit): Improve synopsis.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 92b32a0592
gnu: xfce: Add notification support
* gnu/packages/xfce.scm (xfce)[inputs]: Add XFCE4-NOTIFYD.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley c315fb0cac
gnu: xfce: Remove input labels.
(xfconf, libxfce4ui, xfce4-panel, xfce4-whiskermenu-plugin, xfce,
xfce4-screensaver): Remove input labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 847a6f7c23
gnu: xfce4-screenshooter: Update to 1.9.10.
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.9.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:17 +02:00
Brendan Tildesley 47d4b6ece4
gnu: xfce4-whiskermenu-plugin: Update to 2.6.2.
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:17 +02:00
Vagrant Cascadian 7902d17bc8
gnu: cpufrequtils: Update to 008-1.a2f0c39.
Fixes build failure on non-x86 architectures, and brings cpufrequtils to the
state of the art from 2011.

* gnu/packages/linux.scm (cpufrequtils)[version]: Use git-version.
  [source]: Use git-fetch.
2022-04-02 19:13:21 -07:00
Julien Lepiller 8a208df17f
nls: Update translations.
* po/packages/fi.po: New file.
* po/packages/LINGUAS: Add it.
2022-04-02 18:42:36 +02:00
Julien Lepiller 93bfd4d9c7
nls: Enforce translation thresholds.
* po/doc/guix-cookbook.es.po: Remove file.
* po/doc/guix-cookbook.fa.po: Remove file.
* po/doc/guix-cookbook.fi.po: Remove file.
* po/doc/guix-cookbook.pt_BR.po: Remove file.
* po/doc/guix-cookbook.ru.po: Remove file.
* po/doc/guix-cookbook.uk.po: Remove file.
* po/doc/guix-cookbook.zh_Hans.po: Remove file.
* po/doc/guix-manual.fa.po: Remove file.
* po/doc/guix-manual.fi.po: Remove file.
* po/doc/guix-manual.it.po: Remove file.
* po/doc/guix-manual.ko.po: Remove file.
* po/doc/guix-manual.sk.po: Remove file.
* po/doc/local.mk: Remove them.
* doc/local.mk: Remove them.
2022-04-02 18:14:43 +02:00
Julien Lepiller ff194cb245
maint: Implement translation thresholds.
Do not download new translations for the cookbook and the manual when
they are below 10% completion, and remove existing translations when
they fall below 5%.

* Makefile.am (download-po): Implement translation thresholds.
2022-04-02 18:14:34 +02:00
Julien Lepiller 6386c011b2
doc: Document inclusion requirements for new translations.
* doc/contributing.texi (Translating Guix)[Conditions for Inclusion]:
New section.
2022-04-02 18:12:48 +02:00
jgart 49d0a80738
gnu: cl-dbi: Update to 0.9.5-2.738a74d.
* gnu/packages/lisp-xyz.scm (sbcl-dbi): Update to 0.9.5-2.738a74d.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-02 16:36:49 +02:00
Chadwain Holness a27cef76c2
gnu: python-pycountry: Update to 22.3.5.
* gnu/packages/python-xyz.scm (python-pycountry): Update to 22.3.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-01 18:01:07 +02:00
Tanguy Le Carrour 8f5043bbc6
gnu: gnunet: Update to 0.16.3.
* gnu/packages/gnunet.scm (gnunet): Update to 0.16.3.
[arguments]: Enable all the tests that were disabled.
[inputs]: Use new style. [native-inputs]: Add openssl.
[home-page]: Update URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-01 18:01:07 +02:00
Ludovic Courtès 6d54f1987f
gnu: vtk: Remove input labels.
* gnu/packages/image-processing.scm (vtk)[inputs]: Remove labels.
2022-04-01 18:01:07 +02:00
Ludovic Courtès c3a20d91f9
gnu: vtk@6: Depend on Python 2.x, not 3.x.
* gnu/packages/image-processing.scm (vtk-6)[native-inputs]: Replace
PYTHON with PYTHON-2.
2022-04-01 18:01:06 +02:00
Ludovic Courtès 2a363bb5d3
weather: Colorize the output.
* guix/colors.scm (coloring-procedure): Export.
* guix/scripts/weather.scm (report-server-coverage): Highlight the
server name and colorize the availability ratio.
2022-04-01 18:01:06 +02:00
Ludovic Courtès c1093dc7a6
gnu: libtool: Add 2.4.7.
* gnu/packages/autotools.scm (libtool-2.4.7): New variable.
2022-04-01 18:01:06 +02:00
Ludovic Courtès 0fffcfa41d
gnu: libressl: Add 'release-monitoring-url' property.
* gnu/packages/tls.scm (libressl)[properties]: New field.
2022-04-01 18:01:06 +02:00
jgart b724c847a2
gnu: cl-usocket: Update to 0.8.4.
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.4.
  [inputs]: Use new style.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-01 13:33:56 +02:00
Sébastien Lerique fc94e93c4b
gnu: libfido2: Fix cross-compilation.
* gnu/packages/security-token.scm (libfido2)[arguments]: Set the
PKG_CONFIG_EXECUTABLE variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:57:05 +03:00
Sébastien Lerique 89f3275ff5
gnu: libfido2: Use new style for inputs.
* gnu/packages/security-token.scm (libfido2)[inputs]: Use new style.
Sort alphabetically.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:40:08 +03:00
Raphaël Mélotte via Guix-patches 4cfc1c433d
gnu: tio: Update to 1.36.
* gnu/packages/terminals.scm (tio): Update to 1.36.
[native-inputs]: Add pkg-config.
[inputs]: Add libinih.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:25:31 +03:00
Christian Gelinek 9f82d1f1c0
gnu: iverilog: Add zlib dependency for LXT dump file format support.
* gnu/packages/fpga.scm (iverilog)[native-inputs]: Add zlib.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:22:58 +03:00
cage 58874999c9
gnu: gmid: Update to 1.8.3.
* gnu/packages/web.scm (gmid): Update to 1.8.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:19:19 +03:00
Collin J. Doering c5ffc9b65d
gnu: plantuml: Update to 1.2022.3.
* gnu/packages/uml.scm (plantuml): Update to 1.2022.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 17:52:19 +03:00
Ricardo Wurmus 05e68f31ba
gnu: python-velocyto: Set cache directory for Numba.
* gnu/packages/bioinformatics.scm (python-velocyto)[arguments]: Add phase
'set-numba-cache-dir.
2022-03-31 16:02:21 +02:00
Efraim Flashner 8f3dc994bb
gnu: wfmash: Enable test suite.
* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Don't disable
tests. Add custom 'check phase based on upstream's own CI tests.
[native-inputs]: Add samtools.
2022-03-31 16:29:34 +03:00
Arun Isaac 1ca9d9e194
gnu: Add wfmash.
* gnu/packages/bioinformatics.scm (wfmash): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:53 +03:00
Arun Isaac 8524904e08
gnu: atomic-queue: Do not look for boost when cross-compiling.
* gnu/packages/cpp.scm (atomic-queue)[arguments]: When cross-compiling, add a
do-not-check-for-boost phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:53 +03:00
Arun Isaac a83918837e
gnu: atomic-queue: Run tests correctly.
* gnu/packages/cpp.scm (atomic-queue)[arguments]: In the check phase, run
tests instead of returning a function to run them.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Arun Isaac 7d331dd203
gnu: htslib: Add bzip2 and xz to inputs.
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.

* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Arun Isaac 973ee1c91d
gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux.
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Ricardo Wurmus a69a44bf59
gnu: python-loompy: Update to 3.0.7.
* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.7.
[arguments]: Add build phases 'fix-h5py-error and 'set-numba-cache-dir;
respect TESTS? argument in 'check phase.
[propagated-inputs]: Add python-click, python-numba, and
python-numpy-groupies.
2022-03-31 14:37:58 +02:00
Ricardo Wurmus 38b2026515
gnu: Add python-numpy-groupies.
* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
2022-03-31 14:37:58 +02:00
Arun Isaac 668d52a815
gnu: Add riscv-pk.
* gnu/packages/virtualization.scm (riscv-pk): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 15:20:11 +03:00
Arun Isaac 9afad0c16e
gnu: spike: Substitute path to dtc instead of wrapping executables.
* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary
phase. Add a configure-dtc-path phase that substitutes the absolute path to
dtc.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 15:20:08 +03:00
Ricardo Wurmus dda555fead
gnu: python-anndata: Update to 0.8.0.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.8.0.
[arguments]: Remove build phase 'relax-dependency-requirements.
2022-03-31 10:36:31 +02:00
Ricardo Wurmus ea403bf290
gnu: python-h5py: Update to 3.6.0.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
2022-03-31 10:36:31 +02:00
Ricardo Wurmus 967d5fd5c2
gnu: python2-h5py: Detach version and source from python-h5py.
* gnu/packages/python-xyz.scm (python2-h5py): Override source and version
field.
(python-h5py)[properties]: Record python2-variant.
2022-03-31 10:36:31 +02:00
Efraim Flashner ecb2603046
gnu: weechat: Update to 3.5.
* gnu/packages/irc.scm (weechat): Update to 3.5.
[inputs]: Add zstd:lib.
2022-03-30 20:52:14 +03:00
Efraim Flashner cb00a5fd85
gnu: msmtp: Update to 1.8.20.
* gnu/packages/mail.scm (msmtp): Update to 1.8.20.
2022-03-30 20:24:55 +03:00
Efraim Flashner 96a1d6b7a0
gnu: ncdu-2: Update to 2.1.1.
* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.1.
2022-03-30 19:58:29 +03:00