Mădălin Ionel Patrașcu
5d58d20684
gnu: Add r-macrophage.
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X-Debbugs-Cc: rekado@elephly.net
* gnu/packages/bioconductor.scm (r-macrophage): New variable.
2022-10-15 21:07:24 +02:00
Ricardo Wurmus
e069c6df5e
gnu: Add r-dada2.
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* gnu/packages/bioconductor.scm (r-dada2): New variable.
2022-10-06 12:38:34 +02:00
Ricardo Wurmus
17134b9ec1
gnu: r-tximeta: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
94693d1980
gnu: r-bionero: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
202fd44ca0
gnu: r-biodb: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
6bf59194a6
gnu: r-basilisk: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2.
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* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
869b1f9f5c
gnu: r-pathview: Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03 19:08:09 +02:00
Ricardo Wurmus
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
cc719399c9
gnu: r-scran: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1527d2e9df
gnu: r-scuttle: Update to 1.6.3.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
d66a466909
gnu: r-hdf5array: Update to 1.24.2.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
9af834ad37
gnu: r-biocviews: Update to 1.64.1.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
10c006c21d
gnu: r-opencyto: Update to 2.8.4.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
bceed10243
gnu: r-flowstats: Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
eed76ad91a
gnu: r-flowviz: Update to 1.60.2.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
f82d20caae
gnu: r-ggcyto: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus
23e42e77d4
gnu: r-rsubread: Update to 2.10.5.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
597106f234
gnu: r-rgadem: Update to 2.44.1.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
842431a036
gnu: r-dose: Update to 3.22.1.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1.
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* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
1cb30ba714
gnu: r-ggtree: Update to 3.4.4.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
a047448aad
gnu: r-treeio: Update to 1.20.2.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
e581479be8
gnu: r-diffbind: Update to 3.6.4.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
309cfcedca
gnu: r-zellkonverter: Update to 1.6.5.
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* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
039d894b9d
gnu: r-limma: Update to 3.52.4.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus
a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
ba6a3e7d39
gnu: r-gage: Update to 2.46.1.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
c82320aa21
gnu: r-complexheatmap: Update to 2.12.1.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
15243c2f84
gnu: r-biostrings: Update to 2.64.1.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
29a947216c
gnu: r-annotationforge: Update to 1.38.1.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus
96b560ac8b
gnu: r-dearseq: Update to 1.8.4.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-10-03 19:08:03 +02:00
Ricardo Wurmus
93328f8b89
gnu: r-activedriverwgs: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus
8f3787576c
gnu: r-htscluster: Update to 2.0.10.
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* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus
b1dd1f221f
gnu: r-perfmeas: Update to 1.2.5.
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* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus
9c91113ee7
gnu: r-valr: Update to 0.6.5.
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* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus
47fb9d23ea
gnu: Add r-omicade4.
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* gnu/packages/bioconductor.scm (r-omicade4): New variable.
2022-09-15 15:22:11 +02:00
Ricardo Wurmus
d3f3968e65
gnu: Add r-made4.
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* gnu/packages/bioconductor.scm (r-made4): New variable.
2022-09-15 15:22:11 +02:00
Christopher Baines
ad1d3f98b1
gnu: Add comments to the bottom of a few package modules.
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This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.
If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.
* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
2022-09-10 10:45:27 +01:00
Efraim Flashner
9fa3e90789
gnu: r-edger: Update to 3.38.4.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.4.
[propagated-inputs]: Remove r-statmod.
2022-09-06 08:42:20 +03:00
Efraim Flashner
9626ca8126
gnu: r-genomicalignments: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.1.
2022-09-05 22:58:12 +03:00
