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65558 Commits (d8e83969a9f87a2dffc3659cb1805b30ac7f92f1)

Author SHA1 Message Date
Brendan Tildesley d8e83969a9
gnu: piper: Update to 0.5.1. Disable broken tests. 
* gnu/packages/gnome.scm (piper): Update to 0.5.1. Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-08-22 14:06:07 -04:00
Brendan Tildesley 3403679276
gnu: libratbag: Update to 0.14. 
* gnu/packages/gnome.scm (libratbag): Update to 0.14.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-08-22 14:06:07 -04:00
Paul Garlick 40fc8992db
gnu: Add fullswof-2d. 
* gnu/packages/simulation.scm (fullswof-2d): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-08-22 13:57:35 -04:00
Vinicius Monego b6568c3526
gnu: Add rtaudio. 
* gnu/packages/audio.scm (rtaudio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-08-22 13:39:28 -04:00
Hendursaga 2183887ba9
gnu: Add dosage. 
* gnu/packages/python-xyz.scm (dosage): New variable.
 2020-08-22 13:13:59 -04:00
Martin Becze 7a3af1ae88
gnu: Add nicotine. 
* gnu/packages/nicotine.scm (nicotine): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-08-22 12:50:55 -04:00
Oleg Pykhalov 4536c5a0a3
gnu: emacs-epkg: Update to 3.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.2.2.
 2020-08-22 15:52:49 +03:00
Michael Rohleder b7e76699d2
gnu: jekyll: Loosen the requirement for kramdown. 
* gnu/packages/ruby.scm (jekyll): Loosen the requirement for kramdown.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-22 13:22:16 +02:00
Mark H Weaver dad963a439
gnu: isc-dhcp: Update bundled BIND to 9.11.22 [security fixes]. 
Includes fixes for CVE-2020-8617, CVE-2020-8619, CVE-2020-8622,
CVE-2020-8623, and CVE-2020-8624.

* gnu/packages/admin.scm (isc-dhcp): Update bundled BIND to 9.11.22.
 2020-08-21 21:55:24 -04:00
Mark H Weaver 1bdc6f127f
gnu: linux-libre@4.9: Update to 4.9.233. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.233.
(linux-libre-4.9-pristine-source): Update hash.
(deblob-scripts-4.9): Update to 4.9.232.
 2020-08-21 21:45:50 -04:00
Mark H Weaver 1413074d94
gnu: linux-libre@4.4: Update to 4.4.233. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.233.
(linux-libre-4.4-pristine-source): Update hash.
(deblob-scripts-4.4): Update to 4.4.232.
 2020-08-21 21:44:24 -04:00
Mark H Weaver e292224da6
gnu: linux-libre: Update to 5.8.3. 
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.3.
(linux-libre-5.8-pristine-source): Update hash.
 2020-08-21 21:01:17 -04:00
Mark H Weaver f54f3a8c24
gnu: linux-libre@5.7: Update to 5.7.17. 
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.17.
(linux-libre-5.7-pristine-source): Update hash.
 2020-08-21 21:00:39 -04:00
Mark H Weaver 518d06d132
gnu: linux-libre@5.4: Update to 5.4.60. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.60.
(linux-libre-5.4-pristine-source): Update hash.
 2020-08-21 20:59:52 -04:00
Mark H Weaver 10df5c487b
gnu: linux-libre@4.19: Update to 4.19.141. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.141.
(linux-libre-4.19-pristine-source): Update hash.
 2020-08-21 20:58:49 -04:00
Mark H Weaver c6f92ba5e0
gnu: linux-libre@4.14: Update to 4.14.194. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.194.
(linux-libre-4.14-pristine-source): Update hash.
 2020-08-21 20:56:13 -04:00
Leo Famulari 7bb0527cef
gnu: linux-libre: Update to 5.8.2. 
* gnu/packages/aux-files/linux-libre/5.8-arm.conf,
gnu/packages/aux-files/linux-libre/5.8-arm64.conf,
gnu/packages/aux-files/linux-libre/5.8-i686.conf,
gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
* gnu/packages/linux.scm (linux-libre-5.8): New variable.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Point to linux-libre-5.8*.
 2020-08-21 17:59:42 -04:00
Leo Famulari 1bc275034f
gnu: Use a descriptive file-name for linux-libre deblobbing scripts. 
Fixes <https://bugs.gnu.org/42789>.

* gnu/packages/linux.scm (linux-libre-deblob-scripts): Set the file-name of the
deblob and deblob-check scripts.
 2020-08-21 17:59:38 -04:00
Prafulla Giri c02398edf4
gnu: Add ronn-ng 
* gnu/packages/groff.scm (ronn-ng): New public variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2020-08-21 14:33:17 +02:00
Tobias Geerinckx-Rice cc16c576a5
gnu: dovecot: Support zstd compression. 
* gnu/packages/mail.scm (dovecot)[inputs]: Add zstd:lib.
 2020-08-21 05:17:22 +02:00
Jakub Kądziołka 19ab580074
gnu: vim: Update to 8.2.1500. 
* gnu/packages/vim.scm (vim): Update to 8.2.1500.
 2020-08-21 02:25:05 +02:00
Jakub Kądziołka 3e09a2be74
gnu: vim: Install man pages. 2020-08-21 02:25:04 +02:00
Julien Lepiller c5b20437ed
gnu: enchant: Depend on hunspell. 
* gnu/packages/enchant.scm (enchant): Add hunspell as an input.
 2020-08-21 01:42:43 +02:00
Julien Lepiller 2a29f4767f
gnu: hunspell-dict-en: Install all affix files. 
* gnu/packages/aspell.scm (aspell-word-list): Install affix files
corresponding to installed dictionary files.
 2020-08-21 01:41:58 +02:00
Eric Bavier 1cc75fef12
gnu: libmhash: Fix use-after-free in tests. 
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
 2020-08-20 15:28:13 -05:00
Ricardo Wurmus c6443c2c8f
gnu: r-fourcseq: Update to 1.22.1. 
* gnu/packages/cran.scm (r-fourcseq): Update to 1.22.1.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus 4e0acfe5e7
gnu: r-complexheatmap: Update to 2.4.3. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus e9d2cab0bf
gnu: r-gage: Update to 2.38.3. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3.
[propagated-inputs]: Add r-go-db.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus 9da4a25b33
gnu: r-annotationhub: Update to 2.20.2. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus 67f8477fb5
gnu: r-delayedarray: Update to 0.14.1. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus b414add3d1
gnu: r-annotationdbi: Update to 1.50.3. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus e9128480d4
gnu: r-biocviews: Update to 1.56.2. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus b828c3ea90
gnu: r-biocset: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a27a402eba
gnu: r-experimenthub: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bdc770dc6
gnu: r-variancepartition: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bf630660b
gnu: r-rsubread: Update to 2.2.6. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a20538ab7e
gnu: r-rbowtie: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 4a504b80c2
gnu: r-biocfilecache: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 82cb9a99f8
gnu: r-rbowtie2: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a8840a04d7
gnu: r-motifstack: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 69f3b27822
gnu: r-clusterprofiler: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus fc1c3c6f9f
gnu: r-gosemsim: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 0827e0be36
gnu: r-oligo: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1c43c6fa6b
gnu: r-oligoclasses: Update to 1.50.4. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
 2020-08-20 21:25:29 +02:00
Tobias Geerinckx-Rice 15593de33c
gnu: bind: Update to 9.16.6 [multiple CVE fixes]. 
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and
CVE-2020-8624.

* gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
 2020-08-20 21:17:06 +02:00
Tobias Geerinckx-Rice 3f28ebd0ff
gnu: perl-catalyst-plugin-configloader: Update to 0.35. 
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
 2020-08-20 21:17:05 +02:00
Tobias Geerinckx-Rice a7841fc486
gnu: perl-catalyst-devel: Update to 1.41. 
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice a5526c75b8
gnu: ne: Update to 3.3.0. 
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice 149d91814c
gnu: p11-kit: Update to 0.23.21. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
 2020-08-20 21:17:03 +02:00
Ricardo Wurmus d7f578f8c2
gnu: r-pbapply: Update to 1.4-3. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
 2020-08-20 19:32:24 +02:00