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5661 Commits (dd01fecd23a4ded46b99a51dc08ac5d964dbcd53)

Author SHA1 Message Date
Ludovic Courtès 64c9834716 gnu: emacs: Claim 'INFOPATH'.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.

* gnu/packages/emacs.scm (emacs)[native-search-path]: New field.
2015-10-01 11:28:19 +02:00
Ben Woodcroft a2950fa4dc gnu: Add vsearch.
* gnu/packages/bioinformatics.scm (vsearch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-10-01 10:51:28 +02:00
Ben Woodcroft aae2b445a4 gnu: Add cityhash.
* gnu/packages/textutils.scm (cityhash): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-10-01 10:36:11 +02:00
Mark H Weaver b73547e179 gnu: linux-libre: Update to 4.2.2.
* gnu/packages/linux.scm (linux-libre): Update to 4.2.2.
2015-09-30 12:48:40 -04:00
Julian Graham c24fff615b gnu: Add gzochi.
* gnu/packages/game-development.scm (gzochi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2015-09-29 23:56:37 +02:00
Jeff Mickey 820dc3f5f1 gnu: Add pigz.
* gnu/packages/compression.scm (pigz): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2015-09-29 23:40:10 +02:00
Ludovic Courtès 0b1f0d36b1 gnu: lsh: 'lsh-authorize' uses the absolute file name of 'sexp-conv'.
Fixes <http://bugs.gnu.org/21516>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/lsh.scm (lsh)[arguments]: In 'pre-configure' phase,
  change 'src/lsh-authorize' to use the absolute file name of
  'sexp-conv'.
2015-09-28 22:54:04 +02:00
Pjotr Prins b2bddb07ef gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
2015-09-28 12:22:47 +02:00
Vicente Vera Parra 0e4e03f884 gnu: Add r-data.table.
* gnu/packages/statistics.scm (r-data.table): New variable.
2015-09-28 11:07:23 +02:00
Vicente Vera Parra 91312ebed4 gnu: Add r-chron.
* gnu/packages/statistics.scm (r-chron): New variable.
2015-09-28 11:07:10 +02:00
Ricardo Wurmus ea5616e0e6 gnu: Add r-servr.
* gnu/packages/web.scm (r-servr): New variable.
2015-09-28 10:35:19 +02:00
Ricardo Wurmus 21d3770e02 gnu: Add r-jsonlite.
* gnu/packages/web.scm (r-jsonlite): New variable.
2015-09-28 10:35:19 +02:00
Ricardo Wurmus a359c9c15c gnu: Add r-httpuv.
* gnu/packages/web.scm (r-httpuv): New variable.
2015-09-28 10:35:19 +02:00
Mathieu Lirzin ae05b1856f gnu: Add arandr.
* gnu/packages/xdisorg.scm (arandr): New variable.
2015-09-28 00:19:11 +02:00
Andreas Enge aab56ab7da gnu: avidemux: Build with Qt 5 instead of Qt 4.
* gnu/packages/video.scm (avidemux)[inputs]: Replace qt-4 by qt.
  [arguments]: Add build flag.
2015-09-27 00:06:30 +02:00
Andreas Enge c4c020b781 gnu: global: Update to 6.5.1.
* gnu/packages/code.scm (global): Update to 6.5.1.
2015-09-26 22:03:06 +02:00
Andreas Enge 308aa2e795 gnu: libmicrohttpd: Update to 0.9.43.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.43.
2015-09-26 22:03:06 +02:00
Andreas Enge f799c2820d gnu: ddrescue: Update to 1.20.
* gnu/packages/disk.scm (ddrescue): Update to 1.20.
2015-09-26 22:03:06 +02:00
Andreas Enge 19c34308d6 gnu: sipwitch: Update to 1.9.10.
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.10.
2015-09-26 22:03:06 +02:00
Andreas Enge b32eabe4bf gnu: ucommon: Update to 6.6.0.
* gnu/packages/telephony.scm (ucommon): Update to 6.6.0.
2015-09-26 22:03:06 +02:00
Andreas Enge fdcb976815 gnu: parallel: Update to 20150922.
* gnu/packages/parallel.scm (parallel): Update to 20150922.
2015-09-26 22:03:06 +02:00
Paul van der Walt b2a222445e gnu: xapian: Update to 1.2.21.
* gnu/packages/search.scm (xapian): Update to 1.2.21.
2015-09-26 21:41:26 +02:00
Paul van der Walt c284e78fa4 gnu: mu: Update to 0.9.13.
* gnu/packages/mail.scm (mu): Update to 0.9.13.
2015-09-26 21:11:30 +02:00
Paul van der Walt dc5f87f42a gnu: ncmpcpp: Update to 0.6.7.
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.6.7.
2015-09-26 20:57:44 +02:00
Mark H Weaver d2a6336609 gnu: qemu: Update to 2.4.0.1. Include fix for CVE-2015-6855.
* gnu/packages/patches/qemu-CVE-2015-3209.patch,
  gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch,
  gnu/packages/patches/qemu-CVE-2015-5745.patch: Delete files.
* gnu/packages/patches/qemu-CVE-2015-6855.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch and delete the old ones.
* gnu/packages/qemu.scm (qemu-headless): Update to 2.4.0.1.  Add the new patch
  and delete the old ones.
2015-09-26 10:32:19 -04:00
Ludovic Courtès e1556533d3 Merge branch 'core-updates' 2015-09-26 15:14:53 +02:00
Andreas Enge 92f1cefb74 gnu: ibus: Add input gtk+-3.
* gnu/packages/ibus.scm (ibus)[inputs]: Add the required gtk+-3.
2015-09-26 11:22:11 +02:00
宋文武 dd8d6d6547 gnu: Add squashfs-tools.
* gnu/packages/compression.scm (squashfs-tools): New variable.
2015-09-26 10:31:07 +08:00
Ricardo Wurmus 1f321f8763 gnu: Add Gajim.
* gnu/packages/messaging.scm (gajim): New variable.
2015-09-25 21:44:30 +02:00
Ricardo Wurmus 246bc76a15 gnu: Add python-nbxmpp.
* gnu/packages/messaging.scm (python-nbxmpp, python2-nbxmpp): New
  variables.
2015-09-25 21:44:30 +02:00
Ricardo Wurmus 22af90291f gnu: Add python-gnupg.
* gnu/packages/gnupg.scm (python-gnupg, python2-gnupg): New variables.
2015-09-25 21:44:30 +02:00
Ricardo Wurmus 5af999b898 gnu: Add pyOpenSSL.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): New
  variables.
2015-09-25 21:44:30 +02:00
Ricardo Wurmus 88b47cb0e0 gnu: Add python-cryptography.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
  New variables.
2015-09-25 21:44:29 +02:00
Ricardo Wurmus aa759a5139 gnu: Add python-cryptography-vectors.
* gnu/packages/python.scm (python-cryptography-vectors,
  python2-cryptography-vectors): New variables.
2015-09-25 21:44:29 +02:00
Ricardo Wurmus 36ebf97283 gnu: Add python-pretend.
* gnu/packages/python.scm (python-pretend, python2-pretend): New
  variables.
2015-09-25 21:44:29 +02:00
Ricardo Wurmus 3f00e07866 gnu: Add python-idna.
* gnu/packages/python.scm (python-idna, python2-idna): New variables.
2015-09-25 21:44:29 +02:00
Ricardo Wurmus 9a49a5351c gnu: Add python-ipaddress.
* gnu/packages/python.scm (python2-ipaddress): New variable.
2015-09-25 21:44:29 +02:00
Ludovic Courtès 791076cc91 gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to abbe2c6.
2015-09-25 18:11:37 +02:00
Ludovic Courtès e2aace769c gnu: glibc-locales: Update to glibc 2.22.
* gnu/packages/base.scm (glibc-locales)[arguments]: Remove
  'delete-file-recursively' call from 'build' phase.
* gnu/packages/patches/glibc-locales.patch: Adjust to glibc 2.22.
2015-09-25 17:02:13 +02:00
Ben Woodcroft d708b7a973 gnu: Add seqmagick.
* gnu/packages/bioinformatics.scm (seqmagick): New variable.
2015-09-25 16:16:28 +02:00
Ludovic Courtès c3aeac385a gnu: tcl: Add missing -L flag in tk.pc and tkConfig.sh.
* gnu/packages/tcl.scm (tk)[arguments]: Use 'modify-phases'.  Add
  'add-fontconfig-flag' phase.
  [inputs]: Add FONTCONFIG.
2015-09-24 23:01:22 +02:00
Ludovic Courtès 1007b6bf0b Merge branch 'master' into core-updates 2015-09-24 22:18:07 +02:00
Ricardo Wurmus 7a8ac75a94 gnu: Add python-pyasn1.
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): New
  variables.
2015-09-24 20:08:25 +02:00
Ricardo Wurmus 4179f952bf gnu: python-cffi: Update to 1.2.1.
* gnu/packages/python.scm (python-cffi): Update to 1.2.1.
  [native-inputs]: Add python-pytest.
  [arguments]: Enable tests.
2015-09-24 20:07:41 +02:00
Ludovic Courtès 99d7460d78 gnu: Import modules needed by openimageio.
* gnu/packages/graphics.scm: Add missing imports.  This is a followup to
  commit 71299c1.
2015-09-23 09:05:15 +02:00
Ricardo Wurmus 71299c1297 gnu: Add openimageio.
* gnu/packages/graphics.scm (openimageio): New variable.
2015-09-23 08:35:05 +02:00
Ricardo Wurmus caf9055c13 gnu: Add XJackFreak.
* gnu/packages/audio.scm (xjackfreak): New variable.
2015-09-23 08:14:33 +02:00
Mark H Weaver bd90127ad4 Merge branch 'master' into core-updates 2015-09-22 16:38:48 -04:00
Andreas Enge 5f20553dee gnu: r-scales: Update to 0.3.0.
* gnu/packages/statistics.scm (r-scales): Update to 0.3.0.
2015-09-22 22:28:21 +02:00
Andreas Enge efd377221d gnu: csound: Update to 6.05.
* gnu/packages/audio.scm (csound): Update to 6.05.
2015-09-22 22:10:20 +02:00
Andreas Enge 20c6b9dae3 gnu: Add bitcoin-core.
* gnu/packages/finance.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
2015-09-22 20:07:49 +02:00
Mark H Weaver ee1c4cbaf9 gnu: linux-libre: Update to 4.2.1.
* gnu/packages/linux.scm (linux-libre): Update to 4.2.1.
2015-09-22 13:55:15 -04:00
Andreas Enge 61fe5a57a4 gnu: cgal: Update to 4.6.3.
* gnu/packages/graphics.scm (cgal): Update to 4.6.3.
2015-09-22 19:25:33 +02:00
Leo Famulari 7ae7ca0e2a gnu: recutils: Add libuuid to native-inputs.
* gnu/packages/databases.scm (recutils)[native-inputs]: Add "libuuid".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-09-22 17:41:11 +02:00
Ricardo Wurmus 667d90dfee gnu: python2-ipython: Override terminado in propagated inputs.
* gnu/packages/python.scm (python2-ipython)[inputs, propagated-inputs]:
  Override inherited "python-terminado" in propagated inputs instead of
  regular inputs.
2015-09-21 16:27:23 +02:00
Ludovic Courtès 1def6f6b2c gnu: pixman: Work around pointer arithmetic bug.
* gnu/packages/patches/pixman-pointer-arithmetic.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[source]: Use it.
2015-09-21 16:01:45 +02:00
Ricardo Wurmus 91781b7498 gnu: r-scales: Update to 0.3.0.
* gnu/packages/statistics.scm (r-scales): Update to 0.3.0.
2015-09-21 11:04:17 +02:00
Vicente Vera Parra 2a3a8ae753 gnu: Add r-dplyr.
* gnu/packages/statistics.scm (r-dplyr): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra ffd4b47851 gnu: Add r-r6.
* gnu/packages/statistics.scm (r-r6): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 5b9789a6ff gnu: Add r-testthat.
* gnu/packages/statistics.scm (r-testthat): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 834f7ff3c0 gnu: Add r-crayon.
* gnu/packages/statistics.scm (r-crayon): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra b668a95cf3 gnu: Add r-memoise.
* gnu/packages/statistics.scm (r-memoise): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 0661b4db2e gnu: Add r-pryr.
* gnu/packages/statistics.scm (r-pryr): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 1cf1cbb0ac gnu: Add r-codetools.
* gnu/packages/statistics.scm (r-codetools): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 4f0e84845d gnu: Add r-microbenchmark.
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 213656b95b gnu: Add r-knitr.
* gnu/packages/statistics.scm (r-knitr): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra ea3a80957a gnu: Add r-yaml.
* gnu/packages/statistics.scm (r-yaml): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 3f8ac35330 gnu: Add r-markdown.
* gnu/packages/statistics.scm (r-markdown): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra acbb40fa20 gnu: Add r-mime.
* gnu/packages/statistics.scm (r-mime): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra ad3f005bdd gnu: Add r-highr.
* gnu/packages/statistics.scm (r-highr): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra c5bf3abe34 gnu: Add r-formatr.
* gnu/packages/statistics.scm (r-formatr): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 256ccc926c gnu: Add r-evaluate.
* gnu/packages/statistics.scm (r-evaluate): New variable.
2015-09-21 10:48:26 +02:00
Vicente Vera Parra 675c9f447b gnu: Add r-bh.
* gnu/packages/statistics.scm (r-bh): New variable.
2015-09-21 10:48:26 +02:00
Ricardo Wurmus 9cda36227b gnu: Use cran-uri in source expressions.
* gnu/packages/statistics.scm (r-colorspace, r-dichromat, r-digest,
  r-gtable, r-labeling, r-magrittr, r-munsell, r-rcpp, r-plyr, r-proto,
  r-rcolorbrewer, r-stringi, r-stringr, r-reshape2, r-scales, r-ggplot2,
  r-assertthat, r-lazyeval, r-dbi): Use cran-uri in source expressions.
2015-09-21 10:48:26 +02:00
Ricardo Wurmus fed5a6898b gnu: Add shotwell.
* gnu/packages/gnome.scm (shotwell): New variable.
2015-09-21 07:45:20 +02:00
Ricardo Wurmus b0f9c4b86c gnu: Add gexiv2.
* gnu/packages/gnome.scm (gexiv2): New variable.
2015-09-21 07:31:50 +02:00
Ricardo Wurmus af8f9f231e gnu: Add libgee.
* gnu/packages/gnome.scm (libgee): New variable.
2015-09-21 07:31:42 +02:00
Eric Bavier da494dad8e gnu: autogen: Update to 5.18.6.
* gnu/packages/autogen.scm (autogen): Update to 5.18.6.
2015-09-20 15:09:52 -05:00
Eric Bavier f210647da2 gnu: gnu-pw-mgr: Update to 1.5.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.5.
2015-09-20 15:09:51 -05:00
Ludovic Courtès 07779d0add linux-initrd: Add LUKS/dm-crypt modules to the initrd.
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.

Partly fixes <http://bugs.gnu.org/19190>.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add dm-crypt
  and xts.
2015-09-20 22:05:50 +02:00
Ludovic Courtès cc0e575a94 linux-boot: Mount /dev as a devtmpfs from the start.
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.
Reported by Duncan Keall <duncan@duncankeall.com>.

Partly fixes <http://bugs.gnu.org/19190> by populating /dev/mapper
early enough.

* gnu/build/linux-boot.scm (mount-essential-file-systems): Mount /dev as
  a devtmpfs.
  (move-essential-file-systems): Add /dev.
  (mount-root-file-system): Mount /rw-root/dev as a devtmpfs instead of
  calling 'make-essential-device-nodes'.
  (boot-system): Remove call to 'make-essential-device-nodes'.
* gnu/system/file-systems.scm (%devtmpfs-file-system): Remove.
* doc/guix.texi (File Systems): Adjust accordingly.
2015-09-20 22:05:36 +02:00
Ricardo Wurmus 7ee5db15bf gnu: openal: Use full path to audio backend libraries.
* gnu/packages/audio.scm (openal)[arguments]: Add build phase to patch in the
  full paths to backend audio libraries.
2015-09-20 13:43:38 +02:00
Ricardo Wurmus 594360f508 gnu: vpnc: Use https for source URL.
* gnu/packages/vpn.scm (vpnc)[source]: Use https protocol for source URL.
2015-09-20 11:37:43 +02:00
Ricardo Wurmus 127b04d741 gnu: lilypond: Update to 2.19.27.
* gnu/packages/music.scm (lilypond): Update to 2.19.27.
  [inputs]: Add font-tex-gyre.
2015-09-20 11:37:36 +02:00
Ricardo Wurmus 7d1b5022e9 gnu: sfml: Update to 2.3.2.
* gnu/packages/game-development.scm (sfml): Update to 2.3.2.
  [native-inputs]: Remove.
2015-09-20 10:08:26 +02:00
Cyril Roelandt d7af106987 gnu: Add python2-keyring.
* gnu/packages/python.scm (python2-keyring): New variable.
2015-09-20 04:42:15 +02:00
Cyril Roelandt 7261d9eb16 gnu: Add python2-pyflakes and fix python2-pyflakes-0.8.1.
* gnu/packages/python.scm (python2-pyflakes): New variable.
* gnu/packages/python.scm (python2-pyflakes-0.8.1): Fix the definition.
2015-09-20 04:41:51 +02:00
Cyril Roelandt 350ba0a32b gnu: Add python-prettytable
* gnu/packages/python.scm (python-prettytable,
  python2-prettytable): New variables.
2015-09-20 04:29:10 +02:00
David Thompson f88ee3ade7 gnu: avahi: Enable libdns_sd compatibility.
* gnu/packages/avahi.scm (avahi): Add '--enable-compat-libdns_sd' configure
  flag.
2015-09-19 21:38:33 -04:00
Mark H Weaver 65d54af49f gnu: icu4c: Add fixes for CVE-2014-6585 and CVE-2015-1270.
* gnu/packages/patches/icu4c-CVE-2014-6585.patch,
  gnu/packages/patches/icu4c-CVE-2015-1270.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/icu4c.scm (icu4c)[source]: Add patches.
2015-09-19 21:35:18 -04:00
Andreas Enge a5002ae77c gnu: Add R/qtl.
* gnu/packages/bioinformatics.scm (r-qtl): New variable.

Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
2015-09-20 00:32:45 +02:00
Andreas Enge e49b339608 gnu: libmtp: Add additional MTP devices.
* gnu/packages/patches/libmtp-devices.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/patches/libmtp-devices.patch (libmtp)[source]: Add patch.
2015-09-19 23:38:51 +02:00
Mark H Weaver 257abebba3 gnu: gtk+: Adapt pre-configure phase to version 3.16.6.
This is a followup to commit a35b8fc6c4.

* gnu/packages/gtk.scm (gtk+)[arguments]: In 'pre-configure' phase, remove
  substitutions of 'gtk-update-icon-cache' in demo Makefiles.
2015-09-19 17:32:10 -04:00
Pjotr Prins edb15985f1 gnu: Add bioruby.
* gnu/packages/bioinformatics.scm (bioruby): New variable.
2015-09-19 12:41:52 -04:00
Pjotr Prins 28c5d42d35 gnu: Add ruby-libxml.
* gnu/packages/ruby.scm (ruby-libxml): New variable.
2015-09-19 12:31:42 -04:00
Ricardo Wurmus 7ac4610f7e gnu: Add ruby-shindo.
* gnu/packages/ruby.scm (ruby-shindo): New variable.
2015-09-19 08:51:27 -04:00
Ricardo Wurmus 8528365b0e gnu: Add ruby-formatador.
* gnu/packages/ruby.scm (ruby-formatador): New variable.
2015-09-19 08:51:13 -04:00
Ricardo Wurmus d152162fc1 gnu: Add ruby-notiffany.
* gnu/packages/ruby.scm (ruby-notiffany): New variable.
2015-09-19 08:49:11 -04:00
Ricardo Wurmus c5d14d4228 gnu: Add ruby-shellany.
* gnu/packages/ruby.scm (ruby-shellany): New variable.
2015-09-19 08:45:12 -04:00
Ricardo Wurmus 70b4cf3818 gnu: Add ruby-nenv.
* gnu/packages/ruby.scm (ruby-nenv): New variable.
2015-09-19 08:44:13 -04:00