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67827 Commits (de949bac61b66209cf952028be4570c9dd84c7b0)

Author SHA1 Message Date
Tobias Geerinckx-Rice d102e9a139
gnu: dash: Update to 0.5.11.4.
* gnu/packages/shells.scm (dash): Update to 0.5.11.4.
2021-06-06 20:51:21 +02:00
Tobias Geerinckx-Rice 5c38e5e24e
gnu: pidgin: Update to 2.14.5.
* gnu/packages/messaging.scm (pidgin): Update to 2.14.5.
2021-06-06 20:51:20 +02:00
Solene Rapenne via Guix-patches via e2ad110f4c
gnu: vlc: Update to 3.0.14.
* gnu/packages/video.scm (vlc): Update to 3.0.14.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-06 18:34:12 +02:00
Tobias Geerinckx-Rice d00713d49e
gnu: git: Update to 2.32.0.
* gnu/packages/version-control.scm (git): Update to 2.32.0.
2021-06-06 18:34:12 +02:00
Denis 'GNUtoo' Carikli 3c401ca6df
gnu: Add matterbridge.
* gnu/packages/messaging.scm (matterbridge): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-06 18:29:36 +02:00
Hartmut Goebel 5d4bd2ee94
gnu: Add python-pytest-mp.
* gnu/packages/python-check.scm (python-pytest-mp): New variable.
2021-06-06 17:50:33 +02:00
Hartmut Goebel d8fed768a8
gnu: Add python-asn1tools.
* gnu/packages/python-xyz.scm (python-asn1tools): New variable.
2021-06-06 17:50:33 +02:00
pukkamustard 52dc188e12
gnu: Add ocaml-ppx-cold.
* gnu/packages/ocaml.scm (ocaml-ppx-cold): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:17:22 +02:00
pukkamustard 7cf518ee85
gnu: Add ocaml-ppx-here.
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
  (ocaml4.07-ppx-here): Inherit from ocaml-ppx-here.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:58 +02:00
pukkamustard c35fd0374d
gnu: Add ocaml-ppx-compare.
* gnu/packages/ocaml.scm (ocaml-ppx-compare): New variable.
  (ocaml4.07-ppx-compare): Inherit from ocaml-ppx-compare.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:56 +02:00
pukkamustard 5b61a1472b
gnu: Add ocaml-syntax-shims.
* gnu/packages/ocaml.scm (ocaml-syntax-shims): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:52 +02:00
pukkamustard 3649c56a5f
gnu: Add ocaml-ppx-let.
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
  (ocaml4.07-ppx-let): Inherit from ocaml-ppx-let.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:50 +02:00
pukkamustard 6f4f9c4d55
gnu: Add ocaml-bigstringaf.
* gnu/ocaml/packages.scm (ocaml-bigstringaf): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:48 +02:00
pukkamustard c729d98610
gnu: Add ocaml-ppx-sexp-conv.
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
  (ocaml4.07-ppx-sexp-conv): Inherit from ocaml-ppx-sexp-conv.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:45 +02:00
pukkamustard ec31363e22
gnu: Add ocaml-uunf.
* gnu/packages/ocaml.scm (ocaml-uunf): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:43 +02:00
pukkamustard 59a39ec61b
gnu: Add ocaml-sedlex.
* gnu/packages/ocaml.scm (ocaml-sedlex): New variable.
  (ocaml4.07-sedlex): Inherit from ocaml-sedlex.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:41 +02:00
pukkamustard 262683250c
gnu: Add ocaml-ppxlib.
* gnu/packages/ocaml.scm (ocaml-ppxlib): New variable.
  (ocaml4.07-ppxlib): Inherit from ocaml-ppxlib.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:39 +02:00
pukkamustard 3c8899160b
gnu: ocaml-migrate-parsetree: Update to 2.1.0.
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 2.1.0.
  (ocaml-migrate-parsetree-1): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:37 +02:00
pukkamustard cfa65d7770
gnu: Add ocaml-compiler-libs.
* gnu/packages/ocaml.scm (ocaml-compiler-libs): New variable.
  (ocaml4.07-compiler-libs): Inherit from ocaml-compiler-libs.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:35 +02:00
pukkamustard 8f5aa879de
gnu: Add ocaml-stdio.
* gnu/packages/ocaml.scm (ocaml-stdio): New variable.
  (ocaml4.07-stdio): Inherit from ocaml-stdio.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:33 +02:00
pukkamustard 4b6e1fba5a
gnu: Add ocaml-gen.
* gnu/packages/ocaml.scm (ocaml-gen): New variable.
  (ocaml4.07-gen): Remove variable.
  (ocaml4.07-sedlex): Replace ocaml4.07-gen with ocaml-gen.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:31 +02:00
pukkamustard 99ed037081
gnu: ocaml4.07-gen: Update to 0.5.3.
* gnu/packages/ocaml.scm (ocaml4.07-gen): Update to 4.07.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:29 +02:00
pukkamustard b3bc7489c6
gnu: ocaml-lwt: Update to 5.4.0.
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.4.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:27 +02:00
pukkamustard 0f5f8d48f8
gnu: ocaml-lwt: Make libev a propagated input.
* gnu/packages/ocaml.scm (ocaml-lwt) [propagated-inputs]: Add libev.
  [inputs]: Remove libev.
  (ocaml-ouint2, ocaml4.07-lambda-term, ocaml-markup) [inputs]: Remove libev.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:25 +02:00
pukkamustard 5a4acc5331
gnu: ocaml-ctypes: Make ocaml-integers a propagated input.
* gnu/packages/ocaml.scm (ocaml-ctypes)[propagated-inputs]: Add ocaml-integers.
  [inputs]: Remove ocaml-integers.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:22 +02:00
pukkamustard 0f62ea0774
gnu: ocaml-ctypes: Update to 0.18.0.
* gnu/packages/ocaml.scm (ocaml-ctypes): Update to 0.18.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:16:20 +02:00
pukkamustard b477a9f42e
gnu: ocaml-integers: Update to 0.4.0.
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.4.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-06 17:15:58 +02:00
Matthew James Kraai b2122b07dc
gnu: xf86-input-libinput: Update to 1.0.1.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 1.0.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-06 16:19:53 +02:00
Tobias Geerinckx-Rice db6ff6da15
gnu: xf86-input-libinput: Fix licence information.
* gnu/packages/xorg.scm (xf86-input-libinput)[license]: This package is
almost exclusively expat, with a single x11 file that's not installed.
2021-06-06 16:19:52 +02:00
Matthew James Kraai b6affc5c04
gnu: xterm: Update to 367.
* gnu/packages/xorg.scm (xterm): Update to 367.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-06 15:50:24 +02:00
Domagoj Stolfa 77056478a2
gnu: strongswan: Configure more sensible defaults.
* gnu/packages/networking.scm (strongswan)[arguments]<#:configure-flags>:
Enable aesni, attr-sql, chapoly, curl, dhcp, eap-aka, eap-aka-3gpp,
eap-dynamic, eap-identity, eap-md5, eap-mschapv2, eap-peap, eap-radius,
eap-sim, eap-sim-file, eap-simaka-pseudonym, eap-simaka-reauth,
eap-simaka-sql, eap-tls, eap-tnc, eap-ttls, ext-auth, farp, ha, led, md4,
mediation, openssl, soup, sql, sqlite, xauth-eap, xauth-noauth, and
xauth-pam support.
Disable ldap, mysql, and systemd support.
Use libcap by default.
[inputs]: Add libcap, libsoup, and linux-pam.
[native-inputs]: Add pkg-config.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-06 15:35:47 +02:00
Solene Rapenne ed057e33a5
gnu: tig: Update to 2.5.4.
* gnu/packages/version-control.scm (tig): Update to 2.5.4.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-06-06 18:11:50 +08:00
Jonathan Brielmaier db8ea15ba0
gnu: icedove-wayland: Refactor as a wrapper around icedove.
This saves us a full build of icedove-wayland analogue to
chromium-wayland.

* gnu/packages/gnuzilla.scm (icedove-wayland)[inputs]: Add bash and
icedove.
[arguments]: Copy the binary over and wrap it for Wayland. As well as
the desktop-file and the license file.
2021-06-06 11:26:20 +02:00
Efraim Flashner b65c02e2d3
gnu: freebayes: Update to 1.3.5.
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5.
[source]: Remove patch.
[arguments]: Adjust custom 'patch-source phase for changes in source.
[inputs]: Remove zlib.
* gnu/packages/patches/freebayes-devendor-deps.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-06 12:13:28 +03:00
Efraim Flashner 1fd8819fac
gnu: poke: Update to 1.3.
* gnu/packages/engineering.scm (poke): Update to 1.3.
2021-06-06 10:53:55 +03:00
Guillaume Le Vaillant da28abcfb0
gnu: sdrangel: Add SoapySDR support.
* gnu/packages/radio.scm (sdrangel)[inputs]: Add soapysdr.
  [arguments]: Update 'configure-flags'.
2021-06-06 09:46:04 +02:00
Nicolas Goaziou 04beee1632
gnu: emacs-company-irony: Update to 1.1.1.
* gnu/packages/emacs-xyz.scm (emacs-company-irony): Update to 1.1.1.
[inputs]: Re-order alphabetically.
[descrption]: Properly capitalize.
2021-06-06 09:06:40 +02:00
Nicolas Goaziou 36fd42ded2
gnu: emacs-elfeed-score: Update to 0.7.9.
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 0.7.9.
2021-06-06 09:03:24 +02:00
Maxim Cournoyer 7fd2c9a00e
gnu: msgpack: Update to 3.3.0.
* gnu/packages/serialization.scm (msgpack): Update to 3.3.0.
2021-06-06 02:38:29 -04:00
Maxim Cournoyer 876f4071ab
gnu: libvpx: Update to 1.10.0.
* gnu/packages/video.scm (libvpx): Update to 1.10.0.
2021-06-06 02:38:29 -04:00
Maxim Cournoyer 544a980f3a
gnu: czmq: Re-enable previously failing tests, fixed in 4.2.1.
* gnu/packages/networking.scm (czmq)[phases]: Delete argument.
2021-06-06 02:38:29 -04:00
Maxim Cournoyer a18079288f
gnu: ppsspp: Update to 1.11.3-1.69fa207.
This fixes the build with ffmpeg 4.4.

* gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Rebase patch.
* gnu/packages/emulators.scm (ppsspp): Update to 1.11.3-1.69fa207.
[source]: Adjust origin snippet to unbundle the newly added zstd library.
2021-06-06 02:38:29 -04:00
Maxim Cournoyer 6a0d0c3c47
gnu: libopenshot: Use ffmpeg-4.3.
* gnu/packages/video.scm (libopenshot)
[propagated-inputs]{ffmpeg}: Downgrade to ffmpeg 4.3 to fix build.
2021-06-06 02:38:29 -04:00
Maxim Cournoyer 30eccefa39
gnu: Add ffmpeg-4.3.
* gnu/packages/video.scm (ffmpeg-4.3): New variable.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer 4d0030eec5
gnu: diffoscope: Update to 177.
This resolves a problem with ffmpeg 4.4.

* gnu/packages/diffoscope.scm (diffoscope): Update to 177.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer f02b9d6d2c
gnu: ffmpeg: Update to 4.4.
* gnu/packages/video.scm (ffmpeg): Update to 4.4.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer d8c06d8789
gnu: Remove rust-rav1e.
This package is superseded by rav1e.

Note: I tried defining an alias like so:

  (define-public rust-rav1e
    (deprecated-package "rust-rav1e" rav1e))

But it caused a problem where the 'rav1e' variable would appear unbound.

* gnu/packages/crates-graphics.scm (rust-rav1e-0.4): Remove.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer 1c5781bc0d
gnu: rust-ravif: Use rav1e instead of rust-rav1e.
With the rav1e package having been brought up to par with rust-rav1e,
rust-ravif can use rav1e directly.

* gnu/packages/crates-graphics.scm (rust-ravif)
[cargo-inputs]{rust-rav1e}: Replace with...
{rav1e}: ... this.
[cargo-development-inputs]: New argument.
[native-inputs]: New field.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer ba047d8bc2
gnu: Add rust-avif-parse-0.13.
* gnu/packages/crates-graphics.scm (rust-avif-parse-0.13): New variable.
2021-06-06 02:38:28 -04:00
Maxim Cournoyer 93baaf55cc
gnu: Add rust-bitreader-0.3.
* gnu/packages/crates-io.scm (rust-bitreader-0.3): New variable.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer 916bbf53a9
gnu: Add rust-fallible-collections-0.4.
* gnu/packages/crates-io.scm (rust-fallible-collections-0.4): New variable.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer 636e478bac
gnu: rav1e: Update to 0.4.1.
* gnu/packages/video.scm (rav1e): Update to 0.4.1.
[source]: Fix indentation.
[cargo-inputs]{rust-arbitrary}: Update to 0.4.
{rust-av-metrics}: New input.
{rust-bitstream-io}: Update to 1.
{rust-cfg-if}: Update to 1.
{rust-console}: Update to 0.14.
{rust-crossbeam}: New input.
{rust-itertools}: Update to 0.10.
{rust-libfuzzer-sys}: New input.
{rust-noop-proc-macro}: Update to 0.3.
{rust-paste}: Update to 1.
{rust-rand}: Update to 0.8.
{rust-rand-chacha}: Update to 0.3.
{rust-regex}: New input.
{rust-rustc-version}: Update to 0.3.
{rust-signal-hook}: Update to 0.3.
{rust-v-frame, rust-wasm-bindgen}: New inputs.
{rust-cc: Move to...
[cargo-development-inputs]: ... here.
{rust-rand}: Update to 0.8.
{rust-rand-chacha}: Update to 0.3.
{rust-semver}: Update to 0.11.
[inputs]{nasm}: Move to...
[native-inputs]: ... here.  This was spotted by 'guix lint'.
[synopsis]: Focus on facts, toning down marketing.
[description]: Expound.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer 62b1c4718c
gnu: rust-cargo-c: Update to 0.8.1+cargo-0.53.
* gnu/packages/rust-apps.scm (rust-cargo-c): Update to 0.8.1+cargo-0.53.
[cargo-inputs]{rust-cbindgen}: Update to 0.19.
{rust-semver}: Update to 0.10.
{rust-serde-json}: Update to 1.
{rust-cargo, rust-anyhow}: New inputs.
[native-inputs]: New field.
[inputs]: New field.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer b95e43b4fd
gnu: rust-serde-json-1: Update to 1.0.64.
* gnu/packages/crates-io.scm (rust-serde-json-1): Update to 1.0.64.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer 9fed4419bc
gnu: Add rust-cargo-0.53.
* gnu/packages/crates-io.scm (rust-cargo-0.53): New variable.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer 0ededfaaad
gnu: Add rust-commoncrypto-0.2.
* gnu/packages/crates-io.scm (rust-commoncrypto-0.2): New variable.
2021-06-06 02:38:27 -04:00
Maxim Cournoyer aacc47eb4c
gnu: Add rust-commoncrypto-sys-0.2.
* gnu/packages/crates-io.scm (rust-commoncrypto-sys-0.2): New variable.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer 25c4ad2771
gnu: Add rust-bytesize-1.
* gnu/packages/crates-io.scm (rust-bytesize-1): New variable.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer c5f0ce2244
gnu: Add rust-cargo-platform-0.1.
* gnu/packages/crates-io.scm (rust-cargo-platform-0.1): New variable.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer b5a68bde6a
gnu: Add rust-crates-io-0.33.
* gnu/packages/crates-io.scm (rust-crates-io-0.33): New variable.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer bc11792923
gnu: Add rust-crypto-hash-0.3.
* gnu/packages/crates-io.scm (rust-crypto-hash-0.3): New variable.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer 2e79f847fd
gnu: rust-filetime-0.2: Update to 0.2.14.
* gnu/packages/crates-io.scm (rust-filetime-0.2): Update to 0.2.14.
[cargo-inputs]{rust-cargo-if}: Update to version 1.
{rust-redox-syscall}: Update to version 0.2.
2021-06-06 02:38:26 -04:00
Maxim Cournoyer 4acd1213a3
gnu: Add rust-fwdansi-1.
* gnu/packages/crates-io.scm (rust-fwdansi-1): New variable.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer 0fbaf75b1a
gnu: rust-git2-0.13: Update to 0.13.20.
* gnu/packages/crates-io.scm (rust-git2-0.13): Update to 0.13.20.
[cargo-development-inputs]{rust-paste}: Update to version 1.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer 8550b41744
gnu: rust-libgit2-sys-0.7: Remove unused package.
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.7): Delete variable.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer b0c53f5c28
gnu: rust-libgit2-sys-0.12: Update to 0.12.21+1.1.0.
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.12): Update to 0.12.21+1.1.0.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer bb162c120a
gnu: Add rust-git2-curl-0.14.
* gnu/packages/crates-io.scm (rust-git2-curl-0.14): New variable.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer b96fd1a4a2
gnu: Add rust-home-0.5.
* gnu/packages/crates-io.scm (rust-home-0.5): New variable.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer 93f2fde4c5
gnu: Add rust-im-rc-15.
* gnu/packages/crates-io.scm (rust-im-rc-15): New variable.
2021-06-06 02:38:25 -04:00
Maxim Cournoyer a38cb9c70e
gnu: Add rust-metrohash-1.
* gnu/packages/crates-io.scm (rust-metrohash-1): New variable.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer 3cc41bcade
gnu: Add rust-twox-hash-1.
* gnu/packages/crates-io.scm (rust-twox-hash-1): New variable.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer 3de4953eac
gnu: rust-digest-0.8: Fix the version of its rust-generic-array input.
* gnu/packages/crates-io.scm (rust-digest-0.8)
[cargo-inputs]: Adjust the version of the rust-generic-array to 0.12.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer 2394bd78fa
gnu: Add rust-sized-chunks-0.6.
* gnu/packages/crates-io.scm (rust-sized-chunks-0.6): New variable.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer 269e63865c
gnu: Add rust-refpool-0.4.
* gnu/packages/crates-io.scm (rust-refpool-0.4): New variable.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer 94b41147c2
gnu: Add rust-bitmaps-2.
* gnu/packages/crates-io.scm (rust-bitmaps-2): New variable.
2021-06-06 02:38:24 -04:00
Maxim Cournoyer b36299c7f4
gnu: Add rust-array-ops-0.1.
* gnu/packages/crates-io.scm (rust-array-ops-0.1): New variable.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer 014d0ee878
gnu: rust-jobserver-0.1: Update to 0.1.22.
* gnu/packages/crates-io.scm (rust-jobserver-0.1): Update to 0.1.22.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer 6661e83a23
gnu: Add rust-arbitrary-1.
* gnu/packages/crates-io.scm (rust-arbitrary-1): New variable.
(rust-arbitrary-0.4): Inherit from rust-arbitrary-1.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer e6c5d08479
gnu: Add rust-derive-arbitrary-1.
* gnu/packages/crates-io.scm (rust-derive-arbitrary-1): New variable.
(rust-derive-arbitrary-0.4): Inherit from the above.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer 41e6f47071
gnu: Add rust-opener-0.4.
* gnu/packages/crates-io.scm (rust-opener-0.4): New variable.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer 1c47e771a5
gnu: Add rust-rustc-workspace-hack-1.
* gnu/packages/crates-io.scm (rust-rustc-workspace-hack-1): New variable.
2021-06-06 02:38:23 -04:00
Maxim Cournoyer 7ea0a2ec97
gnu: Add rust-serde-ignored-0.1.
* gnu/packages/crates-io.scm (rust-serde-ignored-0.1): New variable.
2021-06-06 02:38:22 -04:00
Maxim Cournoyer be59ed491a
gnu: Add rust-rustfix-0.5.
* gnu/packages/crates-io.scm (rust-rustfix-0.5): New variable.
(rust-rustfix-0.4): Inherit from the above.
2021-06-06 02:38:22 -04:00
Maxim Cournoyer 3a9923d4b8
gnu: rust-v-frame-0.2: Update to 0.2.1.
* gnu/packages/crates-io.scm (rust-v-frame-0.2): Update to 0.2.1.
[synopsis]: Fix capitalization lint warning.
[description]: Re-indent.
2021-06-06 02:38:22 -04:00
Mădălin Ionel Patrașcu d1e7b50dbf
gnu: python-cooler: Update to 0.8.11.
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.11.
[arguments]: Add build phase "patch-tests"; replace "check" phase.
[native-inputs]: Add python-codecov, python-pytest-cov, and
python-pytest-flake8.
[propagated-inputs]: Add python-six and python-sparse.
2021-06-06 08:33:21 +02:00
Mădălin Ionel Patrașcu 78469645fd
gnu: Add python-sparse.
* gnu/packages/python-xyz.scm(python-sparse): New variable.
2021-06-06 08:33:21 +02:00
Guillaume Le Vaillant 9caf7112ee
gnu: gr-osmosdr: Add SoapySDR support.
* gnu/packages/radio.scm (gr-osmosdr)[inputs]: Add soapysdr.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant 60cd50af43
gnu: rtl-433: Add SoapySDR support.
* gnu/packages/radio.scm (rtl-433)[inputs]: Add soapysdr.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant 7a5d3976a2
gnu: welle-io: Add SoapySDR support.
* gnu/packages/radio.scm (welle-io)[inputs]: Add soapysdr.
  [arguments]: Update 'configure-flags'.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant 0855fd3de5
gnu: Add soapyairspyhf.
* gnu/packages/radio.scm (soapyairspyhf): New variable.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant ee586c9437
gnu: Add soapyrtlsdr.
* gnu/packages/radio.scm (soapyrtlsdr): New variable.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant 59ce827618
gnu: Add soapyhackrf.
* gnu/packages/radio.scm (soapyhackrf): New variable.
2021-06-06 00:25:49 +02:00
Guillaume Le Vaillant 524c64152a
gnu: Add soapysdr.
* gnu/packages/radio.scm (soapysdr): New variable.
2021-06-06 00:25:49 +02:00
Dion Mendel 08b55f1443
gnu: Add libdqlite.
* gnu/packages/cluster.scm (libdqlite): New Variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
Dion Mendel 404f6145ee
gnu: Add lxcfs.
* gnu/packages/virtualization.scm (lxcfs): New Variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
Brendan Tildesley 23ab8d417e
gnu: gparted: Update to 1.3.0.
* gnu/packages/disk.scm (gparted): Update to 1.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
Jonathan Brielmaier f1e0e5fde3
gnu: icedove: Update to 78.11.0 [fixes CVE-2021-29967].
* gnu/packages/gnuzilla.scm (icedove): Update to 78.11.0.
2021-06-05 23:07:06 +02:00
Antero Mejr 7905b901a2
gnu: Add nitrocli.
* gnu/packages/security-token.scm (nitrocli): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:50 +02:00
Antero Mejr 3463559d55
gnu: Add rust-base32-0.4.
* gnu/packages/crates-io.scm (rust-base32-0.4): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:50 +02:00
Antero Mejr add0c5f2b1
gnu: Add rust-envy-0.4.
* gnu/packages/crates-io.scm (rust-envy-0.4): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:49 +02:00
Antero Mejr 7b5f5aa82b
gnu: Add rust-merge-0.1.
* gnu/packages/crates-io.scm (rust-merge-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:49 +02:00
Antero Mejr 9c92fb862d
gnu: Add rust-merge-derive-0.1.
* gnu/packages/crates-io.scm (rust-merge-derive-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:12:01 +02:00
Antero Mejr ed30001472
gnu: Add rust-nitrokey-0.9.
* gnu/packages/crates-io.scm (rust-nitrokey-0.9): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:11:53 +02:00
Antero Mejr 51f5292014
gnu: Add rust-progressing-3.
* gnu/packages/crates-io.scm (rust-progressing-3): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:11:24 +02:00
Antero Mejr 38233e745e
gnu: rust-structopt-0.3: Update to 0.3.21.
* gnu/packages/crates-io.scm (rust-structopt-0.3): Update to 0.3.21.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:10:41 +02:00
Antero Mejr febfd4ce0d
gnu: rust-structopt-derive-0.4: Update to 0.4.14.
* gnu/packages/crates-io.scm (rust-structopt-derive-0.4): Update to 0.4.14.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:10:04 +02:00
Tobias Geerinckx-Rice bdd2970c08
gnu: wgetpaste: Update to 2.32.
* gnu/packages/wget.scm (wgetpaste): Update to 2.32.
[source]: Remove patch.
* gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05 19:14:15 +02:00
Tobias Geerinckx-Rice 2e97761efe
gnu: wgetpaste: Build from Git.
* gnu/packages/wget.scm (wgetpaste)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2021-06-05 19:14:14 +02:00
Tobias Geerinckx-Rice c107a30bb4
gnu: wgetpaste: Don't install LICENSE file twice.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Leave LICENSE file
installation to the aptly-named 'install-license-files default phase.
2021-06-05 19:14:14 +02:00
Tobias Geerinckx-Rice a80cde0326
gnu: console-setup: Update to 1.203.
* gnu/packages/xorg.scm (console-setup): Update to 1.203.
2021-06-05 19:01:08 +02:00
Tobias Geerinckx-Rice cd6c61f8c8
gnu: nzbget: Update to 21.1.
* gnu/packages/networking.scm (nzbget): Update to 21.1.
[source]: Remove upstreamed snippet.
2021-06-05 19:01:08 +02:00
Tobias Geerinckx-Rice ddc9da2ba9
gnu: faudio: Update to 21.06.
* gnu/packages/audio.scm (faudio): Update to 21.06.
2021-06-05 18:29:56 +02:00
Tobias Geerinckx-Rice f1a4b85af1
gnu: wireshark: Inspect HTTP/2 headers.
* gnu/packages/networking.scm (wireshark)[inputs]: Add nghttp2:lib.
2021-06-05 18:29:56 +02:00
Tobias Geerinckx-Rice 0339829a63
gnu: wireshark: Support more compression algorithms.
* gnu/packages/networking.scm (wireshark)[inputs]: Add google-brotli,
minizip, and zstd:lib.
2021-06-05 18:29:56 +02:00
Tobias Geerinckx-Rice debcc760e8
gnu: qca: Update to 2.3.3.
* gnu/packages/kde.scm (qca): Update to 2.3.3.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice d22b1b21f6
gnu: iperf: Update to 3.10.1.
* gnu/packages/networking.scm (iperf): Update to 3.10.1.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice c6e36ee2dc
gnu: ispell: Update to 3.4.04.
* gnu/packages/aspell.scm (ispell): Update to 3.4.04.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice 605a40b385
gnu: nnn: Remove marketing hyperbole.
* gnu/packages/admin.scm (nnn)[description]: Gush less.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice 49dd606f57
gnu: nnn: Use #:make-flags over Makefile patching.
* gnu/packages/admin.scm (nnn)[arguments]: Remove 'patch-pkg-config
phase.  Set PKG_CONFIG in #:make-flags instead.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice 1e1a274ffd
gnu: nnn: Update to 4.1.1.
* gnu/packages/admin.scm (nnn): Update to 4.1.1.
2021-06-05 18:29:55 +02:00
Tobias Geerinckx-Rice ddd871c18a
gnu: thermald: Compile with -Werror again.
* gnu/packages/admin.scm (thermald)[arguments]: Remove substitution,
and a #t whilst we're here.
2021-06-05 18:29:54 +02:00
Tobias Geerinckx-Rice 9412762f9b
gnu: thermald: Update to 2.4.5.
* gnu/packages/admin.scm (thermald): Update to 2.4.5.
2021-06-05 18:29:54 +02:00
Nicolas Goaziou de1b8f7143
gnu: wireshark: Update to 3.4.6.
* gnu/packages/networking.scm (wireshark): Update to 3.4.6.
2021-06-05 17:48:42 +02:00
Nicolas Goaziou 38eaba9a8e
gnu: giac: Update to 1.7.0-11.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-11.
2021-06-05 17:24:13 +02:00
Carl Dong 20d9535e1b
gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-05 11:21:11 -04:00
Nicolas Goaziou 9da90938c6
gnu: rosegarden: Update to 21.06.
* gnu/packages/music.scm (rosegarden): Update to 21.06.
2021-06-05 16:08:34 +02:00
Nicolas Goaziou bb7706dcdd
gnu: emacs-undercover: Update to 0.8.1.
* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.8.1.
2021-06-05 15:57:59 +02:00
Nicolas Goaziou bdab742322
gnu: emacs-all-the-icons: Update to 5.0.0.
* gnu/packages/emacs-xyz.scm (emacs-all-the-icons): Update to 5.0.0.
2021-06-05 15:56:20 +02:00
Nicolas Goaziou fb41cc6c41
gnu: emacs-leaf: Update to 4.4.8.
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.8.
2021-06-05 15:52:52 +02:00
Adam Kandur 11f18341db
gnu: Add emacs-vscode-dark-plus.
* gnu/packages/emacs-xyz.scm (emacs-vscode-dark-plus): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 15:47:52 +02:00
Alexandr Vityazev 087fbcfe48
gnu: Add emacs-flymake-kondor.
* gnu/packages/emacs-xyz.scm (emacs-flymake-kondor): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:25:30 +02:00
Alexandr Vityazev 00f8451ea1
gnu: Add emacs-flymake-quickdef.
* gnu/packages/emacs-xyz.scm (emacs-flymake-quickdef): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:23:28 +02:00
Alexandr Vityazev 0a4b2da0ed
gnu: Add emacs-anakondo.
* gnu/packages/emacs-xyz.scm (emacs-anakondo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:10:54 +02:00
Alexandr Vityazev c6d4f974bc
gnu: Add emacs-clojure-snippets.
* gnu/packages/emacs-xyz.scm (emacs-clojure-snippets): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:00:42 +02:00
Alexandr Vityazev fec881eac3
gnu: Add emacs-kibit-helper.
* gnu/packages/emacs-xyz.scm (emacs-kibit-helper): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:50:10 +02:00
Xinglu Chen b61ee34c9d
gnu: Add emacs-djvu3.
* gnu/packages/emacs-xyz.scm (emacs-djvu3): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:43:36 +02:00
Xinglu Chen 612e5b8528
gnu: Add emacs-hg-histedit.
* gnu/packages/emacs-xyz.scm (emacs-hg-histedit): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:41:42 +02:00
Xinglu Chen bbf54272c6
gnu: Add emacs-hgignore-mode.
* gnu/packages/emacs-xyz.scm (emacs-hgignore-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:39:30 +02:00
Pierre Neidhardt ac9da35707
gnu: emacs-webfeeder: Update to 1.1.2.
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): Update to 1.1.2.
2021-06-05 12:56:53 +02:00
Guillaume Le Vaillant f9a7a365ed
gnu: liquid-dsp: Remove unused input.
* gnu/packages/radio.scm (liquid-dsp)[inputs]: Remove fftw.
2021-06-05 11:45:47 +02:00
Guillaume Le Vaillant 3a8d0eff9e
gnu: liquid-dsp: Remove static library.
* gnu/packages/radio.scm (liquid-dsp)[arguments]: Add 'delete-static-library'
  phase.
2021-06-05 11:43:00 +02:00
Guillaume Le Vaillant 573f777495
gnu: liquid-dsp: Add support for more error correction codes.
* gnu/packages/radio.scm (liquid-dsp)[inputs]: Add libfec.
2021-06-05 11:38:09 +02:00
Guillaume Le Vaillant ba9cbb6612
gnu: Add libfec.
* gnu/packages/radio.scm (libfec): New variable.
2021-06-05 11:23:10 +02:00
Ricardo Wurmus f9ef881e4d
gnu: python-pypandoc: Use patched texlive-amsfonts.
* gnu/packages/python-xyz.scm (python-pypandoc)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus 45aae518e7
gnu: python-ipython-documentation: Use patched texlive-amsfonts.
* gnu/packages/python-xyz.scm (python-ipython-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus ace97406f2
gnu: python-matplotlib-documentation: Use patched texlive-amsfonts.
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus d71751526f
gnu: python-numpy-documentation: Use patched texlive-amsfonts.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus af8a5285d2
gnu: libosmo-dsp: Use patched texlive-amsfonts.
* gnu/packages/radio.scm (libosmo-dsp)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus 232bdb900d
gnu: gnuradio: Use patched texlive-amsfonts.
* gnu/packages/radio.scm (gnuradio)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus 41bbbd53d2
gnu: asymptote: Use patched texlive-amsfonts.
Fixes <https://bugs.gnu.org/39101>.

* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus 11caa5f68a
gnu: emacs-auctex: Use patched texlive-amsfonts.
* gnu/packages/emacs-xyz.scm (emacs-auctex)[inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus 701a115533
gnu: dblatex: Use patched texlive-amsfonts.
* gnu/packages/docbook.scm (dblatex)[inputs]: Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus c2b6d36b66
gnu: pari-gp: Use patched texlive-amsfonts.
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:13 +02:00
Pierre Neidhardt c128d4f931
gnu: sbcl-cmd: Update to 20210531.
* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20210531.
2021-06-05 09:24:59 +02:00
Ricardo Wurmus 8f12002f6e
gnu: r-sushi: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.30.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus abe7628a05
gnu: r-guitar: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.8.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus 3a5642d72e
gnu: r-chromstar: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.18.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus 3e2052e7da
gnu: r-snpstats: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.42.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus 8fa5a4d753
gnu: r-pathview: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.32.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus b4cea45e7c
gnu: r-ldblock: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus 2860208c42
gnu: r-kegggraph: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.52.0.
[propagated-inputs]: Add r-rgraphviz.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus a06d13be09
gnu: r-gwascat: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.24.0.
[propagated-inputs]: Add r-annotationhub.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus bdfa1178b9
gnu: r-gviz: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 46b7d19dcc
gnu: r-ggbio: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.40.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus bd6d0007d9
gnu: r-erma: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.8.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 8ad54dc134
gnu: r-catalyst: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 2fe8673263
gnu: r-msmstests: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus e501608db3
gnu: r-msmseda: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus b5a387745a
gnu: r-biocio: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.2.0.
[propagated-inputs]: Remove r-genomicranges and r-rcurl.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus aaf095825b
gnu: r-mscoreutils: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.4.0.
[propagated-inputs]: Add r-clue.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 47e291df84
gnu: r-delayedmatrixstats: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.0.
[propagated-inputs]: Remove r-biocparallel and r-hdf5array.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 360477c202
gnu: r-sparsematrixstats: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 015ba64bc0
gnu: r-scran: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.20.1.
[propagated-inputs]: Remove r-biocneighbors; add r-metapod.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus d9755a22f6
gnu: r-scater: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.0.
[propagated-inputs]: Add r-beachmat, r-rcolorbrewer, and r-rtsne.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 851894f8da
gnu: r-scuttle: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus b21a73c00b
gnu: r-singlecellexperiment: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.14.1.
[propagated-inputs]: Add r-delayedarray and r-genomicranges.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus 71e392966a
gnu: r-chromvar: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 56a2dcfdc7
gnu: r-motifmatchr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 0b6b42b6c4
gnu: r-tfbstools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.30.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus a92a277873
gnu: r-cner: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.28.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 370d020e88
gnu: r-beachmat: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.0.
[propagated-inputs]: Add r-rcpp.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus dbb929bf4a
gnu: r-hitc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.36.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 914bd41da9
gnu: r-fithic: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.18.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 64b03c66ad
gnu: r-rgraphviz: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.36.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 5565b8bada
gnu: r-s4vectors: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus a78daaa572
gnu: r-preprocesscore: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.54.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus a9f203ba6c
gnu: r-icens: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.64.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 3b19239c0f
gnu: r-m3c: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 06dd2fd625
gnu: r-rgreat: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.24.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus 5d611d3f15
gnu: r-pcatools: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.4.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus db46064043
gnu: r-biodist: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.64.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 36f51f8afe
gnu: r-biocworkflowtools: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus e828fa21bb
gnu: r-biocset: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus e9e4f65dc1
gnu: r-biocpkgtools: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.1.
[propagated-inputs]: Remove r-rappdirs.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 2023951c8e
gnu: r-biocor: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.16.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 4faded238e
gnu: r-bioconcotk: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus e7b465e81b
gnu: r-multiassayexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 37f824c5e7
gnu: r-grohmm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.26.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 28613e1000
gnu: r-experimenthub: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.0.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus 1e2c0e824c
gnu: r-biocviews: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.60.0.
2021-06-05 09:12:55 +02:00