4f82931de4
gnu: r-mlinterfaces: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
2020-12-09 12:12:25 +01:00
3fd84a461d
gnu: r-clusterprofiler: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
2020-12-09 12:12:25 +01:00
eb3d17eb99
gnu: r-enrichplot: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
2020-12-09 12:12:25 +01:00
b7d1ea7bfa
gnu: Add r-shadowtext.
...
* gnu/packages/cran.scm (r-shadowtext): New variable.
2020-12-09 12:12:25 +01:00
aeb1d56f8f
gnu: r-dose: Update to 3.16.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
2020-12-09 12:12:25 +01:00
d68a9ffa68
gnu: r-fgsea: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
2020-12-09 12:12:25 +01:00
7dabc6298f
gnu: r-sigpathway: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
2020-12-09 12:12:25 +01:00
33c905b9c0
gnu: r-anota: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
2020-12-09 12:12:24 +01:00
b2084e4d21
gnu: r-gosemsim: Update to 2.16.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
2020-12-09 12:12:24 +01:00
9813d24ddf
gnu: r-heatplus: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
2020-12-09 12:12:24 +01:00
67837d4afe
gnu: r-varianttools: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
2a1a6d74d6
gnu: r-ioniser: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
37e09611f2
gnu: r-linnorm: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
50c5fee6b5
gnu: r-bumphunter: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
0fd830feaa
gnu: r-siggenes: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
2020-12-09 12:12:24 +01:00
e89966e977
gnu: r-illuminaio: Update to 0.32.0.
...
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
2020-12-09 12:12:24 +01:00
5c4edeef02
gnu: r-geoquery: Update to 2.58.0.
...
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
2020-12-09 12:12:24 +01:00
bde9dc5b97
gnu: r-scone: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
2020-12-09 12:12:24 +01:00
8396c45eda
gnu: r-noiseq: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
2020-12-09 12:12:24 +01:00
38bc0bf808
gnu: r-monocle: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
2020-12-09 12:12:24 +01:00
532b106856
gnu: r-mast: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
2020-12-09 12:12:24 +01:00
e26b5eefda
gnu: r-icobra: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
95b1f3507a
gnu: r-ihw: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
378d67c950
gnu: r-lpsymphony: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
37da451316
gnu: r-karyoploter: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
2020-12-09 12:12:23 +01:00
939c888dac
gnu: r-ebseq: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
850f4c2a36
gnu: r-dnacopy: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
2020-12-09 12:12:23 +01:00
43d8db0462
gnu: r-copynumber: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
ff4d080422
gnu: r-chipexoqual: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
2020-12-09 12:12:23 +01:00
967fc58392
gnu: r-savr: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
2020-12-09 12:12:23 +01:00
4217307fb3
gnu: r-destiny: Update to 3.4.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
2020-12-09 12:12:23 +01:00
bbae34aae7
gnu: r-biocneighbors: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
2020-12-09 12:12:23 +01:00
a55b1622c5
gnu: r-ruvseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
2020-12-09 12:12:23 +01:00
874a774fcc
gnu: r-dnabarcodes: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
41d6b41feb
gnu: r-inspect: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
1c9bdfcf3c
gnu: r-plgem: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
2020-12-09 12:12:22 +01:00
0ef40b23b6
gnu: r-rots: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
2020-12-09 12:12:22 +01:00
3dab4570fa
gnu: r-glimma: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
2020-12-09 12:12:22 +01:00
c97bcfbd78
gnu: r-goseq: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
2020-12-09 12:12:22 +01:00
d27dfbf7f9
gnu: r-ctc: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
2020-12-09 12:12:22 +01:00
3813c9fe56
gnu: r-riboseqr: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
2020-12-09 12:12:22 +01:00
03b655c524
gnu: r-riboprofiling: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
63572b0c12
gnu: r-bayseq: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
2020-12-09 12:12:22 +01:00
3b6484097c
gnu: r-qdnaseq: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
2020-12-09 12:12:22 +01:00
724000356e
gnu: r-cghcall: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
2020-12-09 12:12:22 +01:00
ee052d05f1
gnu: r-cghbase: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.50.0.
2020-12-09 12:12:22 +01:00
6e6c627230
gnu: r-marray: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.68.0.
2020-12-09 12:12:22 +01:00
d068d96743
gnu: r-chippeakanno: Update to 3.24.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.0.
2020-12-09 12:12:21 +01:00
f519b4dc01
gnu: r-graph: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.68.0.
2020-12-09 12:12:21 +01:00
1e6920c521
gnu: r-multtest: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.46.0.
2020-12-09 12:12:21 +01:00
341ebaaa01
gnu: r-diffbind: Update to 3.0.7.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
2020-12-09 12:12:21 +01:00
6e396c4bff
gnu: Add r-greylistchip.
...
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
2020-12-09 12:12:21 +01:00
c84762c446
gnu: Add r-ashr.
...
* gnu/packages/cran.scm (r-ashr): New variable.
2020-12-09 12:12:21 +01:00
755d16a3b0
gnu: Add r-mixsqp.
...
* gnu/packages/cran.scm (r-mixsqp): New variable.
2020-12-09 12:12:21 +01:00
deda2319f7
gnu: Add r-etrunct.
...
* gnu/packages/cran.scm (r-etrunct): New variable.
2020-12-09 12:12:21 +01:00
a7f4a8b4d0
gnu: Add r-invgamma.
...
* gnu/packages/cran.scm (r-invgamma): New variable.
2020-12-09 12:12:21 +01:00
3b399e514f
gnu: Add r-apeglm.
...
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
2020-12-09 12:12:21 +01:00
a0df9b93ef
gnu: Add r-rcppnumerical.
...
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
2020-12-09 12:12:21 +01:00
e9b60a2901
gnu: r-qvalue: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
2020-12-09 12:12:21 +01:00
9af6fdf861
gnu: r-oligo: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
2020-12-09 12:12:21 +01:00
464df5ccbb
gnu: r-oligoclasses: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
2020-12-09 12:12:21 +01:00
d72c4c98c8
gnu: r-geneplotter: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
2020-12-09 12:12:20 +01:00
c03c76344e
gnu: r-reportingtools: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
2020-12-09 12:12:20 +01:00
d1ff3604b7
gnu: r-regioner: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
2020-12-09 12:12:20 +01:00
fa7578b32f
gnu: r-hpar: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
2020-12-09 12:12:20 +01:00
7d56302332
gnu: r-annotate: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
2020-12-09 12:12:20 +01:00
8e6a2c328f
gnu: r-affxparser: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
a92219b45f
gnu: r-affycoretools: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
3e82f9ccaf
gnu: r-affycontam: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
2020-12-09 12:12:20 +01:00
fa2d16cc27
gnu: r-affycompatible: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
2020-12-09 12:12:20 +01:00
c472549f67
gnu: r-affycomp: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
2020-12-09 12:12:20 +01:00
aa311eaa74
gnu: r-biocgenerics: Update to 0.36.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
2020-12-09 12:12:20 +01:00
70ab99096d
gnu: r-biocversion: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
2020-12-09 12:12:20 +01:00
a3e2e53837
gnu: r-cummerbund: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
2020-12-09 12:12:20 +01:00
5ef637ddc7
gnu: r-coverageview: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
2020-12-09 12:12:20 +01:00
25f4e6520e
gnu: r-ideoviz: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
2020-12-09 12:12:20 +01:00
533935ccf7
services: science.scm: Add missing copyright headers.
...
This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f76
2020-12-09 12:55:02 +02:00
53c480006b
gnu: monero-gui: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
5560bd7b6b
gnu: monero: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
8e2aad26ae
gnu: Add lemonbar-xft.
...
* gnu/packages/wm.scm (lemonbar-xft): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 09:10:33 +00:00
9941036559
gnu: Add go-github-com-aws-sdk.
...
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
016501aec6
gnu: Add go-github-com-jmespath-go-jmespath.
...
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
f7c2896e52
gnu: Add go-github-com-go-sql-driver-mysql.
...
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:31 +02:00
2b0185a74b
gnu: linux-libre 4.14: Update to 4.14.211.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211.
(linux-libre-4.14-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
a2eae5ec4a
gnu: linux-libre 4.19: Update to 4.19.162.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162.
(linux-libre-4.19-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
66b1b55148
gnu: linux-libre 5.4: Update to 5.4.82.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82.
(linux-libre-5.4-pristine-source): Update hash.
2020-12-09 01:08:14 -05:00
54f777ca4e
gnu: linux-libre: Update to 5.9.13.
...
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13.
(linux-libre-5.9-pristine-source): Update hash.
2020-12-09 01:08:09 -05:00
02b21f35cc
gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].
...
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i
(openssl-1.1.1g): Replace with ...
(openssl-1.1.1i): ... new variable.
2020-12-08 19:48:09 -05:00
456421fc0f
gnu: guix: Update to 799f066.
...
* gnu/packages/package-management.scm (guix): Update to 799f066
2020-12-08 23:38:04 +01:00
4a98735297
gnu: autotools: Add version 2.70.
...
* gnu/packages/autotools.scm (autoconf): Rename to...
(autoconf-2.69): ... this.
(autoconf): Define as an alias for AUTOCONF-2.69.
(autoconf-2.70): New variable.
2020-12-08 22:28:00 +01:00
20e5658c04
gnu: ocaml-menhir: Update to 20200211.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211.
[build-system]: Switch from gnu to dune.
[arguments]: Remove phases and make-flags.
[native-inputs]: Remove field.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:18:11 +00:00
2d1a621b8d
gnu: mruby: Update to 2.1.2.
...
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
2020-12-08 22:09:30 +02:00
8a55a3994c
gnu: Add mypaint.
...
* gnu/packages/image.scm (mypaint): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:06:38 +00:00
c9c3569ad9
gnu: libmypaint: Update to 1.6.1.
...
Needed by mypaint@2.0.1.
* gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
2020-12-08 20:06:34 +00:00
e1d3b07ffc
gnu: isync: Use OpenSSL 1.1.
...
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
2020-12-08 13:25:27 -05:00
adbb62f16e
gnu: fcitx5-material-color-theme: Add source file-name.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add
file-name field.
2020-12-08 18:14:31 +02:00
af34f757ce
gnu: Add fcitx5-material-color-theme.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
ac1c7530d8
gnu: Add fcitx5-configtool.
...
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
9a23698ecd
gnu: Add fcitx5-chinese-addons.
...
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
d4aca38b50
gnu: Add fcitx5-gtk.
...
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
zimoun
Roel Janssen
Efraim Flashner
Guillaume Le Vaillant
elaexuotee@wilsonb.com
Ryan Prior
Leo Famulari
Ludovic Courtès
Vincent Legoll
L p R n d n
Christopher Baines
Zhu Zihao