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3468 Commits (ec08e7a533f7298311908a6adb746b0b6ca90be4)

Author SHA1 Message Date
Ricardo Wurmus b51001141b
gnu: r-dnacopy: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 96508fa43a
gnu: r-glmgampoi: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus c47fd0c47c
gnu: r-diffbind: Update to 3.8.3.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus a13f5a52d0
gnu: r-oligo: Update to 1.62.1.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 9e18e3a372
gnu: r-tximport: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.26.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus dc6f9ab3ab
gnu: r-scmap: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 5fc338637b
gnu: r-lfa: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 53fb765c85
gnu: r-impute: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus b035f07cc2
gnu: r-genomicranges: Update to 1.50.2.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus a4362f4599
gnu: r-genomicfeatures: Update to 1.50.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.3.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 86fcb20aa8
gnu: r-genomeinfodb: Update to 1.34.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.4.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus a71a89ac39
gnu: r-genefilter: Update to 1.80.2.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 6af97fcc0e
gnu: r-edger: Update to 3.40.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus db6ae57157
gnu: r-deseq2: Update to 1.38.2.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.2.
[propagated-inputs]: Remove r-genefilter; add r-matrixstats.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 74be5ec3e8
gnu: r-biocparallel: Update to 1.32.4.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.4.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus e757936b96
gnu: r-deconvr: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.3.
[propagated-inputs]: Add r-minfi.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus d2666970d1
gnu: r-damefinder: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.10.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus 72f9c4312b
gnu: r-bandits: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus d7fda90354
gnu: r-bambu: Update to 3.0.5.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.5.
2022-12-20 12:09:31 +01:00
Ricardo Wurmus 64ed2e8380
gnu: r-ancombc: Update to 2.0.2.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.2.
2022-12-20 12:09:31 +01:00
zimoun 97ef08c207
gnu: Add r-cardelino.
* gnu/packages/bioconductor.scm (r-cardelino): New variable.
2022-12-19 19:22:04 +01:00
Mădălin Ionel Patrașcu b9014985be
gnu: Add r-asics.
* gnu/packages/bioconductor.scm (r-asics): New variable.
2022-12-12 18:41:13 +01:00
Mădălin Ionel Patrașcu 061ce5500a
gnu: Add r-pepsnmr.
* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
2022-12-12 18:40:46 +01:00
Mădălin Ionel Patrașcu e0746ee4c4
gnu: Add r-animalcules.
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
2022-12-12 17:30:05 +01:00
Mădălin Ionel Patrașcu 5fb5af5658
gnu: Add r-amplican.
* gnu/packages/bioconductor.scm (r-amplican): New variable.
2022-12-12 15:50:28 +01:00
Mădălin Ionel Patrașcu 8363719476
gnu: Add r-harshlight.
* gnu/packages/bioconductor.scm (r-harshlight): New variable.
2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu 85d5ce4901
gnu: Add r-altcdfenvs.
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu 97b36ca4d3
gnu: Add r-makecdfenv.
* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu a712c07d6a
gnu: Add r-metaneighbor.
* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
2022-12-01 11:41:05 +01:00
Ricardo Wurmus cef2cbb295
gnu: r-biodb: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.6.1.
2022-11-30 11:28:48 +01:00
Ricardo Wurmus 95e62fb993
gnu: r-biocparallel: Update to 1.32.3.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.3.
2022-11-30 11:28:48 +01:00
Ricardo Wurmus 6b825d9cb9
gnu: r-alpine: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-alpine): Update to 1.24.0.
2022-11-30 11:28:44 +01:00
Ricardo Wurmus 08fb5279a5
gnu: r-nmf: Update to 0.25.
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.25.
[propagated-inputs]: Remove r-pkgmaker; add r-codetools.
2022-11-29 15:27:20 +01:00
Ricardo Wurmus 059d38dc3f
gnu: Add r-glmgampoi.
* gnu/packages/bioconductor.scm (r-glmgampoi): New variable.
2022-11-28 11:23:49 +01:00
Ricardo Wurmus c29d999a34
gnu: r-ancombc: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus 139da51753
gnu: Add r-mia.
* gnu/packages/bioconductor.scm (r-mia): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus 90d8ac279f
gnu: Add r-treesummarizedexperiment.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
2022-11-24 18:02:15 +01:00
Mădălin Ionel Patrașcu 8d3bd8e4b0
gnu: Add r-ancombc.
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus fa59a22140
gnu: r-aims: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
2022-11-24 15:36:18 +01:00
Mădălin Ionel Patrașcu 2e85d26ebb
gnu: Add r-aims.
* gnu/packages/bioconductor.scm (r-aims): New variable.
2022-11-24 15:35:38 +01:00
Ricardo Wurmus 6f39e16124
gnu: r-alevinqc: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
2022-11-24 15:28:15 +01:00
Mădălin Ionel Patrașcu 5dc82a7f8b
gnu: Add r-alevinqc.
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
2022-11-24 15:22:28 +01:00
Ricardo Wurmus 610616d448
gnu: r-alphabeta: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
2022-11-24 15:13:50 +01:00
Mădălin Ionel Patrașcu 6c7f0849c1
gnu: Add r-alphabeta.
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
2022-11-24 15:09:13 +01:00
Ricardo Wurmus c706a0a2af
gnu: r-asafe: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
2022-11-24 15:02:41 +01:00
Mădălin Ionel Patrașcu 01124e5a10
gnu: Add r-asafe.
* gnu/packages/bioconductor.scm (r-asafe): New variable.
2022-11-24 15:02:10 +01:00
Ricardo Wurmus c2cba91ac9
gnu: r-arrayexpress: Update to 1.57.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
2022-11-24 14:54:41 +01:00
Mădălin Ionel Patrașcu 13e8930efb
gnu: Add r-arrayexpress.
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
2022-11-24 14:53:09 +01:00
Ricardo Wurmus f43a41d196
gnu: r-scuttle: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus a2ad5b53bf
gnu: r-rgreat: Update to 2.0.2.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus 8bfac375aa
gnu: r-bioccheck: Update to 1.34.2.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus f9747ecc2c
gnu: r-dose: Update to 3.24.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus a5ee462b7a
gnu: r-shortread: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus 3bc54ddeab
gnu: r-chipseeker: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus d3696e71a9
gnu: r-deconvr: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus 04340b27ba
gnu: r-bambu: Update to 3.0.2.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
2022-11-24 12:32:10 +01:00
zimoun 54afdb3de1
gnu: r-phyloseq: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0.
2022-11-24 12:32:09 +01:00
zimoun 9988c60ea3
gnu: r-tximeta: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0.
2022-11-24 12:32:09 +01:00
zimoun 5140be4c81
gnu: r-tricycle: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0.
2022-11-24 12:32:09 +01:00
zimoun 7a33311bfd
gnu: r-tcgabiolinks: Update to 2.25.3.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3.
2022-11-24 12:32:09 +01:00
zimoun dde0da5a95
gnu: r-biscuiteer: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0.
2022-11-24 12:32:09 +01:00
zimoun 926fe78f73
gnu: r-omnipathr: Update to 3.5.25.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25.
[propagated-inputs]: Add r-rmarkdown and r-rvest.
2022-11-24 12:32:08 +01:00
zimoun 3f58454739
gnu: r-omicade4: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.38.0.
2022-11-24 12:32:08 +01:00
zimoun e524c12e06
gnu: r-dmrseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.0.
2022-11-24 12:32:08 +01:00
zimoun 95792cda89
gnu: r-dada2: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.26.0.
2022-11-24 12:32:08 +01:00
zimoun c2c91d9dfe
gnu: r-bsseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.34.0.
2022-11-24 12:32:08 +01:00
zimoun 3b8df103f7
gnu: r-biotmle: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.22.0.
2022-11-24 12:32:08 +01:00
zimoun 3ed0a63106
gnu: r-biotip: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.12.0.
2022-11-24 12:32:08 +01:00
zimoun f230df5f4f
gnu: r-bioqc: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.26.0.
2022-11-24 12:32:07 +01:00
zimoun 219b98fee9
gnu: r-bionetstat: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.18.0.
2022-11-24 12:32:07 +01:00
zimoun 01fb7c35e7
gnu: r-bionet: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.58.0.
2022-11-24 12:32:07 +01:00
zimoun 1118d6e856
gnu: r-bionero: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.0.
2022-11-24 12:32:07 +01:00
zimoun 858d9ccd9b
gnu: r-biomvrcns: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.38.0.
2022-11-24 12:32:07 +01:00
zimoun c0412736d8
gnu: r-biomvcclass: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.66.0.
2022-11-24 12:32:07 +01:00
zimoun 3879ddbdb9
gnu: r-mvcclass: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.72.0.
2022-11-24 12:32:07 +01:00
zimoun 4875f37cb6
gnu: r-biomformat: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.26.0.
2022-11-24 12:32:06 +01:00
zimoun ffd5e53e87
gnu: r-biodb: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.6.0.
2022-11-24 12:32:06 +01:00
zimoun efc663040b
gnu: r-biocdockermanager: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.10.0.
2022-11-24 12:32:06 +01:00
zimoun 4fcf1f08ec
gnu: r-biocthis: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.1.
2022-11-24 12:32:06 +01:00
zimoun 3aea2c40d8
gnu: r-basilisk: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.10.2.
2022-11-24 12:32:06 +01:00
zimoun f5a514b605
gnu: r-basilisk-utils: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.10.0.
2022-11-24 12:32:06 +01:00
zimoun 925642f837
gnu: r-dir-expiry: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.6.0.
2022-11-24 12:32:06 +01:00
zimoun 727cd07d1a
gnu: r-genetclassifier: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.38.0.
2022-11-24 12:32:05 +01:00
zimoun dbaad2365a
gnu: r-minet: Update to 3.56.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.56.0.
2022-11-24 12:32:05 +01:00
zimoun 8ba466faff
gnu: r-biobtreer: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.10.0.
2022-11-24 12:32:05 +01:00
zimoun 009ac4e3a9
gnu: r-bgeedb: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.24.0.
2022-11-24 12:32:05 +01:00
zimoun 3912f43996
gnu: r-bgeecall: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.14.0.
2022-11-24 12:32:05 +01:00
zimoun 81cea8424d
gnu: r-beclear: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.14.0.
[propagated-inputs]: Add r-ids.
2022-11-24 12:32:05 +01:00
zimoun 5604f64c34
gnu: r-megadepth: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.8.0.
2022-11-24 12:32:05 +01:00
zimoun 3823aa40a3
gnu: r-ballgown: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.30.0.
2022-11-24 12:32:04 +01:00
zimoun 3ca58a4ff3
gnu: r-guitar: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.14.0.
2022-11-24 12:32:04 +01:00
zimoun 5950a171ba
gnu: r-chromstar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.24.0.
2022-11-24 12:32:04 +01:00
zimoun 1ff0bc4e7b
gnu: r-snpstats: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.48.0.
2022-11-24 12:32:04 +01:00
zimoun ddc7edf0b3
gnu: r-pathview: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.38.0.
2022-11-24 12:32:04 +01:00
zimoun 1315c532de
gnu: r-ldblock: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.28.0.
2022-11-24 12:32:04 +01:00
zimoun db290bf5b9
gnu: r-kegggraph: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.0.
2022-11-24 12:32:04 +01:00
zimoun b6e56ceeb9
gnu: r-gwascat: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.30.0.
2022-11-24 12:32:03 +01:00
zimoun 5f3ff4f884
gnu: r-gviz: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.42.0.
2022-11-24 12:32:03 +01:00
zimoun 34867ac9cf
gnu: r-ggbio: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.46.0.
2022-11-24 12:32:03 +01:00
zimoun 77f2aa3fa4
gnu: r-erma: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.14.0.
2022-11-24 12:32:03 +01:00