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3468 Commits (ec08e7a533f7298311908a6adb746b0b6ca90be4)

Author SHA1 Message Date
Ricardo Wurmus 0b78144688
gnu: r-abn: Update to 2.7-3.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-3.
2023-02-18 19:56:30 +01:00
Ricardo Wurmus 854fea4618
gnu: r-wgcna: Update to 1.72-1.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-1.
2023-02-18 19:56:30 +01:00
Mădălin Ionel Patrașcu e7b4b691da
gnu: Add r-adacgh2.
* gnu/packages/bioconductor.scm (r-adacgh2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-02-07 10:30:00 +01:00
Mădălin Ionel Patrașcu d451470b5d
gnu: Add r-beadarraysnp.
* gnu/packages/bioconductor.scm (r-beadarraysnp): New variable.
2023-02-07 10:30:00 +01:00
Mădălin Ionel Patrașcu 4fb1703a0a
gnu: Add r-quantsmooth.
* gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu b4d90dfdb8
gnu: Add r-snapcgh.
* gnu/packages/bioconductor.scm (r-snapcgh): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu 372843576d
gnu: Add r-tilingarray.
* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu c738ab4805
gnu: Add r-manor.
* gnu/packages/bioconductor.scm (r-manor): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu 8dc953fe5d
gnu: Add r-italics.
* gnu/packages/bioconductor.scm (r-italics): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu b065772152
gnu: Add r-pd-mapping50k-xba240.
* gnu/packages/bioconductor.scm (r-pd-mapping50k-xba240): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu c8734d7873
gnu: Add r-italicsdata.
* gnu/packages/bioconductor.scm (r-italicsdata): New variable.
2023-02-07 10:29:59 +01:00
Mădălin Ionel Patrașcu 27178151c3
gnu: Add r-glad.
* gnu/packages/bioconductor.scm (r-glad): New variable.
2023-02-07 10:29:59 +01:00
Navid Afkhami 7c798cd9e4
gnu: Add r-bcellviper.
* gnu/packages/bioconductor.scm (r-bcellviper): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-02-03 16:05:51 +01:00
Mădălin Ionel Patrașcu ac32f93df3
gnu: Add r-anvil.
* gnu/packages/bioconductor.scm (r-anvil): New variable.
2023-01-22 09:16:18 +01:00
Ricardo Wurmus 9fc3e4fb26
gnu: r-speaq: Fix description.
* gnu/packages/bioconductor.scm (r-speaq)[description]: Reword.
2023-01-22 09:12:50 +01:00
Mădălin Ionel Patrașcu 3d9516344e
gnu: Add r-alpsnmr.
* gnu/packages/bioconductor.scm (r-alpsnmr): New variable.
2023-01-22 08:56:51 +01:00
Mădălin Ionel Patrașcu b374a45eb0
gnu: Add r-speaq.
* gnu/packages/bioconductor.scm (r-speaq): New variable.
2023-01-22 08:56:51 +01:00
Navid Afkhami 072f605c12
gnu: Add r-scds.
* gnu/packages/bioconductor.scm (r-scds): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-01-20 11:01:31 +01:00
Simon Tournier c31d8adcb0
gnu: Add r-numbat.
* gnu/packages/bioconductor.scm (r-numbat): New variable.
2023-01-20 10:44:28 +01:00
Simon Tournier f145afd16f
gnu: Add r-scistreer.
* gnu/packages/bioconductor.scm (r-scistreer): New variable.
2023-01-20 10:44:27 +01:00
Mădălin Ionel Patrașcu fda2d75d8d
gnu: Add r-breakpointr.
* gnu/packages/bioconductor.scm (r-breakpointr): New variable.
2023-01-18 22:43:58 +01:00
Mădălin Ionel Patrașcu 4f7ef3f528
gnu: Add r-breakpointrdata.
* gnu/packages/bioconductor.scm (r-breakpointrdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-01-18 22:43:58 +01:00
Mădălin Ionel Patrașcu 3e1c85b7ec
gnu: Add r-maser.
* gnu/packages/bioconductor.scm (r-maser): New variable.
2023-01-14 08:13:54 +01:00
Ricardo Wurmus 8423ca9da8
gnu: r-biocset: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus 8ee7f8df76
gnu: r-biocviews: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus d41e85678a
gnu: r-variancepartition: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1.
[propagated-inputs]: Add r-remacor.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus 850638df5a
gnu: r-flowworkspace: Update to 4.10.1.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1.
[propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice,
r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add
r-cpp11.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus 3ac0f4e62c
gnu: r-batchelor: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus aca59da931
gnu: r-msnbase: Update to 2.24.2.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus f5629558b1
gnu: r-genomeinfodb: Update to 1.34.6.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus b37a9bfba6
gnu: r-bsgenome: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus 3072990b03
gnu: r-biocparallel: Update to 1.32.5.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
2023-01-09 23:07:58 +01:00
Ricardo Wurmus fd4ca4a266
gnu: r-kegggraph: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.3.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus cfa8d448bc
gnu: r-scran: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus 71c115fd94
gnu: r-scuttle: Update to 1.8.3.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.3.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus c4cbfa40d8
gnu: r-chromvar: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus 68701917b8
gnu: r-s4vectors: Update to 0.36.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus e895da0406
gnu: r-preprocesscore: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus 18468f775e
gnu: r-biocviews: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.1.
[native-inputs]: Add r-knitr.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus fc617e70e6
gnu: r-rcistarget: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.18.2.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus 031dbcbd0e
gnu: r-opencyto: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.10.1.
[propagated-inputs]: Remove r-clue, r-flowstats, r-gtools, r-ks, r-lattice, r-mass,
r-plyr, r-r-utils, r-rcpp, and r-rrcov; add r-bh and r-cpp11.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus 7edcbf84bf
gnu: r-ggcyto: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.26.4.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 5ac36a82e8
gnu: r-rsubread: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 90b10b37e8
gnu: r-iclusterplus: Update to 1.34.2.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 7f45db2df8
gnu: r-aucell: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.20.2.
[propagated-inputs]: Add r-matrix.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus da24c1c949
gnu: r-clusterexperiment: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 2e10df101f
gnu: r-enrichplot: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 7205384533
gnu: r-sigpathway: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus ceffbc313f
gnu: r-linnorm: Update to 2.22.1.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus 2eb81c0888
gnu: r-lpsymphony: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.2.
2022-12-20 12:09:33 +01:00