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2801 Commits (ec23d7caa871471ad9425a21b34e1f9692a524d4)

Author SHA1 Message Date
Mădălin Ionel Patrașcu ec23d7caa8
gnu: Add r-antiprofiles. 
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:22 +02:00
Mădălin Ionel Patrașcu 3109d4a30e
gnu: Add r-annmap. 
* gnu/packages/bioconductor.scm (r-annmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu f004033b47
gnu: Add r-anf. 
* gnu/packages/bioconductor.scm (r-anf): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu 4c294ae7fb
gnu: Add r-anaquin. 
* gnu/packages/bioconductor.scm (r-anaquin): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu c6d792f34c
gnu: Add r-amaretto. 
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
 2022-06-30 15:35:27 +02:00
Mădălin Ionel Patrașcu dd74da6190
gnu: Add r-amountain. 
* gnu/packages/bioconductor.scm (r-amountain): New variable.
 2022-06-30 15:29:45 +02:00
Ricardo Wurmus 6e333213d3
gnu: r-metap: Update to 1.8. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.8.
[propagated-inputs]: Add r-mathjaxr and r-qqconf.
 2022-06-30 15:17:58 +02:00
Ricardo Wurmus fce6aeba7e
gnu: r-nbpseq: Update to 0.3.1. 
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
 2022-06-13 14:21:46 +02:00
Ricardo Wurmus 37378829bc
gnu: r-restfulr: Update to 0.0.14. 
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
 2022-06-13 14:21:42 +02:00
Ricardo Wurmus 0006a9a83a
gnu: Add r-deconvr. 
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
 2022-06-12 22:51:23 +02:00
Ricardo Wurmus 541823b318
gnu: r-hdf5array: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus a76b657d93
gnu: r-rsubread: Update to 2.10.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus 41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 640b45d73c
gnu: r-monocle: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 7a344aa9e2
gnu: r-keggrest: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 15e26f97d9
gnu: r-biocparallel: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus f5899fe58b
gnu: r-deepsnv: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
 2022-06-12 11:16:23 +02:00
Ricardo Wurmus bfcae1efbb
gnu: r-batchelor: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
 2022-05-30 15:16:35 +02:00
Ricardo Wurmus e640da33f3
Merge branch 'wip-r' 2022-05-29 11:49:03 +02:00
Ricardo Wurmus 89e9262012
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
 2022-05-29 11:44:09 +02:00
Mădălin Ionel Patrașcu a5f4c03df1
gnu: Add r-scmap. 
* gnu/packages/bioconductor.scm (r-scmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-29 00:43:05 +02:00
Ricardo Wurmus 66bfe55848
gnu: Add r-msdata. 
* gnu/packages/bioconductor.scm (r-msdata): New variable.
 2022-05-28 23:19:48 +02:00
Ricardo Wurmus 79158a5624
gnu: r-tcgabiolinksgui-data: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
 2022-05-28 23:19:48 +02:00
Ricardo Wurmus 9d538de266
gnu: r-curatedtcgadata: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 1c4d0fc9a9
gnu: r-gagedata: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus c56b553e97
gnu: r-affydata: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus e06ee7a745
gnu: r-all: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 15e10974ef
gnu: r-hsmmsinglecell: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 3ff4e48e85
gnu: r-pasilla: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0.
[propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 4f2ac5f19f
gnu: r-genomationdata: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus d24b0702b6
gnu: r-genelendatabase: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 7a58c9af46
gnu: r-copyhelper: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus e437cf10a4
gnu: r-chromstardata: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus 1413f9f214
gnu: r-celldex: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 3ce819d563
gnu: r-biscuiteerdata: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus ccb66a16a0
gnu: r-arrmdata: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 9db43e4979
gnu: r-aneufinderdata: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus c89eb68ede
gnu: r-adductdata: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 7feae8098c
gnu: r-pfam-db: Update to 3.15.0. 
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 5efae7b049
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0.
[propagated-inputs]: Add r-annotationdbi.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 8ee1246a38
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 3d93251ea5
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 549a9e6f6a
gnu: r-leidenbase: Update to 0.1.9. 
* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
 2022-05-28 23:19:46 +02:00
Ricardo Wurmus 319fa58dac
gnu: r-phyloseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
 2022-05-28 23:19:45 +02:00
Ricardo Wurmus e0be852a1e
gnu: r-tximeta: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
 2022-05-28 23:19:45 +02:00
Ricardo Wurmus e290d834d9
gnu: r-tricycle: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0.
[propagated-inputs]: Add r-ggnewscale.
 2022-05-28 23:19:45 +02:00